Contents of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

Forcing fields and other input files needed for the CS510
configuration can be obtained from
http://ecco2.org/products/model_setups/cs510.html

=================
UPDATES

December 30, 2006: updates for cube49, the first
"blend" integration.

December 11, 2006: preparing for cube47, same as cube43
but with Arctic monthly river runoff climatology.

December 5, 2006: 216-CPU code for cube46
Changed diagnostics to accomodate JMCs latest and some
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
to speed up code.

November 7, 2006: 216-CPU code for cube43
Bug fixes in growth.F routine and new set of diagnostics

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F

##########################################################################
##########################################################################
# Get forcing files, etc.
# Example below is for cube46 on /nobackup2a/menemenl

cd /nobackup2a/menemenl
mkdir cube47
cd cube47
ln -sf ../run_template .
ln -sf ../ncep_rgau .


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube49 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
         'surForcT','oceTAUX','oceTAUY','surForcS'}
    tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	Instructions for setting up a cube-sphere integration with sea-ice.
2
3	Forcing fields and other input files needed for the CS510
4	configuration can be obtained from
5	http://ecco2.org/products/model_setups/cs510.html
6
7	=================
8	UPDATES
9
10	December 30, 2006: updates for cube49, the first
11	"blend" integration.
12
13	December 11, 2006: preparing for cube47, same as cube43
14	but with Arctic monthly river runoff climatology.
15
16	December 5, 2006: 216-CPU code for cube46
17	Changed diagnostics to accomodate JMCs latest and some
18	changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
19	to speed up code.
20
21	November 7, 2006: 216-CPU code for cube43
22	Bug fixes in growth.F routine and new set of diagnostics
23
24	October 15, 2006: 216-CPU code for cube40
25
26	September 28, 2006: 216-CPU code for cube38
27
28	September 4, 2006
29	Modified 3232615 experiments to use grid_cs32. files from
30	verification/tutorial_held_suarez_cs/input instead of
31	tile* files from verification/global_ocean.cs32x15/input
32
33	August 8, 2006: 216-CPU code and input used for cube37
34	using "June 10, 2006" MITgcm code.
35
36	for online T/S profile diagnostics all that is needed is
37	profiles_init_fixed
38	profiles_inloop
39	see pkg/ecco/ecco_cost_init_fixed.F
40	pkg/ecco/cost_averagesfields.F
41
42	##########################################################################
43	##########################################################################
44	# Get forcing files, etc.
45	# Example below is for cube46 on /nobackup2a/menemenl
46
47	cd /nobackup2a/menemenl
48	mkdir cube47
49	cd cube47
50	ln -sf ../run_template .
51	ln -sf ../ncep_rgau .
52
53
54	##########################################################################
55	##########################################################################
56	# getting the code from anonymous CVS server
57
58	bash or sh shell:
59	$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
60	$ cvs login
61	( enter the CVS password: "cvsanon" )
62
63	tcsh or csh shell:
64	$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
65	$ cvs login
66	( enter the CVS password: "cvsanon" )
67
68	cvs co MITgcm_contrib/high_res_cube/README_ice
69	cvs co MITgcm_contrib/high_res_cube/code-mods
70	cvs co MITgcm_contrib/high_res_cube/input
71	cvs co MITgcm_contrib/high_res_cube/results
72	cvs co MITgcm_code
73	cvs co MITgcm/verification/global_ocean.cs32x15
74	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
75
76
77	##########################################################################
78	##########################################################################
79	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
80
81	cd MITgcm/verification/global_ocean.cs32x15/code
82	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
83	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
84	\cp SIZE.h_216 SIZE.h
85	\cp packages.conf_hr packages.conf
86
87	cd ../build
88	\rm *
89	../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
90	make depend
91	make -j
92
93	cd ..
94	mkdir run
95	cd run
96	\rm *
97	\cp ../input/* .
98	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
99	ln -sf ../../../../run_template/* .
100	\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
101	\rm bathy_Hmin50.bin 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
102	ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
103	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube49 pickup_seaice.0000000216
104	\cp ../build/mitgcmuv .
105	qsub job_altix
106
107
108	##########################################################################
109	##########################################################################
110	# 32326*15, 1-cpu cube sphere
111
112	cd MITgcm/verification/global_ocean.cs32x15/code
113	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
114	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
115	cd ../build
116	\rm *
117	../../../tools/genmake2 -mods=../code
118	make depend
119	make
120	cd ..
121	mkdir run
122	cd run
123	\rm *
124	\cp ../../tutorial_held_suarez_cs/input/grid* .
125	\cp ../input/* .
126	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
127	../build/mitgcmuv >& output.txt
128
129	comparison output is in:
130	../../../../MITgcm_contrib/high_res_cube/results/output.txt
131
132	to use matlab to look at the output
133	matlab
134
135	for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
136	'surForcT','oceTAUX','oceTAUY','surForcS'}
137	tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
138	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
139	end
140
141	heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
142	mask=0*heff; mask(find(heff>.001))=1;
143	uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
144	vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
145	clf
146	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
147	subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
148	subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
149	subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
150
151
152	##########################################################################
153	##########################################################################
154	# 32326*15, 17-tile, 1-cpu cube sphere experiment
155
156	cd MITgcm/verification/global_ocean.cs32x15/code
157	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
158	\cp ../code_alt/code.176t_8x4/* .
159	cd ../build
160	\rm *
161	../../../tools/genmake2 -mods=../code
162	make depend
163	make
164	cd ..
165	mkdir run
166	cd run
167	\rm *
168	\cp ../../tutorial_held_suarez_cs/input/grid* .
169	\cp ../input/* .
170	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
171	../build/mitgcmuv >& output.txt
172
173
174	##########################################################################
175	##########################################################################
176	# 32326*15, 2-cpu cube sphere on the altices with ifort
177
178	cd MITgcm/verification/global_ocean.cs32x15/code
179	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
180	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
181	\cp SIZE.h_mpi SIZE.h
182
183	cd ../build
184	\rm *
185	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
186	make depend
187	make -j
188
189	cd ..
190	mkdir run
191	cd run
192	\rm *
193	\cp ../../tutorial_held_suarez_cs/input/grid* .
194	\cp ../input/* .
195	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
196	mpirun -np 2 ../build/mitgcmuv
197
198
199	##########################################################################
200	##########################################################################
201	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
202	# starting with pickup file from end of 1992
203	# requires input files in sudirectories run_template and ncep_rgau
204
205	cd MITgcm/verification/global_ocean.cs32x15/code
206	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
207	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
208	\cp packages.conf_hr packages.conf
209
210	cd ../build
211	\rm *
212	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
213	make depend
214	make -j
215
216	cd ..
217	mkdir run
218	cd run
219	\rm *
220	\cp ../input/* .
221	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
222	qsub job_altix92_54t
223
224
225	##########################################################################
226	##########################################################################
227	# 5105106*50, 1500-tile, 150-cpu, excludes land
228	# uses s1500t_17x51 configuration
229
230	cd MITgcm/verification/global_ocean.cs32x15/code
231	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
232	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
233	\cp SIZE.h_150 SIZE.h
234	\cp packages.conf_hr packages.conf
235
236	cd ../build
237	\rm *
238	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
239	make depend
240	make -j
241
242	cd ..
243	mkdir run
244	cd run
245	\rm *
246	\cp ../input/* .
247	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
248	ln -sf ../../../../run_template/* .
249	\rm pickup*
250	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
251	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
252	\cp ../build/mitgcmuv mitgcmuv150
253	qsub job_altix150
254
255
256	##########################################################################
257	##########################################################################
258	# 5105106*50, 1500-tile, 375-cpu, excludes land
259	# uses s1500t_17x51 configuration
260	# example for running on c17-c20 using arrayd
261
262	cd MITgcm/verification/global_ocean.cs32x15/code
263	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
264	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
265	\cp SIZE.h_375 SIZE.h
266	\cp packages.conf_hr packages.conf
267
268	cd ../build
269	\rm *
270	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
271	make depend
272	make -j
273
274	cd ..
275	mkdir run
276	cd run
277	\rm *
278	\cp ../input/* .
279	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
280	ln -sf ../../../../run_template/* .
281	\rm pickup*
282	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
283	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
284	\cp ../build/mitgcmuv .
285	job_c20_375cpu < /dev/null >&! output.run &
286
287
288	##########################################################################
289	##########################################################################
290	# 5105106*50, 1500-tile, 375-cpu, excludes land
291	# uses s1500t_17x51 configuration
292	# example for running on c17-c20 using arrayd
293
294	cd MITgcm/verification/global_ocean.cs32x15/code
295	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
296	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
297	\cp SIZE.h_375 SIZE.h
298	\cp packages.conf_hr packages.conf
299
300	cd ../build
301	\rm *
302	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
303	make depend
304	make -j
305
306	cd ..
307	mkdir run
308	cd run
309	\rm *
310	\cp ../input/* .
311	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
312	ln -sf ../../../../run_template/* .
313	\rm pickup*
314	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
315	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
316	\cp ../build/mitgcmuv .
317	job_c20_375cpu < /dev/null >&! output.run &
318
319
320	##########################################################################
321	##########################################################################
322	# 5105106*50, 1500-tile, 500-cpu, excludes land
323	# uses s1500t_17x51 configuration
324	# example for running on c17-c20 using arrayd
325
326	cd MITgcm/verification/global_ocean.cs32x15/code
327	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
328	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
329	\cp SIZE.h_500 SIZE.h
330	\cp packages.conf_hr packages.conf
331
332	cd ../build
333	\rm *
334	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
335	make depend
336	make -j
337
338	cd ..
339	mkdir run
340	cd run
341	\rm *
342	\cp ../input/* .
343	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
344	ln -sf ../../../../run_template/* .
345	\rm pickup*
346	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
347	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
348	\cp ../build/mitgcmuv .
349	job_c19_500cpu < /dev/null >&! output.run &
350
351
352	##########################################################################
353	##########################################################################
354	# 5105106*50, 216-cpu cube sphere on cosmos
355
356	cd MITgcm/verification/global_ocean.cs32x15/code
357	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
358	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
359	\cp SIZE.h_216 SIZE.h
360	\cp packages.conf_hr packages.conf
361
362	module unload latest_intel80
363	module unload mpich-gm-intel80
364	module load latest_intel81
365	module load mpich-gm-intel81
366
367	cd ../build
368	\rm *
369	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
370	make depend
371	make -j
372
373	cd ..
374	mkdir run
375	cd run
376	\rm *
377	\cp ../input/* .
378	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
379	ln -sf ../../../../run_template/* .
380	\rm pickup*
381	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
382	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
383	\cp ../build/mitgcmuv .
384	bsub < job_cosmos
385
386
387	##########################################################################
388	##########################################################################
389	# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
390	# requires input files in sudirectories run_template and ncep_rgau
391	# presently residing under orion:/tmp1/dmenem/cube
392
393	cd MITgcm/verification/global_ocean.cs32x15/code
394	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
395	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
396	\cp SIZE.h_54 SIZE.h
397	\cp packages.conf_hr packages.conf
398
399	cd ../build
400	\rm *
401	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
402	make depend
403	make -j
404
405	cd ..
406	mkdir run
407	cd run
408	\rm *
409	\cp ../input/* .
410	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
411	qsub job_orion
412
413
414	##########################################################################
415	##########################################################################
416	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
417	# requires input files in sudirectories run_template and ncep_rgau
418	# presently residing under orion:/tmp1/dmenem/cube
419
420	cd MITgcm/verification/global_ocean.cs32x15/code
421	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
422	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
423	\cp SIZE.h_41 SIZE.h
424	\cp packages.conf_hr packages.conf
425
426	cd ../build
427	\rm *
428	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
429	make depend
430	make -j
431
432	cd ..
433	mkdir run
434	cd run
435	\rm *
436	\cp ../input/* .
437	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
438	qsub job_orion41
439
440
441	##########################################################################
442	##########################################################################
443	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
444	# requires input files in sudirectories run_template and ncep_rgau
445	# presently residing under orion:/tmp1/dmenem/cube
446
447	cd MITgcm/verification/global_ocean.cs32x15/code
448	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
449	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
450	\cp SIZE.h_50 SIZE.h
451	\cp packages.conf_hr packages.conf
452
453	cd ../build
454	\rm *
455	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
456	make depend
457	make -j
458
459	cd ..
460	mkdir run
461	cd run
462	\rm *
463	\cp ../input/* .
464	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
465	qsub job_orion