Contents of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

Forcing fields and other input files needed for the CS510
configuration can be obtained from
http://ecco2.org/products/model_setups/cs510.html

=================
UPDATES

December 11, 2006: preparing for cube47, same as cube43
but with Arctic monthly river runoff climatology

December 5, 2006: 216-CPU code for cube46
Changed diagnostics to accomodate JMCs latest and some
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
to speed up code.

November 7, 2006: 216-CPU code for cube43
Bug fixes in growth.F routine and new set of diagnostics

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F

##########################################################################
##########################################################################
# Get forcing files, etc.
# Example below is for cube46 on /nobackup2a/menemenl

cd /nobackup2a/menemenl
mkdir cube47
cd cube47
ln -sf ../run_template .
ln -sf ../ncep_rgau .


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
         'surForcT','oceTAUX','oceTAUY','surForcS'}
    tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	Instructions for setting up a cube-sphere integration with sea-ice.
2
3	Forcing fields and other input files needed for the CS510
4	configuration can be obtained from
5	http://ecco2.org/products/model_setups/cs510.html
6
7	=================
8	UPDATES
9
10	December 11, 2006: preparing for cube47, same as cube43
11	but with Arctic monthly river runoff climatology
12
13	December 5, 2006: 216-CPU code for cube46
14	Changed diagnostics to accomodate JMCs latest and some
15	changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
16	to speed up code.
17
18	November 7, 2006: 216-CPU code for cube43
19	Bug fixes in growth.F routine and new set of diagnostics
20
21	October 15, 2006: 216-CPU code for cube40
22
23	September 28, 2006: 216-CPU code for cube38
24
25	September 4, 2006
26	Modified 3232615 experiments to use grid_cs32. files from
27	verification/tutorial_held_suarez_cs/input instead of
28	tile* files from verification/global_ocean.cs32x15/input
29
30	August 8, 2006: 216-CPU code and input used for cube37
31	using "June 10, 2006" MITgcm code.
32
33	for online T/S profile diagnostics all that is needed is
34	profiles_init_fixed
35	profiles_inloop
36	see pkg/ecco/ecco_cost_init_fixed.F
37	pkg/ecco/cost_averagesfields.F
38
39	##########################################################################
40	##########################################################################
41	# Get forcing files, etc.
42	# Example below is for cube46 on /nobackup2a/menemenl
43
44	cd /nobackup2a/menemenl
45	mkdir cube47
46	cd cube47
47	ln -sf ../run_template .
48	ln -sf ../ncep_rgau .
49
50
51	##########################################################################
52	##########################################################################
53	# getting the code from anonymous CVS server
54
55	bash or sh shell:
56	$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
57	$ cvs login
58	( enter the CVS password: "cvsanon" )
59
60	tcsh or csh shell:
61	$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
62	$ cvs login
63	( enter the CVS password: "cvsanon" )
64
65	cvs co MITgcm_contrib/high_res_cube/README_ice
66	cvs co MITgcm_contrib/high_res_cube/code-mods
67	cvs co MITgcm_contrib/high_res_cube/input
68	cvs co MITgcm_contrib/high_res_cube/results
69	cvs co MITgcm_code
70	cvs co MITgcm/verification/global_ocean.cs32x15
71	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
72
73
74	##########################################################################
75	##########################################################################
76	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
77
78	cd MITgcm/verification/global_ocean.cs32x15/code
79	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
80	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
81	\cp SIZE.h_216 SIZE.h
82	\cp packages.conf_hr packages.conf
83
84	cd ../build
85	\rm *
86	../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
87	make depend
88	make -j
89
90	cd ..
91	mkdir run
92	cd run
93	\rm *
94	\cp ../input/* .
95	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
96	ln -sf ../../../../run_template/* .
97	\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
98	\rm bathy_Hmin50.bin 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
99	ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
100	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
101	\cp ../build/mitgcmuv .
102	qsub job_altix
103
104
105	##########################################################################
106	##########################################################################
107	# 32326*15, 1-cpu cube sphere
108
109	cd MITgcm/verification/global_ocean.cs32x15/code
110	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
111	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
112	cd ../build
113	\rm *
114	../../../tools/genmake2 -mods=../code
115	make depend
116	make
117	cd ..
118	mkdir run
119	cd run
120	\rm *
121	\cp ../../tutorial_held_suarez_cs/input/grid* .
122	\cp ../input/* .
123	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
124	../build/mitgcmuv >& output.txt
125
126	comparison output is in:
127	../../../../MITgcm_contrib/high_res_cube/results/output.txt
128
129	to use matlab to look at the output
130	matlab
131
132	for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
133	'surForcT','oceTAUX','oceTAUY','surForcS'}
134	tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
135	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
136	end
137
138	heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
139	mask=0*heff; mask(find(heff>.001))=1;
140	uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
141	vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
142	clf
143	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
144	subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
145	subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
146	subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
147
148
149	##########################################################################
150	##########################################################################
151	# 32326*15, 17-tile, 1-cpu cube sphere experiment
152
153	cd MITgcm/verification/global_ocean.cs32x15/code
154	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
155	\cp ../code_alt/code.176t_8x4/* .
156	cd ../build
157	\rm *
158	../../../tools/genmake2 -mods=../code
159	make depend
160	make
161	cd ..
162	mkdir run
163	cd run
164	\rm *
165	\cp ../../tutorial_held_suarez_cs/input/grid* .
166	\cp ../input/* .
167	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
168	../build/mitgcmuv >& output.txt
169
170
171	##########################################################################
172	##########################################################################
173	# 32326*15, 2-cpu cube sphere on the altices with ifort
174
175	cd MITgcm/verification/global_ocean.cs32x15/code
176	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
177	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
178	\cp SIZE.h_mpi SIZE.h
179
180	cd ../build
181	\rm *
182	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
183	make depend
184	make -j
185
186	cd ..
187	mkdir run
188	cd run
189	\rm *
190	\cp ../../tutorial_held_suarez_cs/input/grid* .
191	\cp ../input/* .
192	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
193	mpirun -np 2 ../build/mitgcmuv
194
195
196	##########################################################################
197	##########################################################################
198	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
199	# starting with pickup file from end of 1992
200	# requires input files in sudirectories run_template and ncep_rgau
201
202	cd MITgcm/verification/global_ocean.cs32x15/code
203	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
204	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
205	\cp packages.conf_hr packages.conf
206
207	cd ../build
208	\rm *
209	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
210	make depend
211	make -j
212
213	cd ..
214	mkdir run
215	cd run
216	\rm *
217	\cp ../input/* .
218	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
219	qsub job_altix92_54t
220
221
222	##########################################################################
223	##########################################################################
224	# 5105106*50, 1500-tile, 150-cpu, excludes land
225	# uses s1500t_17x51 configuration
226
227	cd MITgcm/verification/global_ocean.cs32x15/code
228	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
229	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
230	\cp SIZE.h_150 SIZE.h
231	\cp packages.conf_hr packages.conf
232
233	cd ../build
234	\rm *
235	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
236	make depend
237	make -j
238
239	cd ..
240	mkdir run
241	cd run
242	\rm *
243	\cp ../input/* .
244	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
245	ln -sf ../../../../run_template/* .
246	\rm pickup*
247	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
248	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
249	\cp ../build/mitgcmuv mitgcmuv150
250	qsub job_altix150
251
252
253	##########################################################################
254	##########################################################################
255	# 5105106*50, 1500-tile, 375-cpu, excludes land
256	# uses s1500t_17x51 configuration
257	# example for running on c17-c20 using arrayd
258
259	cd MITgcm/verification/global_ocean.cs32x15/code
260	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
261	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
262	\cp SIZE.h_375 SIZE.h
263	\cp packages.conf_hr packages.conf
264
265	cd ../build
266	\rm *
267	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
268	make depend
269	make -j
270
271	cd ..
272	mkdir run
273	cd run
274	\rm *
275	\cp ../input/* .
276	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
277	ln -sf ../../../../run_template/* .
278	\rm pickup*
279	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
280	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
281	\cp ../build/mitgcmuv .
282	job_c20_375cpu < /dev/null >&! output.run &
283
284
285	##########################################################################
286	##########################################################################
287	# 5105106*50, 1500-tile, 375-cpu, excludes land
288	# uses s1500t_17x51 configuration
289	# example for running on c17-c20 using arrayd
290
291	cd MITgcm/verification/global_ocean.cs32x15/code
292	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
293	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
294	\cp SIZE.h_375 SIZE.h
295	\cp packages.conf_hr packages.conf
296
297	cd ../build
298	\rm *
299	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
300	make depend
301	make -j
302
303	cd ..
304	mkdir run
305	cd run
306	\rm *
307	\cp ../input/* .
308	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
309	ln -sf ../../../../run_template/* .
310	\rm pickup*
311	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
312	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
313	\cp ../build/mitgcmuv .
314	job_c20_375cpu < /dev/null >&! output.run &
315
316
317	##########################################################################
318	##########################################################################
319	# 5105106*50, 1500-tile, 500-cpu, excludes land
320	# uses s1500t_17x51 configuration
321	# example for running on c17-c20 using arrayd
322
323	cd MITgcm/verification/global_ocean.cs32x15/code
324	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
325	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
326	\cp SIZE.h_500 SIZE.h
327	\cp packages.conf_hr packages.conf
328
329	cd ../build
330	\rm *
331	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
332	make depend
333	make -j
334
335	cd ..
336	mkdir run
337	cd run
338	\rm *
339	\cp ../input/* .
340	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
341	ln -sf ../../../../run_template/* .
342	\rm pickup*
343	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
344	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
345	\cp ../build/mitgcmuv .
346	job_c19_500cpu < /dev/null >&! output.run &
347
348
349	##########################################################################
350	##########################################################################
351	# 5105106*50, 216-cpu cube sphere on cosmos
352
353	cd MITgcm/verification/global_ocean.cs32x15/code
354	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
355	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
356	\cp SIZE.h_216 SIZE.h
357	\cp packages.conf_hr packages.conf
358
359	module unload latest_intel80
360	module unload mpich-gm-intel80
361	module load latest_intel81
362	module load mpich-gm-intel81
363
364	cd ../build
365	\rm *
366	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
367	make depend
368	make -j
369
370	cd ..
371	mkdir run
372	cd run
373	\rm *
374	\cp ../input/* .
375	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
376	ln -sf ../../../../run_template/* .
377	\rm pickup*
378	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
379	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
380	\cp ../build/mitgcmuv .
381	bsub < job_cosmos
382
383
384	##########################################################################
385	##########################################################################
386	# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
387	# requires input files in sudirectories run_template and ncep_rgau
388	# presently residing under orion:/tmp1/dmenem/cube
389
390	cd MITgcm/verification/global_ocean.cs32x15/code
391	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
392	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
393	\cp SIZE.h_54 SIZE.h
394	\cp packages.conf_hr packages.conf
395
396	cd ../build
397	\rm *
398	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
399	make depend
400	make -j
401
402	cd ..
403	mkdir run
404	cd run
405	\rm *
406	\cp ../input/* .
407	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
408	qsub job_orion
409
410
411	##########################################################################
412	##########################################################################
413	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
414	# requires input files in sudirectories run_template and ncep_rgau
415	# presently residing under orion:/tmp1/dmenem/cube
416
417	cd MITgcm/verification/global_ocean.cs32x15/code
418	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
419	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
420	\cp SIZE.h_41 SIZE.h
421	\cp packages.conf_hr packages.conf
422
423	cd ../build
424	\rm *
425	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
426	make depend
427	make -j
428
429	cd ..
430	mkdir run
431	cd run
432	\rm *
433	\cp ../input/* .
434	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
435	qsub job_orion41
436
437
438	##########################################################################
439	##########################################################################
440	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
441	# requires input files in sudirectories run_template and ncep_rgau
442	# presently residing under orion:/tmp1/dmenem/cube
443
444	cd MITgcm/verification/global_ocean.cs32x15/code
445	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
446	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
447	\cp SIZE.h_50 SIZE.h
448	\cp packages.conf_hr packages.conf
449
450	cd ../build
451	\rm *
452	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
453	make depend
454	make -j
455
456	cd ..
457	mkdir run
458	cd run
459	\rm *
460	\cp ../input/* .
461	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
462	qsub job_orion