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Revision 1.80 - (show annotations) (download)
Wed Dec 6 01:07:44 2006 UTC (18 years, 7 months ago) by dimitri
Branch: MAIN
Changes since 1.79: +11 -3 lines
preparing for cube46

1 Instructions for setting up a cube-sphere integration with sea-ice.
2
3 =================
4 UPDATES
5
6 December 5, 2006: 216-CPU code for cube46
7 Changed diagnostics to accomodate JMCs latest and some
8 changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
9 to speed up code.
10
11 November 7, 2006: 216-CPU code for cube43
12 Bug fixes in growth.F routine and new set of diagnostics
13
14 October 15, 2006: 216-CPU code for cube40
15
16 September 28, 2006: 216-CPU code for cube38
17
18 September 4, 2006
19 Modified 32*32*6*15 experiments to use grid_cs32.* files from
20 verification/tutorial_held_suarez_cs/input instead of
21 tile* files from verification/global_ocean.cs32x15/input
22
23 August 8, 2006: 216-CPU code and input used for cube37
24 using "June 10, 2006" MITgcm code.
25
26 for online T/S profile diagnostics all that is needed is
27 profiles_init_fixed
28 profiles_inloop
29 see pkg/ecco/ecco_cost_init_fixed.F
30 pkg/ecco/cost_averagesfields.F
31
32 ##########################################################################
33 ##########################################################################
34 # Get forcing files, etc.
35 # Example below is for cube46 on /nobackup2a/menemenl
36
37 cd /nobackup2a/menemenl
38 mkdir cube46
39 cd cube46
40 ln -sf ../run_template .
41 ln -sf ../ncep_rgau .
42
43
44 ##########################################################################
45 ##########################################################################
46 # getting the code from anonymous CVS server
47
48 bash or sh shell:
49 $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
50 $ cvs login
51 ( enter the CVS password: "cvsanon" )
52
53 tcsh or csh shell:
54 $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
55 $ cvs login
56 ( enter the CVS password: "cvsanon" )
57
58 cvs co MITgcm_contrib/high_res_cube/README_ice
59 cvs co MITgcm_contrib/high_res_cube/code-mods
60 cvs co MITgcm_contrib/high_res_cube/input
61 cvs co MITgcm_contrib/high_res_cube/results
62 cvs co MITgcm_code
63 cvs co MITgcm/verification/global_ocean.cs32x15
64 cvs co MITgcm/verification/tutorial_held_suarez_cs/input
65
66
67 ##########################################################################
68 ##########################################################################
69 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
70
71 cd MITgcm/verification/global_ocean.cs32x15/code
72 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
73 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
74 \cp SIZE.h_216 SIZE.h
75 \cp packages.conf_hr packages.conf
76
77 cd ../build
78 \rm *
79 ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
80 make depend
81 make -j
82
83 cd ..
84 mkdir run
85 cd run
86 \rm *
87 \cp ../input/* .
88 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
89 ln -sf ../../../../run_template/* .
90 \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
91 \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
92 ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
93 ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
94 \cp ../build/mitgcmuv .
95 qsub job_altix
96
97
98 ##########################################################################
99 ##########################################################################
100 # 32*32*6*15, 1-cpu cube sphere
101
102 cd MITgcm/verification/global_ocean.cs32x15/code
103 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
104 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
105 cd ../build
106 \rm *
107 ../../../tools/genmake2 -mods=../code
108 make depend
109 make
110 cd ..
111 mkdir run
112 cd run
113 \rm *
114 \cp ../../tutorial_held_suarez_cs/input/grid* .
115 \cp ../input/* .
116 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
117 ../build/mitgcmuv >& output.txt
118
119 comparison output is in:
120 ../../../../MITgcm_contrib/high_res_cube/results/output.txt
121
122 to use matlab to look at the output
123 matlab
124
125 for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
126 'surForcT','oceTAUX','oceTAUY','surForcS'}
127 tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
128 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
129 end
130
131 heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
132 mask=0*heff; mask(find(heff>.001))=1;
133 uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
134 vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
135 clf
136 subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
137 subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
138 subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
139 subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
140
141
142 ##########################################################################
143 ##########################################################################
144 # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
145
146 cd MITgcm/verification/global_ocean.cs32x15/code
147 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
148 \cp ../code_alt/code.176t_8x4/* .
149 cd ../build
150 \rm *
151 ../../../tools/genmake2 -mods=../code
152 make depend
153 make
154 cd ..
155 mkdir run
156 cd run
157 \rm *
158 \cp ../../tutorial_held_suarez_cs/input/grid* .
159 \cp ../input/* .
160 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
161 ../build/mitgcmuv >& output.txt
162
163
164 ##########################################################################
165 ##########################################################################
166 # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
167
168 cd MITgcm/verification/global_ocean.cs32x15/code
169 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
170 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
171 \cp SIZE.h_mpi SIZE.h
172
173 cd ../build
174 \rm *
175 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
176 make depend
177 make -j
178
179 cd ..
180 mkdir run
181 cd run
182 \rm *
183 \cp ../../tutorial_held_suarez_cs/input/grid* .
184 \cp ../input/* .
185 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
186 mpirun -np 2 ../build/mitgcmuv
187
188
189 ##########################################################################
190 ##########################################################################
191 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
192 # starting with pickup file from end of 1992
193 # requires input files in sudirectories run_template and ncep_rgau
194
195 cd MITgcm/verification/global_ocean.cs32x15/code
196 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
197 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
198 \cp packages.conf_hr packages.conf
199
200 cd ../build
201 \rm *
202 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
203 make depend
204 make -j
205
206 cd ..
207 mkdir run
208 cd run
209 \rm *
210 \cp ../input/* .
211 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
212 qsub job_altix92_54t
213
214
215 ##########################################################################
216 ##########################################################################
217 # 510*510*6*50, 1500-tile, 150-cpu, excludes land
218 # uses s1500t_17x51 configuration
219
220 cd MITgcm/verification/global_ocean.cs32x15/code
221 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
222 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
223 \cp SIZE.h_150 SIZE.h
224 \cp packages.conf_hr packages.conf
225
226 cd ../build
227 \rm *
228 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
229 make depend
230 make -j
231
232 cd ..
233 mkdir run
234 cd run
235 \rm *
236 \cp ../input/* .
237 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
238 ln -sf ../../../../run_template/* .
239 \rm pickup*
240 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
241 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
242 \cp ../build/mitgcmuv mitgcmuv150
243 qsub job_altix150
244
245
246 ##########################################################################
247 ##########################################################################
248 # 510*510*6*50, 1500-tile, 375-cpu, excludes land
249 # uses s1500t_17x51 configuration
250 # example for running on c17-c20 using arrayd
251
252 cd MITgcm/verification/global_ocean.cs32x15/code
253 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
254 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
255 \cp SIZE.h_375 SIZE.h
256 \cp packages.conf_hr packages.conf
257
258 cd ../build
259 \rm *
260 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
261 make depend
262 make -j
263
264 cd ..
265 mkdir run
266 cd run
267 \rm *
268 \cp ../input/* .
269 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
270 ln -sf ../../../../run_template/* .
271 \rm pickup*
272 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
273 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
274 \cp ../build/mitgcmuv .
275 job_c20_375cpu < /dev/null >&! output.run &
276
277
278 ##########################################################################
279 ##########################################################################
280 # 510*510*6*50, 1500-tile, 375-cpu, excludes land
281 # uses s1500t_17x51 configuration
282 # example for running on c17-c20 using arrayd
283
284 cd MITgcm/verification/global_ocean.cs32x15/code
285 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
286 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
287 \cp SIZE.h_375 SIZE.h
288 \cp packages.conf_hr packages.conf
289
290 cd ../build
291 \rm *
292 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
293 make depend
294 make -j
295
296 cd ..
297 mkdir run
298 cd run
299 \rm *
300 \cp ../input/* .
301 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
302 ln -sf ../../../../run_template/* .
303 \rm pickup*
304 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
305 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
306 \cp ../build/mitgcmuv .
307 job_c20_375cpu < /dev/null >&! output.run &
308
309
310 ##########################################################################
311 ##########################################################################
312 # 510*510*6*50, 1500-tile, 500-cpu, excludes land
313 # uses s1500t_17x51 configuration
314 # example for running on c17-c20 using arrayd
315
316 cd MITgcm/verification/global_ocean.cs32x15/code
317 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
318 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
319 \cp SIZE.h_500 SIZE.h
320 \cp packages.conf_hr packages.conf
321
322 cd ../build
323 \rm *
324 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
325 make depend
326 make -j
327
328 cd ..
329 mkdir run
330 cd run
331 \rm *
332 \cp ../input/* .
333 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
334 ln -sf ../../../../run_template/* .
335 \rm pickup*
336 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
337 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
338 \cp ../build/mitgcmuv .
339 job_c19_500cpu < /dev/null >&! output.run &
340
341
342 ##########################################################################
343 ##########################################################################
344 # 510*510*6*50, 216-cpu cube sphere on cosmos
345
346 cd MITgcm/verification/global_ocean.cs32x15/code
347 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
348 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
349 \cp SIZE.h_216 SIZE.h
350 \cp packages.conf_hr packages.conf
351
352 module unload latest_intel80
353 module unload mpich-gm-intel80
354 module load latest_intel81
355 module load mpich-gm-intel81
356
357 cd ../build
358 \rm *
359 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
360 make depend
361 make -j
362
363 cd ..
364 mkdir run
365 cd run
366 \rm *
367 \cp ../input/* .
368 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
369 ln -sf ../../../../run_template/* .
370 \rm pickup*
371 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
372 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
373 \cp ../build/mitgcmuv .
374 bsub < job_cosmos
375
376
377 ##########################################################################
378 ##########################################################################
379 # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
380 # requires input files in sudirectories run_template and ncep_rgau
381 # presently residing under orion:/tmp1/dmenem/cube
382
383 cd MITgcm/verification/global_ocean.cs32x15/code
384 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
385 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
386 \cp SIZE.h_54 SIZE.h
387 \cp packages.conf_hr packages.conf
388
389 cd ../build
390 \rm *
391 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
392 make depend
393 make -j
394
395 cd ..
396 mkdir run
397 cd run
398 \rm *
399 \cp ../input/* .
400 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
401 qsub job_orion
402
403
404 ##########################################################################
405 ##########################################################################
406 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
407 # requires input files in sudirectories run_template and ncep_rgau
408 # presently residing under orion:/tmp1/dmenem/cube
409
410 cd MITgcm/verification/global_ocean.cs32x15/code
411 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
412 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
413 \cp SIZE.h_41 SIZE.h
414 \cp packages.conf_hr packages.conf
415
416 cd ../build
417 \rm *
418 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
419 make depend
420 make -j
421
422 cd ..
423 mkdir run
424 cd run
425 \rm *
426 \cp ../input/* .
427 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
428 qsub job_orion41
429
430
431 ##########################################################################
432 ##########################################################################
433 # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
434 # requires input files in sudirectories run_template and ncep_rgau
435 # presently residing under orion:/tmp1/dmenem/cube
436
437 cd MITgcm/verification/global_ocean.cs32x15/code
438 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
439 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
440 \cp SIZE.h_50 SIZE.h
441 \cp packages.conf_hr packages.conf
442
443 cd ../build
444 \rm *
445 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
446 make depend
447 make -j
448
449 cd ..
450 mkdir run
451 cd run
452 \rm *
453 \cp ../input/* .
454 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
455 qsub job_orion

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