Contents of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

=================
UPDATES

December 5, 2006: 216-CPU code for cube46
Changed diagnostics to accomodate JMCs latest and some
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
to speed up code.

November 7, 2006: 216-CPU code for cube43
Bug fixes in growth.F routine and new set of diagnostics

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F


##########################################################################
##########################################################################
# getting the code from anonymous CVS server
#

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
# requires input files in sudirectories run_template and ncep_rgau
# these can be obained from lou:/u/menemenl/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
         'surForcT','oceTAUX','oceTAUY','surForcS'}
    tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	Instructions for setting up a cube-sphere integration with sea-ice.
2
3	=================
4	UPDATES
5
6	December 5, 2006: 216-CPU code for cube46
7	Changed diagnostics to accomodate JMCs latest and some
8	changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
9	to speed up code.
10
11	November 7, 2006: 216-CPU code for cube43
12	Bug fixes in growth.F routine and new set of diagnostics
13
14	October 15, 2006: 216-CPU code for cube40
15
16	September 28, 2006: 216-CPU code for cube38
17
18	September 4, 2006
19	Modified 3232615 experiments to use grid_cs32. files from
20	verification/tutorial_held_suarez_cs/input instead of
21	tile* files from verification/global_ocean.cs32x15/input
22
23	August 8, 2006: 216-CPU code and input used for cube37
24	using "June 10, 2006" MITgcm code.
25
26	for online T/S profile diagnostics all that is needed is
27	profiles_init_fixed
28	profiles_inloop
29	see pkg/ecco/ecco_cost_init_fixed.F
30	pkg/ecco/cost_averagesfields.F
31
32
33	##########################################################################
34	##########################################################################
35	# getting the code from anonymous CVS server
36	#
37
38	bash or sh shell:
39	$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
40	$ cvs login
41	( enter the CVS password: "cvsanon" )
42
43	tcsh or csh shell:
44	$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
45	$ cvs login
46	( enter the CVS password: "cvsanon" )
47
48	cvs co MITgcm_contrib/high_res_cube/README_ice
49	cvs co MITgcm_contrib/high_res_cube/code-mods
50	cvs co MITgcm_contrib/high_res_cube/input
51	cvs co MITgcm_contrib/high_res_cube/results
52	cvs co MITgcm_code
53	cvs co MITgcm/verification/global_ocean.cs32x15
54	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
55
56
57	##########################################################################
58	##########################################################################
59	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
60	# requires input files in sudirectories run_template and ncep_rgau
61	# these can be obained from lou:/u/menemenl/cube
62
63	cd MITgcm/verification/global_ocean.cs32x15/code
64	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
65	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
66	\cp SIZE.h_216 SIZE.h
67	\cp packages.conf_hr packages.conf
68
69	cd ../build
70	\rm *
71	../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
72	make depend
73	make -j
74
75	cd ..
76	mkdir run
77	cd run
78	\rm *
79	\cp ../input/* .
80	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
81	ln -sf ../../../../run_template/* .
82	\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
83	\rm bathy_Hmin50.bin 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
84	ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
85	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
86	\cp ../build/mitgcmuv .
87	qsub job_altix
88
89
90	##########################################################################
91	##########################################################################
92	# 32326*15, 1-cpu cube sphere
93
94	cd MITgcm/verification/global_ocean.cs32x15/code
95	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
96	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
97	cd ../build
98	\rm *
99	../../../tools/genmake2 -mods=../code
100	make depend
101	make
102	cd ..
103	mkdir run
104	cd run
105	\rm *
106	\cp ../../tutorial_held_suarez_cs/input/grid* .
107	\cp ../input/* .
108	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
109	../build/mitgcmuv >& output.txt
110
111	comparison output is in:
112	../../../../MITgcm_contrib/high_res_cube/results/output.txt
113
114	to use matlab to look at the output
115	matlab
116
117	for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
118	'surForcT','oceTAUX','oceTAUY','surForcS'}
119	tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
120	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
121	end
122
123	heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
124	mask=0*heff; mask(find(heff>.001))=1;
125	uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
126	vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
127	clf
128	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
129	subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
130	subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
131	subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
132
133
134	##########################################################################
135	##########################################################################
136	# 32326*15, 17-tile, 1-cpu cube sphere experiment
137
138	cd MITgcm/verification/global_ocean.cs32x15/code
139	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
140	\cp ../code_alt/code.176t_8x4/* .
141	cd ../build
142	\rm *
143	../../../tools/genmake2 -mods=../code
144	make depend
145	make
146	cd ..
147	mkdir run
148	cd run
149	\rm *
150	\cp ../../tutorial_held_suarez_cs/input/grid* .
151	\cp ../input/* .
152	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
153	../build/mitgcmuv >& output.txt
154
155
156	##########################################################################
157	##########################################################################
158	# 32326*15, 2-cpu cube sphere on the altices with ifort
159
160	cd MITgcm/verification/global_ocean.cs32x15/code
161	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
162	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
163	\cp SIZE.h_mpi SIZE.h
164
165	cd ../build
166	\rm *
167	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
168	make depend
169	make -j
170
171	cd ..
172	mkdir run
173	cd run
174	\rm *
175	\cp ../../tutorial_held_suarez_cs/input/grid* .
176	\cp ../input/* .
177	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
178	mpirun -np 2 ../build/mitgcmuv
179
180
181	##########################################################################
182	##########################################################################
183	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
184	# starting with pickup file from end of 1992
185	# requires input files in sudirectories run_template and ncep_rgau
186
187	cd MITgcm/verification/global_ocean.cs32x15/code
188	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
189	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
190	\cp packages.conf_hr packages.conf
191
192	cd ../build
193	\rm *
194	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
195	make depend
196	make -j
197
198	cd ..
199	mkdir run
200	cd run
201	\rm *
202	\cp ../input/* .
203	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
204	qsub job_altix92_54t
205
206
207	##########################################################################
208	##########################################################################
209	# 5105106*50, 1500-tile, 150-cpu, excludes land
210	# uses s1500t_17x51 configuration
211
212	cd MITgcm/verification/global_ocean.cs32x15/code
213	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
214	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
215	\cp SIZE.h_150 SIZE.h
216	\cp packages.conf_hr packages.conf
217
218	cd ../build
219	\rm *
220	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
221	make depend
222	make -j
223
224	cd ..
225	mkdir run
226	cd run
227	\rm *
228	\cp ../input/* .
229	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
230	ln -sf ../../../../run_template/* .
231	\rm pickup*
232	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
233	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
234	\cp ../build/mitgcmuv mitgcmuv150
235	qsub job_altix150
236
237
238	##########################################################################
239	##########################################################################
240	# 5105106*50, 1500-tile, 375-cpu, excludes land
241	# uses s1500t_17x51 configuration
242	# example for running on c17-c20 using arrayd
243
244	cd MITgcm/verification/global_ocean.cs32x15/code
245	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
246	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
247	\cp SIZE.h_375 SIZE.h
248	\cp packages.conf_hr packages.conf
249
250	cd ../build
251	\rm *
252	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
253	make depend
254	make -j
255
256	cd ..
257	mkdir run
258	cd run
259	\rm *
260	\cp ../input/* .
261	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
262	ln -sf ../../../../run_template/* .
263	\rm pickup*
264	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
265	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
266	\cp ../build/mitgcmuv .
267	job_c20_375cpu < /dev/null >&! output.run &
268
269
270	##########################################################################
271	##########################################################################
272	# 5105106*50, 1500-tile, 375-cpu, excludes land
273	# uses s1500t_17x51 configuration
274	# example for running on c17-c20 using arrayd
275
276	cd MITgcm/verification/global_ocean.cs32x15/code
277	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
278	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
279	\cp SIZE.h_375 SIZE.h
280	\cp packages.conf_hr packages.conf
281
282	cd ../build
283	\rm *
284	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
285	make depend
286	make -j
287
288	cd ..
289	mkdir run
290	cd run
291	\rm *
292	\cp ../input/* .
293	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
294	ln -sf ../../../../run_template/* .
295	\rm pickup*
296	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
297	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
298	\cp ../build/mitgcmuv .
299	job_c20_375cpu < /dev/null >&! output.run &
300
301
302	##########################################################################
303	##########################################################################
304	# 5105106*50, 1500-tile, 500-cpu, excludes land
305	# uses s1500t_17x51 configuration
306	# example for running on c17-c20 using arrayd
307
308	cd MITgcm/verification/global_ocean.cs32x15/code
309	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
310	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
311	\cp SIZE.h_500 SIZE.h
312	\cp packages.conf_hr packages.conf
313
314	cd ../build
315	\rm *
316	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
317	make depend
318	make -j
319
320	cd ..
321	mkdir run
322	cd run
323	\rm *
324	\cp ../input/* .
325	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
326	ln -sf ../../../../run_template/* .
327	\rm pickup*
328	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
329	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
330	\cp ../build/mitgcmuv .
331	job_c19_500cpu < /dev/null >&! output.run &
332
333
334	##########################################################################
335	##########################################################################
336	# 5105106*50, 216-cpu cube sphere on cosmos
337
338	cd MITgcm/verification/global_ocean.cs32x15/code
339	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
340	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
341	\cp SIZE.h_216 SIZE.h
342	\cp packages.conf_hr packages.conf
343
344	module unload latest_intel80
345	module unload mpich-gm-intel80
346	module load latest_intel81
347	module load mpich-gm-intel81
348
349	cd ../build
350	\rm *
351	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
352	make depend
353	make -j
354
355	cd ..
356	mkdir run
357	cd run
358	\rm *
359	\cp ../input/* .
360	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
361	ln -sf ../../../../run_template/* .
362	\rm pickup*
363	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
364	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
365	\cp ../build/mitgcmuv .
366	bsub < job_cosmos
367
368
369	##########################################################################
370	##########################################################################
371	# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
372	# requires input files in sudirectories run_template and ncep_rgau
373	# presently residing under orion:/tmp1/dmenem/cube
374
375	cd MITgcm/verification/global_ocean.cs32x15/code
376	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
377	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
378	\cp SIZE.h_54 SIZE.h
379	\cp packages.conf_hr packages.conf
380
381	cd ../build
382	\rm *
383	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
384	make depend
385	make -j
386
387	cd ..
388	mkdir run
389	cd run
390	\rm *
391	\cp ../input/* .
392	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
393	qsub job_orion
394
395
396	##########################################################################
397	##########################################################################
398	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
399	# requires input files in sudirectories run_template and ncep_rgau
400	# presently residing under orion:/tmp1/dmenem/cube
401
402	cd MITgcm/verification/global_ocean.cs32x15/code
403	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
404	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
405	\cp SIZE.h_41 SIZE.h
406	\cp packages.conf_hr packages.conf
407
408	cd ../build
409	\rm *
410	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
411	make depend
412	make -j
413
414	cd ..
415	mkdir run
416	cd run
417	\rm *
418	\cp ../input/* .
419	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
420	qsub job_orion41
421
422
423	##########################################################################
424	##########################################################################
425	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
426	# requires input files in sudirectories run_template and ncep_rgau
427	# presently residing under orion:/tmp1/dmenem/cube
428
429	cd MITgcm/verification/global_ocean.cs32x15/code
430	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
431	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
432	\cp SIZE.h_50 SIZE.h
433	\cp packages.conf_hr packages.conf
434
435	cd ../build
436	\rm *
437	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
438	make depend
439	make -j
440
441	cd ..
442	mkdir run
443	cd run
444	\rm *
445	\cp ../input/* .
446	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
447	qsub job_orion