Contents of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

=================
UPDATES

November 7, 2006: 216-CPU code for cube43
Bug fixes in growth.F routine and new set of diagnostics

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F


##########################################################################
##########################################################################
# getting the code from anonymous CVS server
#

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
# requires input files in sudirectories run_template and ncep_rgau
# these can be obained from lou:/u/menemenl/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
         'QNETtave','FVtave','FUtave','EmPmRtave'}
    tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	Instructions for setting up a cube-sphere integration with sea-ice.
2
3	=================
4	UPDATES
5
6	November 7, 2006: 216-CPU code for cube43
7	Bug fixes in growth.F routine and new set of diagnostics
8
9	October 15, 2006: 216-CPU code for cube40
10
11	September 28, 2006: 216-CPU code for cube38
12
13	September 4, 2006
14	Modified 3232615 experiments to use grid_cs32. files from
15	verification/tutorial_held_suarez_cs/input instead of
16	tile* files from verification/global_ocean.cs32x15/input
17
18	August 8, 2006: 216-CPU code and input used for cube37
19	using "June 10, 2006" MITgcm code.
20
21	for online T/S profile diagnostics all that is needed is
22	profiles_init_fixed
23	profiles_inloop
24	see pkg/ecco/ecco_cost_init_fixed.F
25	pkg/ecco/cost_averagesfields.F
26
27
28	##########################################################################
29	##########################################################################
30	# getting the code from anonymous CVS server
31	#
32
33	bash or sh shell:
34	$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
35	$ cvs login
36	( enter the CVS password: "cvsanon" )
37
38	tcsh or csh shell:
39	$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
40	$ cvs login
41	( enter the CVS password: "cvsanon" )
42
43	cvs co MITgcm_contrib/high_res_cube/README_ice
44	cvs co MITgcm_contrib/high_res_cube/code-mods
45	cvs co MITgcm_contrib/high_res_cube/input
46	cvs co MITgcm_contrib/high_res_cube/results
47	cvs co MITgcm_code
48	cvs co MITgcm/verification/global_ocean.cs32x15
49	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
50
51
52	##########################################################################
53	##########################################################################
54	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
55	# requires input files in sudirectories run_template and ncep_rgau
56	# these can be obained from lou:/u/menemenl/cube
57
58	cd MITgcm/verification/global_ocean.cs32x15/code
59	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
60	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
61	\cp SIZE.h_216 SIZE.h
62	\cp packages.conf_hr packages.conf
63
64	cd ../build
65	\rm *
66	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
67	make depend
68	make -j
69
70	cd ..
71	mkdir run
72	cd run
73	\rm *
74	\cp ../input/* .
75	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
76	ln -sf ../../../../run_template/* .
77	\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
78	\rm bathy_Hmin50.bin 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
79	ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
80	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
81	\cp ../build/mitgcmuv .
82	qsub job_altix
83
84
85	##########################################################################
86	##########################################################################
87	# 32326*15, 1-cpu cube sphere
88
89	cd MITgcm/verification/global_ocean.cs32x15/code
90	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
91	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
92	cd ../build
93	\rm *
94	../../../tools/genmake2 -mods=../code
95	make depend
96	make
97	cd ..
98	mkdir run
99	cd run
100	\rm *
101	\cp ../../tutorial_held_suarez_cs/input/grid* .
102	\cp ../input/* .
103	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104	../build/mitgcmuv >& output.txt
105
106	comparison output is in:
107	../../../../MITgcm_contrib/high_res_cube/results/output.txt
108
109	to use matlab to look at the output
110	matlab
111
112	for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
113	'QNETtave','FVtave','FUtave','EmPmRtave'}
114	tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
115	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
116	end
117
118	heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
119	mask=0*heff; mask(find(heff>.001))=1;
120	uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
121	vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
122	clf
123	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
124	subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
125	subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
126	subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
127
128
129	##########################################################################
130	##########################################################################
131	# 32326*15, 17-tile, 1-cpu cube sphere experiment
132
133	cd MITgcm/verification/global_ocean.cs32x15/code
134	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135	\cp ../code_alt/code.176t_8x4/* .
136	cd ../build
137	\rm *
138	../../../tools/genmake2 -mods=../code
139	make depend
140	make
141	cd ..
142	mkdir run
143	cd run
144	\rm *
145	\cp ../../tutorial_held_suarez_cs/input/grid* .
146	\cp ../input/* .
147	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
148	../build/mitgcmuv >& output.txt
149
150
151	##########################################################################
152	##########################################################################
153	# 32326*15, 2-cpu cube sphere on the altices with ifort
154
155	cd MITgcm/verification/global_ocean.cs32x15/code
156	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
157	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
158	\cp SIZE.h_mpi SIZE.h
159
160	cd ../build
161	\rm *
162	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
163	make depend
164	make -j
165
166	cd ..
167	mkdir run
168	cd run
169	\rm *
170	\cp ../../tutorial_held_suarez_cs/input/grid* .
171	\cp ../input/* .
172	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
173	mpirun -np 2 ../build/mitgcmuv
174
175
176	##########################################################################
177	##########################################################################
178	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
179	# starting with pickup file from end of 1992
180	# requires input files in sudirectories run_template and ncep_rgau
181
182	cd MITgcm/verification/global_ocean.cs32x15/code
183	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
184	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
185	\cp packages.conf_hr packages.conf
186
187	cd ../build
188	\rm *
189	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
190	make depend
191	make -j
192
193	cd ..
194	mkdir run
195	cd run
196	\rm *
197	\cp ../input/* .
198	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
199	qsub job_altix92_54t
200
201
202	##########################################################################
203	##########################################################################
204	# 5105106*50, 1500-tile, 150-cpu, excludes land
205	# uses s1500t_17x51 configuration
206
207	cd MITgcm/verification/global_ocean.cs32x15/code
208	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
209	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
210	\cp SIZE.h_150 SIZE.h
211	\cp packages.conf_hr packages.conf
212
213	cd ../build
214	\rm *
215	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
216	make depend
217	make -j
218
219	cd ..
220	mkdir run
221	cd run
222	\rm *
223	\cp ../input/* .
224	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
225	ln -sf ../../../../run_template/* .
226	\rm pickup*
227	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
228	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
229	\cp ../build/mitgcmuv mitgcmuv150
230	qsub job_altix150
231
232
233	##########################################################################
234	##########################################################################
235	# 5105106*50, 1500-tile, 375-cpu, excludes land
236	# uses s1500t_17x51 configuration
237	# example for running on c17-c20 using arrayd
238
239	cd MITgcm/verification/global_ocean.cs32x15/code
240	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
241	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
242	\cp SIZE.h_375 SIZE.h
243	\cp packages.conf_hr packages.conf
244
245	cd ../build
246	\rm *
247	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
248	make depend
249	make -j
250
251	cd ..
252	mkdir run
253	cd run
254	\rm *
255	\cp ../input/* .
256	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
257	ln -sf ../../../../run_template/* .
258	\rm pickup*
259	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
260	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
261	\cp ../build/mitgcmuv .
262	job_c20_375cpu < /dev/null >&! output.run &
263
264
265	##########################################################################
266	##########################################################################
267	# 5105106*50, 1500-tile, 375-cpu, excludes land
268	# uses s1500t_17x51 configuration
269	# example for running on c17-c20 using arrayd
270
271	cd MITgcm/verification/global_ocean.cs32x15/code
272	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
273	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
274	\cp SIZE.h_375 SIZE.h
275	\cp packages.conf_hr packages.conf
276
277	cd ../build
278	\rm *
279	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
280	make depend
281	make -j
282
283	cd ..
284	mkdir run
285	cd run
286	\rm *
287	\cp ../input/* .
288	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
289	ln -sf ../../../../run_template/* .
290	\rm pickup*
291	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
292	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
293	\cp ../build/mitgcmuv .
294	job_c20_375cpu < /dev/null >&! output.run &
295
296
297	##########################################################################
298	##########################################################################
299	# 5105106*50, 1500-tile, 500-cpu, excludes land
300	# uses s1500t_17x51 configuration
301	# example for running on c17-c20 using arrayd
302
303	cd MITgcm/verification/global_ocean.cs32x15/code
304	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
305	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
306	\cp SIZE.h_500 SIZE.h
307	\cp packages.conf_hr packages.conf
308
309	cd ../build
310	\rm *
311	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
312	make depend
313	make -j
314
315	cd ..
316	mkdir run
317	cd run
318	\rm *
319	\cp ../input/* .
320	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
321	ln -sf ../../../../run_template/* .
322	\rm pickup*
323	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
324	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
325	\cp ../build/mitgcmuv .
326	job_c19_500cpu < /dev/null >&! output.run &
327
328
329	##########################################################################
330	##########################################################################
331	# 5105106*50, 216-cpu cube sphere on cosmos
332
333	cd MITgcm/verification/global_ocean.cs32x15/code
334	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
335	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
336	\cp SIZE.h_216 SIZE.h
337	\cp packages.conf_hr packages.conf
338
339	module unload latest_intel80
340	module unload mpich-gm-intel80
341	module load latest_intel81
342	module load mpich-gm-intel81
343
344	cd ../build
345	\rm *
346	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
347	make depend
348	make -j
349
350	cd ..
351	mkdir run
352	cd run
353	\rm *
354	\cp ../input/* .
355	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
356	ln -sf ../../../../run_template/* .
357	\rm pickup*
358	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
359	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
360	\cp ../build/mitgcmuv .
361	bsub < job_cosmos
362
363
364	##########################################################################
365	##########################################################################
366	# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
367	# requires input files in sudirectories run_template and ncep_rgau
368	# presently residing under orion:/tmp1/dmenem/cube
369
370	cd MITgcm/verification/global_ocean.cs32x15/code
371	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
372	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
373	\cp SIZE.h_54 SIZE.h
374	\cp packages.conf_hr packages.conf
375
376	cd ../build
377	\rm *
378	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
379	make depend
380	make -j
381
382	cd ..
383	mkdir run
384	cd run
385	\rm *
386	\cp ../input/* .
387	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
388	qsub job_orion
389
390
391	##########################################################################
392	##########################################################################
393	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
394	# requires input files in sudirectories run_template and ncep_rgau
395	# presently residing under orion:/tmp1/dmenem/cube
396
397	cd MITgcm/verification/global_ocean.cs32x15/code
398	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
399	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
400	\cp SIZE.h_41 SIZE.h
401	\cp packages.conf_hr packages.conf
402
403	cd ../build
404	\rm *
405	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
406	make depend
407	make -j
408
409	cd ..
410	mkdir run
411	cd run
412	\rm *
413	\cp ../input/* .
414	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
415	qsub job_orion41
416
417
418	##########################################################################
419	##########################################################################
420	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
421	# requires input files in sudirectories run_template and ncep_rgau
422	# presently residing under orion:/tmp1/dmenem/cube
423
424	cd MITgcm/verification/global_ocean.cs32x15/code
425	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
426	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
427	\cp SIZE.h_50 SIZE.h
428	\cp packages.conf_hr packages.conf
429
430	cd ../build
431	\rm *
432	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
433	make depend
434	make -j
435
436	cd ..
437	mkdir run
438	cd run
439	\rm *
440	\cp ../input/* .
441	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
442	qsub job_orion