Contents of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

=================
UPDATES

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F


##########################################################################
##########################################################################
# getting the code from anonymous CVS server
#

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
         'QNETtave','FVtave','FUtave','EmPmRtave'}
    tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
# requires input files in sudirectories run_template and ncep_rgau
# these can be obained from lou:/u/menemenl/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
\rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	Instructions for setting up a cube-sphere integration with sea-ice.
2
3	=================
4	UPDATES
5
6	October 15, 2006: 216-CPU code for cube40
7
8	September 28, 2006: 216-CPU code for cube38
9
10	September 4, 2006
11	Modified 3232615 experiments to use grid_cs32. files from
12	verification/tutorial_held_suarez_cs/input instead of
13	tile* files from verification/global_ocean.cs32x15/input
14
15	August 8, 2006: 216-CPU code and input used for cube37
16	using "June 10, 2006" MITgcm code.
17
18	for online T/S profile diagnostics all that is needed is
19	profiles_init_fixed
20	profiles_inloop
21	see pkg/ecco/ecco_cost_init_fixed.F
22	pkg/ecco/cost_averagesfields.F
23
24
25	##########################################################################
26	##########################################################################
27	# getting the code from anonymous CVS server
28	#
29
30	bash or sh shell:
31	$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
32	$ cvs login
33	( enter the CVS password: "cvsanon" )
34
35	tcsh or csh shell:
36	$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
37	$ cvs login
38	( enter the CVS password: "cvsanon" )
39
40	cvs co MITgcm_contrib/high_res_cube/README_ice
41	cvs co MITgcm_contrib/high_res_cube/code-mods
42	cvs co MITgcm_contrib/high_res_cube/input
43	cvs co MITgcm_contrib/high_res_cube/results
44	cvs co MITgcm_code
45	cvs co MITgcm/verification/global_ocean.cs32x15
46	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
47
48
49	##########################################################################
50	##########################################################################
51	# 32326*15, 1-cpu cube sphere
52
53	cd MITgcm/verification/global_ocean.cs32x15/code
54	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
55	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
56	cd ../build
57	\rm *
58	../../../tools/genmake2 -mods=../code
59	make depend
60	make
61	cd ..
62	mkdir run
63	cd run
64	\rm *
65	\cp ../../tutorial_held_suarez_cs/input/grid* .
66	\cp ../input/* .
67	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
68	../build/mitgcmuv >& output.txt
69
70	comparison output is in:
71	../../../../MITgcm_contrib/high_res_cube/results/output.txt
72
73	to use matlab to look at the output
74	matlab
75
76	for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
77	'QNETtave','FVtave','FUtave','EmPmRtave'}
78	tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
79	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
80	end
81
82	heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
83	mask=0*heff; mask(find(heff>.001))=1;
84	uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
85	vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
86	clf
87	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
88	subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
89	subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
90	subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
91
92
93	##########################################################################
94	##########################################################################
95	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
96	# requires input files in sudirectories run_template and ncep_rgau
97	# these can be obained from lou:/u/menemenl/cube
98
99	cd MITgcm/verification/global_ocean.cs32x15/code
100	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
101	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
102	\cp SIZE.h_216 SIZE.h
103	\cp packages.conf_hr packages.conf
104
105	cd ../build
106	\rm *
107	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
108	make depend
109	make -j
110
111	cd ..
112	mkdir run
113	cd run
114	\rm *
115	\cp ../input/* .
116	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
117	ln -sf ../../../../run_template/* .
118	\rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
119	\rm 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
120	ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
121	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
122	\cp ../build/mitgcmuv .
123	qsub job_altix
124
125
126	##########################################################################
127	##########################################################################
128	# 32326*15, 17-tile, 1-cpu cube sphere experiment
129
130	cd MITgcm/verification/global_ocean.cs32x15/code
131	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
132	\cp ../code_alt/code.176t_8x4/* .
133	cd ../build
134	\rm *
135	../../../tools/genmake2 -mods=../code
136	make depend
137	make
138	cd ..
139	mkdir run
140	cd run
141	\rm *
142	\cp ../../tutorial_held_suarez_cs/input/grid* .
143	\cp ../input/* .
144	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
145	../build/mitgcmuv >& output.txt
146
147
148	##########################################################################
149	##########################################################################
150	# 32326*15, 2-cpu cube sphere on the altices with ifort
151
152	cd MITgcm/verification/global_ocean.cs32x15/code
153	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
154	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
155	\cp SIZE.h_mpi SIZE.h
156
157	cd ../build
158	\rm *
159	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
160	make depend
161	make -j
162
163	cd ..
164	mkdir run
165	cd run
166	\rm *
167	\cp ../../tutorial_held_suarez_cs/input/grid* .
168	\cp ../input/* .
169	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
170	mpirun -np 2 ../build/mitgcmuv
171
172
173	##########################################################################
174	##########################################################################
175	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
176	# starting with pickup file from end of 1992
177	# requires input files in sudirectories run_template and ncep_rgau
178
179	cd MITgcm/verification/global_ocean.cs32x15/code
180	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
181	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
182	\cp packages.conf_hr packages.conf
183
184	cd ../build
185	\rm *
186	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
187	make depend
188	make -j
189
190	cd ..
191	mkdir run
192	cd run
193	\rm *
194	\cp ../input/* .
195	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
196	qsub job_altix92_54t
197
198
199	##########################################################################
200	##########################################################################
201	# 5105106*50, 1500-tile, 150-cpu, excludes land
202	# uses s1500t_17x51 configuration
203
204	cd MITgcm/verification/global_ocean.cs32x15/code
205	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
206	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
207	\cp SIZE.h_150 SIZE.h
208	\cp packages.conf_hr packages.conf
209
210	cd ../build
211	\rm *
212	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
213	make depend
214	make -j
215
216	cd ..
217	mkdir run
218	cd run
219	\rm *
220	\cp ../input/* .
221	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
222	ln -sf ../../../../run_template/* .
223	\rm pickup*
224	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
225	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
226	\cp ../build/mitgcmuv mitgcmuv150
227	qsub job_altix150
228
229
230	##########################################################################
231	##########################################################################
232	# 5105106*50, 1500-tile, 375-cpu, excludes land
233	# uses s1500t_17x51 configuration
234	# example for running on c17-c20 using arrayd
235
236	cd MITgcm/verification/global_ocean.cs32x15/code
237	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
238	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
239	\cp SIZE.h_375 SIZE.h
240	\cp packages.conf_hr packages.conf
241
242	cd ../build
243	\rm *
244	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
245	make depend
246	make -j
247
248	cd ..
249	mkdir run
250	cd run
251	\rm *
252	\cp ../input/* .
253	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
254	ln -sf ../../../../run_template/* .
255	\rm pickup*
256	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
257	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
258	\cp ../build/mitgcmuv .
259	job_c20_375cpu < /dev/null >&! output.run &
260
261
262	##########################################################################
263	##########################################################################
264	# 5105106*50, 1500-tile, 375-cpu, excludes land
265	# uses s1500t_17x51 configuration
266	# example for running on c17-c20 using arrayd
267
268	cd MITgcm/verification/global_ocean.cs32x15/code
269	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
270	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
271	\cp SIZE.h_375 SIZE.h
272	\cp packages.conf_hr packages.conf
273
274	cd ../build
275	\rm *
276	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
277	make depend
278	make -j
279
280	cd ..
281	mkdir run
282	cd run
283	\rm *
284	\cp ../input/* .
285	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
286	ln -sf ../../../../run_template/* .
287	\rm pickup*
288	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
289	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
290	\cp ../build/mitgcmuv .
291	job_c20_375cpu < /dev/null >&! output.run &
292
293
294	##########################################################################
295	##########################################################################
296	# 5105106*50, 1500-tile, 500-cpu, excludes land
297	# uses s1500t_17x51 configuration
298	# example for running on c17-c20 using arrayd
299
300	cd MITgcm/verification/global_ocean.cs32x15/code
301	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
302	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
303	\cp SIZE.h_500 SIZE.h
304	\cp packages.conf_hr packages.conf
305
306	cd ../build
307	\rm *
308	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
309	make depend
310	make -j
311
312	cd ..
313	mkdir run
314	cd run
315	\rm *
316	\cp ../input/* .
317	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
318	ln -sf ../../../../run_template/* .
319	\rm pickup*
320	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
321	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
322	\cp ../build/mitgcmuv .
323	job_c19_500cpu < /dev/null >&! output.run &
324
325
326	##########################################################################
327	##########################################################################
328	# 5105106*50, 216-cpu cube sphere on cosmos
329
330	cd MITgcm/verification/global_ocean.cs32x15/code
331	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
332	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
333	\cp SIZE.h_216 SIZE.h
334	\cp packages.conf_hr packages.conf
335
336	module unload latest_intel80
337	module unload mpich-gm-intel80
338	module load latest_intel81
339	module load mpich-gm-intel81
340
341	cd ../build
342	\rm *
343	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
344	make depend
345	make -j
346
347	cd ..
348	mkdir run
349	cd run
350	\rm *
351	\cp ../input/* .
352	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
353	ln -sf ../../../../run_template/* .
354	\rm pickup*
355	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
356	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
357	\cp ../build/mitgcmuv .
358	bsub < job_cosmos
359
360
361	##########################################################################
362	##########################################################################
363	# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
364	# requires input files in sudirectories run_template and ncep_rgau
365	# presently residing under orion:/tmp1/dmenem/cube
366
367	cd MITgcm/verification/global_ocean.cs32x15/code
368	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
369	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
370	\cp SIZE.h_54 SIZE.h
371	\cp packages.conf_hr packages.conf
372
373	cd ../build
374	\rm *
375	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
376	make depend
377	make -j
378
379	cd ..
380	mkdir run
381	cd run
382	\rm *
383	\cp ../input/* .
384	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
385	qsub job_orion
386
387
388	##########################################################################
389	##########################################################################
390	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
391	# requires input files in sudirectories run_template and ncep_rgau
392	# presently residing under orion:/tmp1/dmenem/cube
393
394	cd MITgcm/verification/global_ocean.cs32x15/code
395	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
396	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
397	\cp SIZE.h_41 SIZE.h
398	\cp packages.conf_hr packages.conf
399
400	cd ../build
401	\rm *
402	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
403	make depend
404	make -j
405
406	cd ..
407	mkdir run
408	cd run
409	\rm *
410	\cp ../input/* .
411	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
412	qsub job_orion41
413
414
415	##########################################################################
416	##########################################################################
417	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
418	# requires input files in sudirectories run_template and ncep_rgau
419	# presently residing under orion:/tmp1/dmenem/cube
420
421	cd MITgcm/verification/global_ocean.cs32x15/code
422	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
423	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
424	\cp SIZE.h_50 SIZE.h
425	\cp packages.conf_hr packages.conf
426
427	cd ../build
428	\rm *
429	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
430	make depend
431	make -j
432
433	cd ..
434	mkdir run
435	cd run
436	\rm *
437	\cp ../input/* .
438	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
439	qsub job_orion