| 1 |
Instructions for setting up a cube-sphere integration with sea-ice. |
| 2 |
|
| 3 |
September 28, 2006: 216-CPU code for cube38 |
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|
| 5 |
September 4, 2006 |
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Modified 32*32*6*15 experiments to use grid_cs32.* files from |
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verification/tutorial_held_suarez_cs/input instead of |
| 8 |
tile* files from verification/global_ocean.cs32x15/input |
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|
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August 8, 2006 |
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216-CPU code and input used for integrating cube37 |
| 12 |
using "June 10, 2006" MITgcm code. |
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|
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|
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########################################################################## |
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########################################################################## |
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# getting the code from anonymous CVS server |
| 18 |
|
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cvs co MITgcm_contrib/high_res_cube/README_ice |
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cvs co MITgcm_contrib/high_res_cube/code-mods |
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cvs co MITgcm_contrib/high_res_cube/input |
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cvs co MITgcm_contrib/high_res_cube/results |
| 23 |
cvs co MITgcm_code |
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cvs co MITgcm/verification/global_ocean.cs32x15 |
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cvs co MITgcm/verification/tutorial_held_suarez_cs/input |
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|
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|
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########################################################################## |
| 29 |
########################################################################## |
| 30 |
# 32*32*6*15, 1-cpu cube sphere |
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|
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cd MITgcm/verification/global_ocean.cs32x15/code |
| 33 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 34 |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
| 35 |
cd ../build |
| 36 |
\rm * |
| 37 |
../../../tools/genmake2 -mods=../code |
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make depend |
| 39 |
make |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
| 44 |
\cp ../../tutorial_held_suarez_cs/input/grid* . |
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\cp ../input/* . |
| 46 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 47 |
../build/mitgcmuv >& output.txt |
| 48 |
|
| 49 |
comparison output is in: |
| 50 |
../../../../MITgcm_contrib/high_res_cube/results/output.txt |
| 51 |
|
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to use matlab to look at the output |
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matlab |
| 54 |
|
| 55 |
for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ... |
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'QNETtave','FVtave','FUtave','EmPmRtave'} |
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tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]); |
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cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
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end |
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|
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heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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mask=0*heff; mask(find(heff>.001))=1; |
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uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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clf |
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subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3') |
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subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6') |
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subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3') |
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subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6') |
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|
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|
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########################################################################## |
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########################################################################## |
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# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment |
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|
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../code_alt/code.176t_8x4/* . |
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code |
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make depend |
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make |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../../tutorial_held_suarez_cs/input/grid* . |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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../build/mitgcmuv >& output.txt |
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|
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|
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########################################################################## |
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########################################################################## |
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# 32*32*6*15, 2-cpu cube sphere on the altices with ifort |
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|
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
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\cp SIZE.h_mpi SIZE.h |
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|
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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|
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../../tutorial_held_suarez_cs/input/grid* . |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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mpirun -np 2 ../build/mitgcmuv |
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|
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|
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########################################################################## |
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########################################################################## |
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# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc |
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# starting with pickup file from end of 1992 |
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# requires input files in sudirectories run_template and ncep_rgau |
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|
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* . |
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\cp packages.conf_hr packages.conf |
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|
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 133 |
make depend |
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make -j |
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|
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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qsub job_altix92_54t |
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|
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|
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########################################################################## |
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########################################################################## |
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# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics |
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# requires input files in sudirectories run_template and ncep_rgau |
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# these can be obained from lou:/u/menemenl/cube |
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|
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
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\cp SIZE.h_216 SIZE.h |
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\cp packages.conf_hr packages.conf |
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|
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
| 160 |
make depend |
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make -j |
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|
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../../../run_template/* . |
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\rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin |
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\rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t |
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ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216 |
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ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216 |
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\cp ../build/mitgcmuv . |
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qsub job_altix |
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|
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|
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########################################################################## |
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########################################################################## |
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# 510*510*6*50, 1500-tile, 150-cpu, excludes land |
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# uses s1500t_17x51 configuration |
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|
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
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\cp SIZE.h_150 SIZE.h |
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\cp packages.conf_hr packages.conf |
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|
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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|
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../../../run_template/* . |
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\rm pickup* |
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ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
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\cp ../build/mitgcmuv mitgcmuv150 |
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qsub job_altix150 |
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|
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|
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|
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|
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########################################################################## |
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########################################################################## |
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# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
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# uses s1500t_17x51 configuration |
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# example for running on c17-c20 using arrayd |
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|
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
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\cp SIZE.h_375 SIZE.h |
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\cp packages.conf_hr packages.conf |
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|
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
| 226 |
make depend |
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make -j |
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|
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../../../run_template/* . |
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\rm pickup* |
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ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
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\cp ../build/mitgcmuv . |
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job_c20_375cpu < /dev/null >&! output.run & |
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|
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|
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########################################################################## |
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########################################################################## |
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# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
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# uses s1500t_17x51 configuration |
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# example for running on c17-c20 using arrayd |
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|
| 259 |
cd MITgcm/verification/global_ocean.cs32x15/code |
| 260 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
| 262 |
\cp SIZE.h_375 SIZE.h |
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\cp packages.conf_hr packages.conf |
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|
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cd ../build |
| 266 |
\rm * |
| 267 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
| 268 |
make depend |
| 269 |
make -j |
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|
| 271 |
cd .. |
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mkdir run |
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cd run |
| 274 |
\rm * |
| 275 |
\cp ../input/* . |
| 276 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 277 |
ln -sf ../../../../run_template/* . |
| 278 |
\rm pickup* |
| 279 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
| 280 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
| 281 |
\cp ../build/mitgcmuv . |
| 282 |
job_c20_375cpu < /dev/null >&! output.run & |
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|
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|
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########################################################################## |
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########################################################################## |
| 287 |
# 510*510*6*50, 1500-tile, 500-cpu, excludes land |
| 288 |
# uses s1500t_17x51 configuration |
| 289 |
# example for running on c17-c20 using arrayd |
| 290 |
|
| 291 |
cd MITgcm/verification/global_ocean.cs32x15/code |
| 292 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 293 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
| 294 |
\cp SIZE.h_500 SIZE.h |
| 295 |
\cp packages.conf_hr packages.conf |
| 296 |
|
| 297 |
cd ../build |
| 298 |
\rm * |
| 299 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
| 300 |
make depend |
| 301 |
make -j |
| 302 |
|
| 303 |
cd .. |
| 304 |
mkdir run |
| 305 |
cd run |
| 306 |
\rm * |
| 307 |
\cp ../input/* . |
| 308 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 309 |
ln -sf ../../../../run_template/* . |
| 310 |
\rm pickup* |
| 311 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
| 312 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
| 313 |
\cp ../build/mitgcmuv . |
| 314 |
job_c19_500cpu < /dev/null >&! output.run & |
| 315 |
|
| 316 |
|
| 317 |
|
| 318 |
|
| 319 |
|
| 320 |
########################################################################## |
| 321 |
########################################################################## |
| 322 |
# 510*510*6*50, 216-cpu cube sphere on cosmos |
| 323 |
|
| 324 |
cd MITgcm/verification/global_ocean.cs32x15/code |
| 325 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 326 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
| 327 |
\cp SIZE.h_216 SIZE.h |
| 328 |
\cp packages.conf_hr packages.conf |
| 329 |
|
| 330 |
module unload latest_intel80 |
| 331 |
module unload mpich-gm-intel80 |
| 332 |
module load latest_intel81 |
| 333 |
module load mpich-gm-intel81 |
| 334 |
|
| 335 |
cd ../build |
| 336 |
\rm * |
| 337 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos |
| 338 |
make depend |
| 339 |
make -j |
| 340 |
|
| 341 |
cd .. |
| 342 |
mkdir run |
| 343 |
cd run |
| 344 |
\rm * |
| 345 |
\cp ../input/* . |
| 346 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 347 |
ln -sf ../../../../run_template/* . |
| 348 |
\rm pickup* |
| 349 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
| 350 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
| 351 |
\cp ../build/mitgcmuv . |
| 352 |
bsub < job_cosmos |
| 353 |
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| 355 |
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| 357 |
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########################################################################## |
| 374 |
########################################################################## |
| 375 |
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc |
| 376 |
# requires input files in sudirectories run_template and ncep_rgau |
| 377 |
# presently residing under orion:/tmp1/dmenem/cube |
| 378 |
|
| 379 |
cd MITgcm/verification/global_ocean.cs32x15/code |
| 380 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 381 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
| 382 |
\cp SIZE.h_54 SIZE.h |
| 383 |
\cp packages.conf_hr packages.conf |
| 384 |
|
| 385 |
cd ../build |
| 386 |
\rm * |
| 387 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 388 |
make depend |
| 389 |
make -j |
| 390 |
|
| 391 |
cd .. |
| 392 |
mkdir run |
| 393 |
cd run |
| 394 |
\rm * |
| 395 |
\cp ../input/* . |
| 396 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 397 |
qsub job_orion |
| 398 |
|
| 399 |
|
| 400 |
########################################################################## |
| 401 |
########################################################################## |
| 402 |
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc |
| 403 |
# requires input files in sudirectories run_template and ncep_rgau |
| 404 |
# presently residing under orion:/tmp1/dmenem/cube |
| 405 |
|
| 406 |
cd MITgcm/verification/global_ocean.cs32x15/code |
| 407 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 408 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* . |
| 409 |
\cp SIZE.h_41 SIZE.h |
| 410 |
\cp packages.conf_hr packages.conf |
| 411 |
|
| 412 |
cd ../build |
| 413 |
\rm * |
| 414 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 415 |
make depend |
| 416 |
make -j |
| 417 |
|
| 418 |
cd .. |
| 419 |
mkdir run |
| 420 |
cd run |
| 421 |
\rm * |
| 422 |
\cp ../input/* . |
| 423 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 424 |
qsub job_orion41 |
| 425 |
|
| 426 |
|
| 427 |
########################################################################## |
| 428 |
########################################################################## |
| 429 |
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc |
| 430 |
# requires input files in sudirectories run_template and ncep_rgau |
| 431 |
# presently residing under orion:/tmp1/dmenem/cube |
| 432 |
|
| 433 |
cd MITgcm/verification/global_ocean.cs32x15/code |
| 434 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 435 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
| 436 |
\cp SIZE.h_50 SIZE.h |
| 437 |
\cp packages.conf_hr packages.conf |
| 438 |
|
| 439 |
cd ../build |
| 440 |
\rm * |
| 441 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 442 |
make depend |
| 443 |
make -j |
| 444 |
|
| 445 |
cd .. |
| 446 |
mkdir run |
| 447 |
cd run |
| 448 |
\rm * |
| 449 |
\cp ../input/* . |
| 450 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 451 |
qsub job_orion |
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