Contents of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.
Date last updated: June 10, 2006
216-CPU code and input used for integrating cube37.


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
         'QNETtave','FVtave','FUtave','EmPmRtave'}
    tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
# requires input files in sudirectories run_template and ncep_rgau
# these can be obained from lou:/u/menemenl/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* data.pkg data.seaice data.exf_clim data.exf data
\rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	Instructions for setting up a cube-sphere integration with sea-ice.
2	Date last updated: June 10, 2006
3	216-CPU code and input used for integrating cube37.
4
5
6	##########################################################################
7	##########################################################################
8	# getting the code from anonymous CVS server
9
10	cvs co MITgcm_contrib/high_res_cube/README_ice
11	cvs co MITgcm_contrib/high_res_cube/code-mods
12	cvs co MITgcm_contrib/high_res_cube/input
13	cvs co MITgcm_contrib/high_res_cube/results
14	cvs co MITgcm_code
15	cvs co MITgcm/verification/global_ocean.cs32x15
16
17
18	##########################################################################
19	##########################################################################
20	# 32326*15, 1-cpu cube sphere
21
22	cd MITgcm/verification/global_ocean.cs32x15/code
23	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
24	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
25	cd ../build
26	\rm *
27	../../../tools/genmake2 -mods=../code
28	make depend
29	make
30	cd ..
31	mkdir run
32	cd run
33	\rm *
34	\cp ../input/* .
35	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
36	../build/mitgcmuv >& output.txt
37
38	comparison output is in:
39	../../../../MITgcm_contrib/high_res_cube/results/output.txt
40
41	to use matlab to look at the output
42	matlab
43
44	for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
45	'QNETtave','FVtave','FUtave','EmPmRtave'}
46	tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48	end
49
50	heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
51	mask=0*heff; mask(find(heff>.001))=1;
52	uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
53	vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
54	clf
55	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
56	subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
57	subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
58	subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
59
60
61	##########################################################################
62	##########################################################################
63	# 32326*15, 17-tile, 1-cpu cube sphere experiment
64
65	cd MITgcm/verification/global_ocean.cs32x15/code
66	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
67	\cp ../code_alt/code.176t_8x4/* .
68	cd ../build
69	\rm *
70	../../../tools/genmake2 -mods=../code
71	make depend
72	make
73	cd ..
74	mkdir run
75	cd run
76	\rm *
77	\cp ../input/* .
78	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79	../build/mitgcmuv >& output.txt
80
81
82	##########################################################################
83	##########################################################################
84	# 32326*15, 2-cpu cube sphere on the altices with ifort
85
86	cd MITgcm/verification/global_ocean.cs32x15/code
87	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
88	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
89	\cp SIZE.h_mpi SIZE.h
90
91	cd ../build
92	\rm *
93	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
94	make depend
95	make -j
96
97	cd ..
98	mkdir run
99	cd run
100	\rm *
101	\cp ../input/* .
102	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
103	mpirun -np 2 ../build/mitgcmuv
104
105
106	##########################################################################
107	##########################################################################
108	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
109	# starting with pickup file from end of 1992
110	# requires input files in sudirectories run_template and ncep_rgau
111
112	cd MITgcm/verification/global_ocean.cs32x15/code
113	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
114	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
115	\cp packages.conf_hr packages.conf
116
117	cd ../build
118	\rm *
119	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
120	make depend
121	make -j
122
123	cd ..
124	mkdir run
125	cd run
126	\rm *
127	\cp ../input/* .
128	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
129	qsub job_altix92_54t
130
131
132	##########################################################################
133	##########################################################################
134	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
135	# requires input files in sudirectories run_template and ncep_rgau
136	# these can be obained from lou:/u/menemenl/cube
137
138	cd MITgcm/verification/global_ocean.cs32x15/code
139	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
140	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
141	\cp SIZE.h_216 SIZE.h
142	\cp packages.conf_hr packages.conf
143
144	cd ../build
145	\rm *
146	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
147	make depend
148	make -j
149
150	cd ..
151	mkdir run
152	cd run
153	\rm *
154	\cp ../input/* .
155	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
156	ln -sf ../../../../run_template/* .
157	\rm pickup* data.pkg data.seaice data.exf_clim data.exf data
158	\rm 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
159	ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216
160	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216
161	\cp ../build/mitgcmuv .
162	qsub job_altix
163
164
165	##########################################################################
166	##########################################################################
167	# 5105106*50, 1500-tile, 150-cpu, excludes land
168	# uses s1500t_17x51 configuration
169
170	cd MITgcm/verification/global_ocean.cs32x15/code
171	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
172	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
173	\cp SIZE.h_150 SIZE.h
174	\cp packages.conf_hr packages.conf
175
176	cd ../build
177	\rm *
178	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
179	make depend
180	make -j
181
182	cd ..
183	mkdir run
184	cd run
185	\rm *
186	\cp ../input/* .
187	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
188	ln -sf ../../../../run_template/* .
189	\rm pickup*
190	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
191	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
192	\cp ../build/mitgcmuv mitgcmuv150
193	qsub job_altix150
194
195
196
197
198	##########################################################################
199	##########################################################################
200	# 5105106*50, 1500-tile, 375-cpu, excludes land
201	# uses s1500t_17x51 configuration
202	# example for running on c17-c20 using arrayd
203
204	cd MITgcm/verification/global_ocean.cs32x15/code
205	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
206	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
207	\cp SIZE.h_375 SIZE.h
208	\cp packages.conf_hr packages.conf
209
210	cd ../build
211	\rm *
212	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
213	make depend
214	make -j
215
216	cd ..
217	mkdir run
218	cd run
219	\rm *
220	\cp ../input/* .
221	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
222	ln -sf ../../../../run_template/* .
223	\rm pickup*
224	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
225	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
226	\cp ../build/mitgcmuv .
227	job_c20_375cpu < /dev/null >&! output.run &
228
229
230
231
232
233
234
235
236
237
238
239
240	##########################################################################
241	##########################################################################
242	# 5105106*50, 1500-tile, 375-cpu, excludes land
243	# uses s1500t_17x51 configuration
244	# example for running on c17-c20 using arrayd
245
246	cd MITgcm/verification/global_ocean.cs32x15/code
247	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
248	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
249	\cp SIZE.h_375 SIZE.h
250	\cp packages.conf_hr packages.conf
251
252	cd ../build
253	\rm *
254	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
255	make depend
256	make -j
257
258	cd ..
259	mkdir run
260	cd run
261	\rm *
262	\cp ../input/* .
263	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
264	ln -sf ../../../../run_template/* .
265	\rm pickup*
266	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
267	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
268	\cp ../build/mitgcmuv .
269	job_c20_375cpu < /dev/null >&! output.run &
270
271
272	##########################################################################
273	##########################################################################
274	# 5105106*50, 1500-tile, 500-cpu, excludes land
275	# uses s1500t_17x51 configuration
276	# example for running on c17-c20 using arrayd
277
278	cd MITgcm/verification/global_ocean.cs32x15/code
279	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
280	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
281	\cp SIZE.h_500 SIZE.h
282	\cp packages.conf_hr packages.conf
283
284	cd ../build
285	\rm *
286	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
287	make depend
288	make -j
289
290	cd ..
291	mkdir run
292	cd run
293	\rm *
294	\cp ../input/* .
295	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
296	ln -sf ../../../../run_template/* .
297	\rm pickup*
298	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
299	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
300	\cp ../build/mitgcmuv .
301	job_c19_500cpu < /dev/null >&! output.run &
302
303
304
305
306
307	##########################################################################
308	##########################################################################
309	# 5105106*50, 216-cpu cube sphere on cosmos
310
311	cd MITgcm/verification/global_ocean.cs32x15/code
312	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
313	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
314	\cp SIZE.h_216 SIZE.h
315	\cp packages.conf_hr packages.conf
316
317	module unload latest_intel80
318	module unload mpich-gm-intel80
319	module load latest_intel81
320	module load mpich-gm-intel81
321
322	cd ../build
323	\rm *
324	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
325	make depend
326	make -j
327
328	cd ..
329	mkdir run
330	cd run
331	\rm *
332	\cp ../input/* .
333	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
334	ln -sf ../../../../run_template/* .
335	\rm pickup*
336	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
337	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
338	\cp ../build/mitgcmuv .
339	bsub < job_cosmos
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360	##########################################################################
361	##########################################################################
362	# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
363	# requires input files in sudirectories run_template and ncep_rgau
364	# presently residing under orion:/tmp1/dmenem/cube
365
366	cd MITgcm/verification/global_ocean.cs32x15/code
367	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
368	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
369	\cp SIZE.h_54 SIZE.h
370	\cp packages.conf_hr packages.conf
371
372	cd ../build
373	\rm *
374	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
375	make depend
376	make -j
377
378	cd ..
379	mkdir run
380	cd run
381	\rm *
382	\cp ../input/* .
383	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
384	qsub job_orion
385
386
387	##########################################################################
388	##########################################################################
389	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
390	# requires input files in sudirectories run_template and ncep_rgau
391	# presently residing under orion:/tmp1/dmenem/cube
392
393	cd MITgcm/verification/global_ocean.cs32x15/code
394	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
395	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
396	\cp SIZE.h_41 SIZE.h
397	\cp packages.conf_hr packages.conf
398
399	cd ../build
400	\rm *
401	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
402	make depend
403	make -j
404
405	cd ..
406	mkdir run
407	cd run
408	\rm *
409	\cp ../input/* .
410	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
411	qsub job_orion41
412
413
414	##########################################################################
415	##########################################################################
416	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
417	# requires input files in sudirectories run_template and ncep_rgau
418	# presently residing under orion:/tmp1/dmenem/cube
419
420	cd MITgcm/verification/global_ocean.cs32x15/code
421	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
422	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
423	\cp SIZE.h_50 SIZE.h
424	\cp packages.conf_hr packages.conf
425
426	cd ../build
427	\rm *
428	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
429	make depend
430	make -j
431
432	cd ..
433	mkdir run
434	cd run
435	\rm *
436	\cp ../input/* .
437	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
438	qsub job_orion