Instructions for setting up a cube-sphere integration with sea-ice.
Date last tested: December 11, 2003.


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# 32*32*6*15, 1-cpu cube sphere

setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
cvs login ( CVS password: cvsanon )
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results
cvs co -r checkpoint52d_pre MITgcm_code
cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
\rm mdsio_readfield.F

cd ..
mkdir build
cd build
../../../tools/genmake2 -mods=../code
make depend
make

cd ..
mkdir run
cd run
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab
for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
    tmp=permute(readbin([fld{1} '.0000001368.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end


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# 32*32*6*15, 2-cpu cube sphere on the altices with efc

setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
cvs login ( CVS password: cvsanon )
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results
cvs co -r checkpoint52d_pre MITgcm_code
cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
\rm mdsio_readfield.F

cd ..
mkdir build
cd build
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
make depend
make

cd ..
mkdir run
cd run
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


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# 510*510*6*50, 54-cpu cube sphere on the altices with efc

setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
cvs login ( CVS password: cvsanon )
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results
cvs co -r checkpoint52d_pre MITgcm_code
cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
\cp packages.conf_hr packages.conf
\rm mdsio_readfield.F

cd ..
mkdir build
cd build
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
make depend
make

cd ..
mkdir run
cd run
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
\cp data_hr data
\cp data.pkg_hr data.pkg
\ln -sf ../../../../run_template/tile00* .
\ln -sf ../../../../run_template/LEV* .
\ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .
qsub job_orion


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# 510*510*6*50, 216-cpu cube sphere on the altices with efc

setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
cvs login ( CVS password: cvsanon )
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results
cvs co -r checkpoint52d_pre MITgcm_code
cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
\cp packages.conf_hr packages.conf
\rm mdsio_readfield.F

cd ..
mkdir build
cd build
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
make depend
make

cd ..
mkdir run
cd run
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
\cp data_hr data
\cp data.pkg_hr data.pkg
\ln -sf ../../../../run_template/tile00* .
\ln -sf ../../../../run_template/LEV* .
\ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .
qsub job_altix