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revision 1.59 by dimitri, Tue May 3 16:07:36 2005 UTC revision 1.67 by dimitri, Wed Oct 4 17:47:26 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  
3  Code and input used for integrating cube22.  September 28, 2006: 216-CPU code for cube38
4    
5    September 4, 2006
6    Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10    August 8, 2006
11    216-CPU code and input used for integrating cube37
12    using "June 10, 2006" MITgcm code.
13    
14    for online T/S profile diagnostics all that is needed is
15      profiles_init_fixed
16      profiles_inloop
17    see pkg/ecco/ecco_cost_init_fixed.F
18        pkg/ecco/cost_averagesfields.F
19    
20    
21  ##########################################################################  ##########################################################################
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 28  cvs co MITgcm_contrib/high_res_cube/inpu
28  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
29  cvs co MITgcm_code  cvs co MITgcm_code
30  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
31  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/tutorial_held_suarez_cs/input
32    
33    
34  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 47  cd ..
47  mkdir run  mkdir run
48  cd run  cd run
49  \rm *  \rm *
50    \cp ../../tutorial_held_suarez_cs/input/grid* .
51  \cp ../input/* .  \cp ../input/* .
52  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
53  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 61  subplot(224), mypcolor(vice(:,:,6)'); co Line 77  subplot(224), mypcolor(vice(:,:,6)'); co
77    
78  ##########################################################################  ##########################################################################
79  ##########################################################################  ##########################################################################
80    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
81    # requires input files in sudirectories run_template and ncep_rgau
82    # these can be obained from lou:/u/menemenl/cube
83    
84    cd MITgcm/verification/global_ocean.cs32x15/code
85    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
86    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
87    \cp SIZE.h_216 SIZE.h
88    \cp packages.conf_hr packages.conf
89    
90    cd ../build
91    \rm *
92    ../../../tools/genmake2 -mods=../code -of
93    ../../../tools/build_options/linux_ia\
94    64_ifort+mpi_altix_nas
95    make depend
96    make -j
97    
98    cd ..
99    mkdir run
100    cd run
101    \rm *
102    \cp ../input/* .
103    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104    ln -sf ../../../../run_template/* .
105    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
106    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
107    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
108    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38
109    pickup_seaice.\
110    0000000216
111    \cp ../build/mitgcmuv .
112    qsub job_altix
113    
114    
115    ##########################################################################
116    ##########################################################################
117  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
118    
119  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
# Line 75  cd .. Line 128  cd ..
128  mkdir run  mkdir run
129  cd run  cd run
130  \rm *  \rm *
131    \cp ../../tutorial_held_suarez_cs/input/grid* .
132  \cp ../input/* .  \cp ../input/* .
133  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
134  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 99  cd .. Line 153  cd ..
153  mkdir run  mkdir run
154  cd run  cd run
155  \rm *  \rm *
156    \cp ../../tutorial_held_suarez_cs/input/grid* .
157  \cp ../input/* .  \cp ../input/* .
158  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
159  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 132  qsub job_altix92_54t Line 187  qsub job_altix92_54t
187    
188  ##########################################################################  ##########################################################################
189  ##########################################################################  ##########################################################################
190  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
191  # requires input files in sudirectories run_template and ncep_rgau  # uses s1500t_17x51 configuration
 # these can be obained from lou:/u/menemenl/cube  
192    
193  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
194  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
195  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
196  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_150 SIZE.h
197  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
198    
199  cd ../build  cd ../build
# Line 156  cd run Line 210  cd run
210  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
211  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
212  \rm pickup*  \rm pickup*
213  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
214  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
215  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv mitgcmuv150
216  qsub job_altix  qsub job_altix150
217    
218    
219  ##########################################################################  ##########################################################################
220  ##########################################################################  ##########################################################################
221  # 510*510*6*50, 1500-tile, 150-cpu, excludes land  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
222  # uses s1500t_17x51 configuration  # uses s1500t_17x51 configuration
223    # example for running on c17-c20 using arrayd
224    
225  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
226  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
227  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
228  \cp SIZE.h_150 SIZE.h  \cp SIZE.h_375 SIZE.h
229  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
230    
231  cd ../build  cd ../build
# Line 186  cd run Line 242  cd run
242  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
243  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
244  \rm pickup*  \rm pickup*
245  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
246  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
247  \cp ../build/mitgcmuv mitgcmuv150  \cp ../build/mitgcmuv .
248  qsub job_altix150  job_c20_375cpu < /dev/null >&! output.run &
   
   
   
   
   
   
   
   
   
   
   
   
   
249    
250    
251  ##########################################################################  ##########################################################################
# Line 231  cd run Line 274  cd run
274  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
275  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
276  \rm pickup*  \rm pickup*
277  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
278  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
279  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
280  job_c20_375cpu < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
281    
# Line 263  cd run Line 306  cd run
306  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
307  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
308  \rm pickup*  \rm pickup*
309  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
310  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
311  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
312  job_c19_500cpu < /dev/null >&! output.run &  job_c19_500cpu < /dev/null >&! output.run &
313    
314    
315    ##########################################################################
316    ##########################################################################
317    # 510*510*6*50, 216-cpu cube sphere on cosmos
318    
319    cd MITgcm/verification/global_ocean.cs32x15/code
320    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
321    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
322    \cp SIZE.h_216 SIZE.h
323    \cp packages.conf_hr packages.conf
324    
325    module unload latest_intel80
326    module unload mpich-gm-intel80
327    module load latest_intel81
328    module load mpich-gm-intel81
329    
330    cd ../build
331    \rm *
332    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
333    make depend
334    make -j
335    
336    cd ..
337    mkdir run
338    cd run
339    \rm *
340    \cp ../input/* .
341    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
342    ln -sf ../../../../run_template/* .
343    \rm pickup*
344    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
345    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
346    \cp ../build/mitgcmuv .
347    bsub < job_cosmos
   
   
   
   
348    
349    
350  ##########################################################################  ##########################################################################
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