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revision 1.59 by dimitri, Tue May 3 16:07:36 2005 UTC revision 1.62 by dimitri, Sat Feb 25 16:59:00 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  Date last updated: February 25, 2005
3  Code and input used for integrating cube22.  216-CPU code and input used for integrating cube29.
4    
5    
6  ##########################################################################  ##########################################################################
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 13  cvs co MITgcm_contrib/high_res_cube/inpu
13  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co MITgcm_code  cvs co MITgcm_code
15  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
16  cvs co MITgcm/verification/testreport  
17    # remove check in config_check.F
18    > C-TRM     IF ( highOrderVorticity .AND. useCubedSphereExchange ) THEN
19    > C-TRM       WRITE(msgBuf,'(2A)')
20    > C-TRM    &   'CONFIG_CHECK: highOrderVorticity Scheme does not work',
21    > C-TRM    &   ' on CubedSphere grid'
22    > C-TRM       CALL PRINT_ERROR( msgBuf , myThid)
23    > C-TRM       STOP 'ABNORMAL END: S/R CONFIG_CHECK'
24    > C-TRM     ENDIF
25    
26    
27  ##########################################################################  ##########################################################################
# Line 156  cd run Line 164  cd run
164  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
165  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
166  \rm pickup*  \rm pickup*
167  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216
168  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216
169  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
170  qsub job_altix  qsub job_altix
171    
172    
173  ##########################################################################  ##########################################################################
174  ##########################################################################  ##########################################################################
175  # 510*510*6*50, 1500-tile, 150-cpu, excludes land  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
# Line 186  cd run Line 195  cd run
195  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
196  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
197  \rm pickup*  \rm pickup*
198  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
199  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
200  \cp ../build/mitgcmuv mitgcmuv150  \cp ../build/mitgcmuv mitgcmuv150
201  qsub job_altix150  qsub job_altix150
202    
203    
204    
205    
206    ##########################################################################
207    ##########################################################################
208    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
209    # uses s1500t_17x51 configuration
210    # example for running on c17-c20 using arrayd
211    
212    cd MITgcm/verification/global_ocean.cs32x15/code
213    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
214    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
215    \cp SIZE.h_375 SIZE.h
216    \cp packages.conf_hr packages.conf
217    
218    cd ../build
219    \rm *
220    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
221    make depend
222    make -j
223    
224    cd ..
225    mkdir run
226    cd run
227    \rm *
228    \cp ../input/* .
229    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
230    ln -sf ../../../../run_template/* .
231    \rm pickup*
232    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
233    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
234    \cp ../build/mitgcmuv .
235    job_c20_375cpu < /dev/null >&! output.run &
236    
237    
238    
239    
# Line 231  cd run Line 271  cd run
271  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
272  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
273  \rm pickup*  \rm pickup*
274  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
275  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
276  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
277  job_c20_375cpu < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
278    
# Line 263  cd run Line 303  cd run
303  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
304  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
305  \rm pickup*  \rm pickup*
306  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
307  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
308  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
309  job_c19_500cpu < /dev/null >&! output.run &  job_c19_500cpu < /dev/null >&! output.run &
310    
# Line 272  job_c19_500cpu < /dev/null >&! output.ru Line 312  job_c19_500cpu < /dev/null >&! output.ru
312    
313    
314    
315    ##########################################################################
316    ##########################################################################
317    # 510*510*6*50, 216-cpu cube sphere on cosmos
318    
319    cd MITgcm/verification/global_ocean.cs32x15/code
320    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
321    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
322    \cp SIZE.h_216 SIZE.h
323    \cp packages.conf_hr packages.conf
324    
325    module unload latest_intel80
326    module unload mpich-gm-intel80
327    module load latest_intel81
328    module load mpich-gm-intel81
329    
330    cd ../build
331    \rm *
332    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
333    make depend
334    make -j
335    
336    cd ..
337    mkdir run
338    cd run
339    \rm *
340    \cp ../input/* .
341    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
342    ln -sf ../../../../run_template/* .
343    \rm pickup*
344    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
345    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
346    \cp ../build/mitgcmuv .
347    bsub < job_cosmos
348    
349    
350    
351    
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