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revision 1.33 by dimitri, Tue Mar 16 17:20:07 2004 UTC revision 1.37 by dimitri, Tue May 11 04:03:55 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: March 9, 2004.  Date last tested: March 28, 2004.
3  Code and input used for integrating cube5.  Code and input used for integrating cube5.
4    
5    
# Line 24  cvs co -r hrcube5 MITgcm/verification/gl Line 24  cvs co -r hrcube5 MITgcm/verification/gl
24  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
25  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
   
27  cd ../build  cd ../build
28    \rm *
29  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
30  make depend  make depend
 \rm getcon.F  
31  make  make
32    cd ..
33    mkdir run
34    cd run
35    \rm *
36    \cp ../input/* .
37    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
38    ../build/mitgcmuv >& output.txt
39    
40    comparison output is in:
41    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
42    
43    to use matlab to look at the output
44    matlab
45    
46    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
47        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49    end
50    
51    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
52    mask=0*heff; mask(find(heff>.001))=1;
53    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
54    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
55    clf
56    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
57    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
58    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
59    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
60    
61    
62    ##########################################################################
63    ##########################################################################
64    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
65    
66    cd MITgcm/verification/global_ocean.cs32x15/code
67    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68    \cp ../code_alt/code.176t_8x4/* .
69    cd ../build
70    \rm *
71    ../../../tools/genmake2 -mods=../code
72    make depend
73    make
74  cd ..  cd ..
75  mkdir run  mkdir run
76  cd run  cd run
77    \rm *
78  \cp ../input/* .  \cp ../input/* .
79  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 73  cd ../build Line 114  cd ../build
114  \rm *  \rm *
115  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
116  make depend  make depend
 \rm getcon.F  
117  make  make
118    
119  cd ..  cd ..
# Line 87  mpirun -np 2 ../build/mitgcmuv Line 127  mpirun -np 2 ../build/mitgcmuv
127    
128  ##########################################################################  ##########################################################################
129  ##########################################################################  ##########################################################################
130  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
131  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
132  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
133    
# Line 101  cd ../build Line 141  cd ../build
141  \rm *  \rm *
142  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
143  make depend  make depend
 \rm getcon.F  
144  make  make
145    
146  cd ..  cd ..
# Line 115  qsub job_orion Line 154  qsub job_orion
154    
155  ##########################################################################  ##########################################################################
156  ##########################################################################  ##########################################################################
157    # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
158    # starting with pickup file from end of 1992
159    # requires input files in sudirectories run_template and ncep_rgau
160    # presently residing under orion:/tmp1/dmenem/cube
161    
162    cd MITgcm/verification/global_ocean.cs32x15/code
163    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
164    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
165    \cp packages.conf_hr packages.conf
166    
167    cd ../build
168    \rm *
169    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
170    make depend
171    make
172    
173    cd ..
174    mkdir run
175    cd run
176    \rm *
177    \cp ../input/* .
178    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
179    qsub job_altix93_newIO
180    
181    
182    ##########################################################################
183    ##########################################################################
184  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
185  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
186  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
# Line 129  cd ../build Line 195  cd ../build
195  \rm *  \rm *
196  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
197  make depend  make depend
 \rm getcon.F  
198  make  make
199    
200  cd ..  cd ..
# Line 143  qsub job_orion41 Line 208  qsub job_orion41
208    
209  ##########################################################################  ##########################################################################
210  ##########################################################################  ##########################################################################
211    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
212    # requires input files in sudirectories run_template and ncep_rgau
213    # presently residing under orion:/tmp1/dmenem/cube
214    
215    cd MITgcm/verification/global_ocean.cs32x15/code
216    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
217    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
218    \cp SIZE.h_50 SIZE.h
219    \cp packages.conf_hr packages.conf
220    
221    cd ../build
222    \rm *
223    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
224    make depend
225    make
226    
227    cd ..
228    mkdir run
229    cd run
230    \rm *
231    \cp ../input/* .
232    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
233    qsub job_orion
234    
235    
236    ##########################################################################
237    ##########################################################################
238  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 216-cpu cube sphere on altix with efc
239  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
240  # these can be obained from lou:/u/menemenl/cube  # these can be obained from lou:/u/menemenl/cube
# Line 157  cd ../build Line 249  cd ../build
249  \rm *  \rm *
250  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
251  make depend  make depend
 \rm getcon.F  
252  make  make
253    
254  cd ..  cd ..
# Line 174  qsub job_altix Line 265  qsub job_altix
265  # matlab script for generating pChkptFreq  # matlab script for generating pChkptFreq
266    
267  nTimeSteps=26352;  nTimeSteps=26352;
268  for niter0=216:26352:(26352*11)  for niter0=216:26352:(26352*12)
269   pChkptFreq=(niter0+nTimeSteps)*1200;   pChkptFreq=(niter0+nTimeSteps)*1200;
270   day=pChkptFreq/24/60/60;   day=pChkptFreq/24/60/60;
271   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
# Line 192  niter0 = 184680, day = 2931, 10-Jan-2000 Line 283  niter0 = 184680, day = 2931, 10-Jan-2000
283  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
284  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
285  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
286    niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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