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revision 1.27 by dimitri, Fri Feb 13 08:30:42 2004 UTC revision 1.36 by dimitri, Sun Mar 28 09:28:21 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: February 10, 2004.  Date last tested: March 28, 2004.
3  This is the code used for cube3, the third 1992-2002 510x510x6  Code and input used for integrating cube5.
 cube-sphere integration.  
4    
5    
6  ##########################################################################  ##########################################################################
# Line 10  cube-sphere integration. Line 9  cube-sphere integration.
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
11  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
12  cvs co -r hrcube_3 MITgcm_contrib/high_res_cube/README_ice  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice
13  cvs co -r hrcube_3 MITgcm_contrib/high_res_cube/code-mods  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods
14  cvs co -r hrcube_3 MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input
15  cvs co -r hrcube_3 MITgcm_contrib/high_res_cube/input  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results
16  cvs co -r hrcube_3 MITgcm_contrib/high_res_cube/results  cvs co -r hrcube5 MITgcm_code
17  cvs co -r hrcube_3 MITgcm_code  cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15
 cvs co -r hrcube_3 MITgcm/verification/global_ocean.cs32x15  
18    
19    
20  ##########################################################################  ##########################################################################
# Line 25  cvs co -r hrcube_3 MITgcm/verification/g Line 23  cvs co -r hrcube_3 MITgcm/verification/g
23    
24  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
25  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
27    
28  cd ../build  cd ../build
29  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
# Line 36  cd .. Line 34  cd ..
34  mkdir run  mkdir run
35  cd run  cd run
36  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
37  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
38  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
39    
# Line 68  subplot(224), mypcolor(vice(:,:,6)'), co Line 65  subplot(224), mypcolor(vice(:,:,6)'), co
65    
66  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
67  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
69  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
70    
71  cd ../build  cd ../build
# Line 82  mkdir run Line 79  mkdir run
79  cd run  cd run
80  \rm *  \rm *
81  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
82  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
83  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
84    
85    
86  ##########################################################################  ##########################################################################
87  ##########################################################################  ##########################################################################
88  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
89  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
90  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
91    
# Line 116  qsub job_orion Line 112  qsub job_orion
112    
113  ##########################################################################  ##########################################################################
114  ##########################################################################  ##########################################################################
115    # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
116    # starting with pickup file from end of 1992
117    # requires input files in sudirectories run_template and ncep_rgau
118    # presently residing under orion:/tmp1/dmenem/cube
119    
120    cd MITgcm/verification/global_ocean.cs32x15/code
121    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
122    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
123    \cp packages.conf_hr packages.conf
124    
125    cd ../build
126    \rm *
127    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
128    make depend
129    make
130    
131    cd ..
132    mkdir run
133    cd run
134    \rm *
135    \cp ../input/* .
136    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
137    qsub job_altix93_newIO
138    
139    
140    ##########################################################################
141    ##########################################################################
142  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
143  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
144  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
# Line 143  qsub job_orion41 Line 166  qsub job_orion41
166    
167  ##########################################################################  ##########################################################################
168  ##########################################################################  ##########################################################################
169    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
170    # requires input files in sudirectories run_template and ncep_rgau
171    # presently residing under orion:/tmp1/dmenem/cube
172    
173    cd MITgcm/verification/global_ocean.cs32x15/code
174    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
175    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
176    \cp SIZE.h_50 SIZE.h
177    \cp packages.conf_hr packages.conf
178    
179    cd ../build
180    \rm *
181    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
182    make depend
183    make
184    
185    cd ..
186    mkdir run
187    cd run
188    \rm *
189    \cp ../input/* .
190    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
191    qsub job_orion
192    
193    
194    ##########################################################################
195    ##########################################################################
196  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 216-cpu cube sphere on altix with efc
197  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
198  # these can be obained from lou:/u/menemenl/cube  # these can be obained from lou:/u/menemenl/cube
# Line 165  cd run Line 215  cd run
215  \rm *  \rm *
216  \cp ../input/* .  \cp ../input/* .
217  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
218  qsub -l ignore_ded=1 job_altix  qsub job_altix
219    
220    
221  ##########################################################################  ##########################################################################
# Line 173  qsub -l ignore_ded=1 job_altix Line 223  qsub -l ignore_ded=1 job_altix
223  # matlab script for generating pChkptFreq  # matlab script for generating pChkptFreq
224    
225  nTimeSteps=26352;  nTimeSteps=26352;
226  for niter0=216:26352:(26352*11)  for niter0=216:26352:(26352*12)
227   pChkptFreq=(niter0+nTimeSteps)*1200;   pChkptFreq=(niter0+nTimeSteps)*1200;
228   day=pChkptFreq/24/60/60;   day=pChkptFreq/24/60/60;
229   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
# Line 191  niter0 = 184680, day = 2931, 10-Jan-2000 Line 241  niter0 = 184680, day = 2931, 10-Jan-2000
241  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
242  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
243  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
244    niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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