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revision 1.23 by dimitri, Sat Feb 7 23:18:05 2004 UTC revision 1.35 by dimitri, Sun Mar 28 08:49:44 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: January 24, 2004.  Date last tested: March 9, 2004.
3  This is the code used for cube2, the second 1992-2002 510x510x6  Code and input used for integrating cube5.
 cube-sphere integration.  
4    
5    
6  ##########################################################################  ##########################################################################
# Line 10  cube-sphere integration. Line 9  cube-sphere integration.
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
11  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
12  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/README_ice  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice
13  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/code-mods  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods
14  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input
15  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/input  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results
16  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/results  cvs co -r hrcube5 MITgcm_code
17  cvs co -r hrcube_2 MITgcm_code  cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15
 cvs co -r hrcube_2 MITgcm/verification/global_ocean.cs32x15  
18    
19    
20  ##########################################################################  ##########################################################################
# Line 25  cvs co -r hrcube_2 MITgcm/verification/g Line 23  cvs co -r hrcube_2 MITgcm/verification/g
23    
24  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
25  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
27    
28  cd ..  cd ../build
 mkdir build  
 cd build  
29  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
30  make depend  make depend
31  make  make
# Line 38  cd .. Line 34  cd ..
34  mkdir run  mkdir run
35  cd run  cd run
36  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
37  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
38  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
39    
# Line 70  subplot(224), mypcolor(vice(:,:,6)'), co Line 65  subplot(224), mypcolor(vice(:,:,6)'), co
65    
66  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
67  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
69  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
70    
71  cd ..  cd ../build
 mkdir build  
 cd build  
72  \rm *  \rm *
73  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
74  make depend  make depend
# Line 86  mkdir run Line 79  mkdir run
79  cd run  cd run
80  \rm *  \rm *
81  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
82  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
83  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
84    
85    
86  ##########################################################################  ##########################################################################
87  ##########################################################################  ##########################################################################
88  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
89  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
90  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
91    
# Line 103  cd MITgcm/verification/global_ocean.cs32 Line 95  cd MITgcm/verification/global_ocean.cs32
95  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_54 SIZE.h
96  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
97    
98    cd ../build
99    \rm *
100    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
101    make depend
102    make
103    
104  cd ..  cd ..
105  mkdir build  mkdir run
106  cd build  cd run
107    \rm *
108    \cp ../input/* .
109    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
110    qsub job_orion
111    
112    
113    ##########################################################################
114    ##########################################################################
115    # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
116    # requires input files in sudirectories run_template and ncep_rgau
117    # presently residing under orion:/tmp1/dmenem/cube
118    
119    cd MITgcm/verification/global_ocean.cs32x15/code
120    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
121    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
122    \cp packages.conf_hr packages.conf
123    
124    cd ../build
125  \rm *  \rm *
126  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
127  make depend  make depend
# Line 132  cd MITgcm/verification/global_ocean.cs32 Line 148  cd MITgcm/verification/global_ocean.cs32
148  \cp SIZE.h_41 SIZE.h  \cp SIZE.h_41 SIZE.h
149  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
150    
151    cd ../build
152    \rm *
153    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
154    make depend
155    make
156    
157  cd ..  cd ..
158  mkdir build  mkdir run
159  cd build  cd run
160    \rm *
161    \cp ../input/* .
162    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
163    qsub job_orion41
164    
165    
166    ##########################################################################
167    ##########################################################################
168    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
169    # requires input files in sudirectories run_template and ncep_rgau
170    # presently residing under orion:/tmp1/dmenem/cube
171    
172    cd MITgcm/verification/global_ocean.cs32x15/code
173    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
174    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
175    \cp SIZE.h_50 SIZE.h
176    \cp packages.conf_hr packages.conf
177    
178    cd ../build
179  \rm *  \rm *
180  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
181  make depend  make depend
# Line 161  cd MITgcm/verification/global_ocean.cs32 Line 202  cd MITgcm/verification/global_ocean.cs32
202  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
203  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
204    
205  cd ..  cd ../build
 mkdir build  
 cd build  
206  \rm *  \rm *
207  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
208  make depend  make depend
# Line 183  qsub job_altix Line 222  qsub job_altix
222  # matlab script for generating pChkptFreq  # matlab script for generating pChkptFreq
223    
224  nTimeSteps=26352;  nTimeSteps=26352;
225  for niter0=216:26352:(26352*11)  for niter0=216:26352:(26352*12)
226   pChkptFreq=(niter0+nTimeSteps)*1200;   pChkptFreq=(niter0+nTimeSteps)*1200;
227   day=pChkptFreq/24/60/60;   day=pChkptFreq/24/60/60;
228   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
# Line 201  niter0 = 184680, day = 2931, 10-Jan-2000 Line 240  niter0 = 184680, day = 2931, 10-Jan-2000
240  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
241  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
242  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
243    niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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