| 1 |
Instructions for setting up a cube-sphere integration with sea-ice. |
Instructions for setting up a cube-sphere integration with sea-ice. |
| 2 |
Date last tested: January 9, 2004. |
Date last tested: March 9, 2004. |
| 3 |
This is the code used for first multi-year 510x510x6 |
Code and input used for integrating cube5. |
|
cube-sphere integration. |
|
| 4 |
|
|
| 5 |
|
|
| 6 |
########################################################################## |
########################################################################## |
| 9 |
|
|
| 10 |
setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack |
setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack |
| 11 |
cvs login ( CVS password: cvsanon ) |
cvs login ( CVS password: cvsanon ) |
| 12 |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/README_ice |
cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice |
| 13 |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/code-mods |
cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods |
| 14 |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/matlab-grid-converter |
cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input |
| 15 |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/input |
cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results |
| 16 |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/results |
cvs co -r hrcube5 MITgcm_code |
| 17 |
cvs co -r hrcube_1 MITgcm_code |
cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15 |
|
cvs co -r hrcube_1 MITgcm/verification/global_ocean.cs32x15 |
|
| 18 |
|
|
| 19 |
|
|
| 20 |
########################################################################## |
########################################################################## |
| 23 |
|
|
| 24 |
cd MITgcm/verification/global_ocean.cs32x15/code |
cd MITgcm/verification/global_ocean.cs32x15/code |
| 25 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 26 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* . |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
| 27 |
|
|
| 28 |
cd .. |
cd ../build |
|
mkdir build |
|
|
cd build |
|
| 29 |
../../../tools/genmake2 -mods=../code |
../../../tools/genmake2 -mods=../code |
| 30 |
make depend |
make depend |
| 31 |
|
\rm getcon.F |
| 32 |
make |
make |
| 33 |
|
|
| 34 |
cd .. |
cd .. |
| 35 |
mkdir run |
mkdir run |
| 36 |
cd run |
cd run |
| 37 |
\cp ../input/* . |
\cp ../input/* . |
|
\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* . |
|
| 38 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 39 |
../build/mitgcmuv >& output.txt |
../build/mitgcmuv >& output.txt |
| 40 |
|
|
| 66 |
|
|
| 67 |
cd MITgcm/verification/global_ocean.cs32x15/code |
cd MITgcm/verification/global_ocean.cs32x15/code |
| 68 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 69 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* . |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
| 70 |
\cp SIZE.h_mpi SIZE.h |
\cp SIZE.h_mpi SIZE.h |
|
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
|
| 71 |
|
|
| 72 |
cd .. |
cd ../build |
|
mkdir build |
|
|
cd build |
|
| 73 |
\rm * |
\rm * |
| 74 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi |
| 75 |
make depend |
make depend |
| 76 |
|
\rm getcon.F |
| 77 |
make |
make |
| 78 |
|
|
| 79 |
cd .. |
cd .. |
| 81 |
cd run |
cd run |
| 82 |
\rm * |
\rm * |
| 83 |
\cp ../input/* . |
\cp ../input/* . |
|
\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* . |
|
| 84 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 85 |
mpirun -np 2 ../build/mitgcmuv |
mpirun -np 2 ../build/mitgcmuv |
| 86 |
|
|
| 95 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 96 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
| 97 |
\cp SIZE.h_54 SIZE.h |
\cp SIZE.h_54 SIZE.h |
|
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
|
| 98 |
\cp packages.conf_hr packages.conf |
\cp packages.conf_hr packages.conf |
|
\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F |
|
| 99 |
|
|
| 100 |
cd .. |
cd ../build |
|
mkdir build |
|
|
cd build |
|
| 101 |
\rm * |
\rm * |
| 102 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi |
| 103 |
make depend |
make depend |
| 104 |
|
\rm getcon.F |
| 105 |
make |
make |
| 106 |
|
|
| 107 |
cd .. |
cd .. |
| 110 |
\rm * |
\rm * |
| 111 |
\cp ../input/* . |
\cp ../input/* . |
| 112 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
|
\cm data.exf_clim_hr data.exf_clim |
|
| 113 |
qsub job_orion |
qsub job_orion |
| 114 |
|
|
| 115 |
|
|
| 116 |
########################################################################## |
########################################################################## |
| 117 |
########################################################################## |
########################################################################## |
| 118 |
|
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc |
| 119 |
|
# requires input files in sudirectories run_template and ncep_rgau |
| 120 |
|
# presently residing under orion:/tmp1/dmenem/cube |
| 121 |
|
|
| 122 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
| 123 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 124 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* . |
| 125 |
|
\cp SIZE.h_41 SIZE.h |
| 126 |
|
\cp packages.conf_hr packages.conf |
| 127 |
|
|
| 128 |
|
cd ../build |
| 129 |
|
\rm * |
| 130 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi |
| 131 |
|
make depend |
| 132 |
|
\rm getcon.F |
| 133 |
|
make |
| 134 |
|
|
| 135 |
|
cd .. |
| 136 |
|
mkdir run |
| 137 |
|
cd run |
| 138 |
|
\rm * |
| 139 |
|
\cp ../input/* . |
| 140 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 141 |
|
qsub job_orion41 |
| 142 |
|
|
| 143 |
|
|
| 144 |
|
########################################################################## |
| 145 |
|
########################################################################## |
| 146 |
# 510*510*6*50, 216-cpu cube sphere on altix with efc |
# 510*510*6*50, 216-cpu cube sphere on altix with efc |
| 147 |
# requires input files in sudirectories run_template and ncep_rgau |
# requires input files in sudirectories run_template and ncep_rgau |
| 148 |
# these can be obained from lou:/u/menemenl/cube |
# these can be obained from lou:/u/menemenl/cube |
| 151 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 152 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
| 153 |
\cp SIZE.h_216 SIZE.h |
\cp SIZE.h_216 SIZE.h |
|
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
|
| 154 |
\cp packages.conf_hr packages.conf |
\cp packages.conf_hr packages.conf |
|
\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F |
|
| 155 |
|
|
| 156 |
cd .. |
cd ../build |
|
mkdir build |
|
|
cd build |
|
| 157 |
\rm * |
\rm * |
| 158 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 159 |
make depend |
make depend |
| 160 |
|
\rm getcon.F |
| 161 |
make |
make |
| 162 |
|
|
| 163 |
cd .. |
cd .. |
| 166 |
\rm * |
\rm * |
| 167 |
\cp ../input/* . |
\cp ../input/* . |
| 168 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
|
\cm data.exf_clim_hr data.exf_clim |
|
| 169 |
qsub job_altix |
qsub job_altix |
| 170 |
|
|
| 171 |
|
|