1 |
Instructions for setting up a cube-sphere integration with sea-ice. |
2 |
|
3 |
September 28, 2006: 216-CPU code for cube38 |
4 |
|
5 |
September 4, 2006 |
6 |
Modified 32*32*6*15 experiments to use grid_cs32.* files from |
7 |
verification/tutorial_held_suarez_cs/input instead of |
8 |
tile* files from verification/global_ocean.cs32x15/input |
9 |
|
10 |
August 8, 2006 |
11 |
216-CPU code and input used for integrating cube37 |
12 |
using "June 10, 2006" MITgcm code. |
13 |
|
14 |
for online T/S profile diagnostics all that is needed is |
15 |
profiles_init_fixed |
16 |
profiles_inloop |
17 |
see pkg/ecco/ecco_cost_init_fixed.F |
18 |
pkg/ecco/cost_averagesfields.F |
19 |
|
20 |
|
21 |
########################################################################## |
22 |
########################################################################## |
23 |
# getting the code from anonymous CVS server |
24 |
# |
25 |
|
26 |
bash or sh shell: |
27 |
$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
28 |
$ cvs login |
29 |
( enter the CVS password: "cvsanon" ) |
30 |
|
31 |
tcsh or csh shell: |
32 |
$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
33 |
$ cvs login |
34 |
( enter the CVS password: "cvsanon" ) |
35 |
|
36 |
cvs co MITgcm_contrib/high_res_cube/README_ice |
37 |
cvs co MITgcm_contrib/high_res_cube/code-mods |
38 |
cvs co MITgcm_contrib/high_res_cube/input |
39 |
cvs co MITgcm_contrib/high_res_cube/results |
40 |
cvs co MITgcm_code |
41 |
cvs co MITgcm/verification/global_ocean.cs32x15 |
42 |
cvs co MITgcm/verification/tutorial_held_suarez_cs/input |
43 |
|
44 |
|
45 |
########################################################################## |
46 |
########################################################################## |
47 |
# 32*32*6*15, 1-cpu cube sphere |
48 |
|
49 |
cd MITgcm/verification/global_ocean.cs32x15/code |
50 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
51 |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
52 |
cd ../build |
53 |
\rm * |
54 |
../../../tools/genmake2 -mods=../code |
55 |
make depend |
56 |
make |
57 |
cd .. |
58 |
mkdir run |
59 |
cd run |
60 |
\rm * |
61 |
\cp ../../tutorial_held_suarez_cs/input/grid* . |
62 |
\cp ../input/* . |
63 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
64 |
../build/mitgcmuv >& output.txt |
65 |
|
66 |
comparison output is in: |
67 |
../../../../MITgcm_contrib/high_res_cube/results/output.txt |
68 |
|
69 |
to use matlab to look at the output |
70 |
matlab |
71 |
|
72 |
for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ... |
73 |
'QNETtave','FVtave','FUtave','EmPmRtave'} |
74 |
tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]); |
75 |
cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
76 |
end |
77 |
|
78 |
heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]); |
79 |
mask=0*heff; mask(find(heff>.001))=1; |
80 |
uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
81 |
vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
82 |
clf |
83 |
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3') |
84 |
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6') |
85 |
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3') |
86 |
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6') |
87 |
|
88 |
|
89 |
########################################################################## |
90 |
########################################################################## |
91 |
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics |
92 |
# requires input files in sudirectories run_template and ncep_rgau |
93 |
# these can be obained from lou:/u/menemenl/cube |
94 |
|
95 |
cd MITgcm/verification/global_ocean.cs32x15/code |
96 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
97 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
98 |
\cp SIZE.h_216 SIZE.h |
99 |
\cp packages.conf_hr packages.conf |
100 |
|
101 |
cd ../build |
102 |
\rm * |
103 |
../../../tools/genmake2 -mods=../code -of |
104 |
../../../tools/build_options/linux_ia\ |
105 |
64_ifort+mpi_altix_nas |
106 |
make depend |
107 |
make -j |
108 |
|
109 |
cd .. |
110 |
mkdir run |
111 |
cd run |
112 |
\rm * |
113 |
\cp ../input/* . |
114 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
115 |
ln -sf ../../../../run_template/* . |
116 |
\rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin |
117 |
\rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t |
118 |
ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216 |
119 |
ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 |
120 |
pickup_seaice.\ |
121 |
0000000216 |
122 |
\cp ../build/mitgcmuv . |
123 |
qsub job_altix |
124 |
|
125 |
|
126 |
########################################################################## |
127 |
########################################################################## |
128 |
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment |
129 |
|
130 |
cd MITgcm/verification/global_ocean.cs32x15/code |
131 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
132 |
\cp ../code_alt/code.176t_8x4/* . |
133 |
cd ../build |
134 |
\rm * |
135 |
../../../tools/genmake2 -mods=../code |
136 |
make depend |
137 |
make |
138 |
cd .. |
139 |
mkdir run |
140 |
cd run |
141 |
\rm * |
142 |
\cp ../../tutorial_held_suarez_cs/input/grid* . |
143 |
\cp ../input/* . |
144 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
145 |
../build/mitgcmuv >& output.txt |
146 |
|
147 |
|
148 |
########################################################################## |
149 |
########################################################################## |
150 |
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort |
151 |
|
152 |
cd MITgcm/verification/global_ocean.cs32x15/code |
153 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
154 |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
155 |
\cp SIZE.h_mpi SIZE.h |
156 |
|
157 |
cd ../build |
158 |
\rm * |
159 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
160 |
make depend |
161 |
make -j |
162 |
|
163 |
cd .. |
164 |
mkdir run |
165 |
cd run |
166 |
\rm * |
167 |
\cp ../../tutorial_held_suarez_cs/input/grid* . |
168 |
\cp ../input/* . |
169 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
170 |
mpirun -np 2 ../build/mitgcmuv |
171 |
|
172 |
|
173 |
########################################################################## |
174 |
########################################################################## |
175 |
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc |
176 |
# starting with pickup file from end of 1992 |
177 |
# requires input files in sudirectories run_template and ncep_rgau |
178 |
|
179 |
cd MITgcm/verification/global_ocean.cs32x15/code |
180 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
181 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* . |
182 |
\cp packages.conf_hr packages.conf |
183 |
|
184 |
cd ../build |
185 |
\rm * |
186 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
187 |
make depend |
188 |
make -j |
189 |
|
190 |
cd .. |
191 |
mkdir run |
192 |
cd run |
193 |
\rm * |
194 |
\cp ../input/* . |
195 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
196 |
qsub job_altix92_54t |
197 |
|
198 |
|
199 |
########################################################################## |
200 |
########################################################################## |
201 |
# 510*510*6*50, 1500-tile, 150-cpu, excludes land |
202 |
# uses s1500t_17x51 configuration |
203 |
|
204 |
cd MITgcm/verification/global_ocean.cs32x15/code |
205 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
206 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
207 |
\cp SIZE.h_150 SIZE.h |
208 |
\cp packages.conf_hr packages.conf |
209 |
|
210 |
cd ../build |
211 |
\rm * |
212 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
213 |
make depend |
214 |
make -j |
215 |
|
216 |
cd .. |
217 |
mkdir run |
218 |
cd run |
219 |
\rm * |
220 |
\cp ../input/* . |
221 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
222 |
ln -sf ../../../../run_template/* . |
223 |
\rm pickup* |
224 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
225 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
226 |
\cp ../build/mitgcmuv mitgcmuv150 |
227 |
qsub job_altix150 |
228 |
|
229 |
|
230 |
########################################################################## |
231 |
########################################################################## |
232 |
# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
233 |
# uses s1500t_17x51 configuration |
234 |
# example for running on c17-c20 using arrayd |
235 |
|
236 |
cd MITgcm/verification/global_ocean.cs32x15/code |
237 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
238 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
239 |
\cp SIZE.h_375 SIZE.h |
240 |
\cp packages.conf_hr packages.conf |
241 |
|
242 |
cd ../build |
243 |
\rm * |
244 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
245 |
make depend |
246 |
make -j |
247 |
|
248 |
cd .. |
249 |
mkdir run |
250 |
cd run |
251 |
\rm * |
252 |
\cp ../input/* . |
253 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
254 |
ln -sf ../../../../run_template/* . |
255 |
\rm pickup* |
256 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
257 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
258 |
\cp ../build/mitgcmuv . |
259 |
job_c20_375cpu < /dev/null >&! output.run & |
260 |
|
261 |
|
262 |
########################################################################## |
263 |
########################################################################## |
264 |
# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
265 |
# uses s1500t_17x51 configuration |
266 |
# example for running on c17-c20 using arrayd |
267 |
|
268 |
cd MITgcm/verification/global_ocean.cs32x15/code |
269 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
270 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
271 |
\cp SIZE.h_375 SIZE.h |
272 |
\cp packages.conf_hr packages.conf |
273 |
|
274 |
cd ../build |
275 |
\rm * |
276 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
277 |
make depend |
278 |
make -j |
279 |
|
280 |
cd .. |
281 |
mkdir run |
282 |
cd run |
283 |
\rm * |
284 |
\cp ../input/* . |
285 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
286 |
ln -sf ../../../../run_template/* . |
287 |
\rm pickup* |
288 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
289 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
290 |
\cp ../build/mitgcmuv . |
291 |
job_c20_375cpu < /dev/null >&! output.run & |
292 |
|
293 |
|
294 |
########################################################################## |
295 |
########################################################################## |
296 |
# 510*510*6*50, 1500-tile, 500-cpu, excludes land |
297 |
# uses s1500t_17x51 configuration |
298 |
# example for running on c17-c20 using arrayd |
299 |
|
300 |
cd MITgcm/verification/global_ocean.cs32x15/code |
301 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
302 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
303 |
\cp SIZE.h_500 SIZE.h |
304 |
\cp packages.conf_hr packages.conf |
305 |
|
306 |
cd ../build |
307 |
\rm * |
308 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
309 |
make depend |
310 |
make -j |
311 |
|
312 |
cd .. |
313 |
mkdir run |
314 |
cd run |
315 |
\rm * |
316 |
\cp ../input/* . |
317 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
318 |
ln -sf ../../../../run_template/* . |
319 |
\rm pickup* |
320 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
321 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
322 |
\cp ../build/mitgcmuv . |
323 |
job_c19_500cpu < /dev/null >&! output.run & |
324 |
|
325 |
|
326 |
########################################################################## |
327 |
########################################################################## |
328 |
# 510*510*6*50, 216-cpu cube sphere on cosmos |
329 |
|
330 |
cd MITgcm/verification/global_ocean.cs32x15/code |
331 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
332 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
333 |
\cp SIZE.h_216 SIZE.h |
334 |
\cp packages.conf_hr packages.conf |
335 |
|
336 |
module unload latest_intel80 |
337 |
module unload mpich-gm-intel80 |
338 |
module load latest_intel81 |
339 |
module load mpich-gm-intel81 |
340 |
|
341 |
cd ../build |
342 |
\rm * |
343 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos |
344 |
make depend |
345 |
make -j |
346 |
|
347 |
cd .. |
348 |
mkdir run |
349 |
cd run |
350 |
\rm * |
351 |
\cp ../input/* . |
352 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
353 |
ln -sf ../../../../run_template/* . |
354 |
\rm pickup* |
355 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
356 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
357 |
\cp ../build/mitgcmuv . |
358 |
bsub < job_cosmos |
359 |
|
360 |
|
361 |
########################################################################## |
362 |
########################################################################## |
363 |
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc |
364 |
# requires input files in sudirectories run_template and ncep_rgau |
365 |
# presently residing under orion:/tmp1/dmenem/cube |
366 |
|
367 |
cd MITgcm/verification/global_ocean.cs32x15/code |
368 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
369 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
370 |
\cp SIZE.h_54 SIZE.h |
371 |
\cp packages.conf_hr packages.conf |
372 |
|
373 |
cd ../build |
374 |
\rm * |
375 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
376 |
make depend |
377 |
make -j |
378 |
|
379 |
cd .. |
380 |
mkdir run |
381 |
cd run |
382 |
\rm * |
383 |
\cp ../input/* . |
384 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
385 |
qsub job_orion |
386 |
|
387 |
|
388 |
########################################################################## |
389 |
########################################################################## |
390 |
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc |
391 |
# requires input files in sudirectories run_template and ncep_rgau |
392 |
# presently residing under orion:/tmp1/dmenem/cube |
393 |
|
394 |
cd MITgcm/verification/global_ocean.cs32x15/code |
395 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
396 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* . |
397 |
\cp SIZE.h_41 SIZE.h |
398 |
\cp packages.conf_hr packages.conf |
399 |
|
400 |
cd ../build |
401 |
\rm * |
402 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
403 |
make depend |
404 |
make -j |
405 |
|
406 |
cd .. |
407 |
mkdir run |
408 |
cd run |
409 |
\rm * |
410 |
\cp ../input/* . |
411 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
412 |
qsub job_orion41 |
413 |
|
414 |
|
415 |
########################################################################## |
416 |
########################################################################## |
417 |
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc |
418 |
# requires input files in sudirectories run_template and ncep_rgau |
419 |
# presently residing under orion:/tmp1/dmenem/cube |
420 |
|
421 |
cd MITgcm/verification/global_ocean.cs32x15/code |
422 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
423 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
424 |
\cp SIZE.h_50 SIZE.h |
425 |
\cp packages.conf_hr packages.conf |
426 |
|
427 |
cd ../build |
428 |
\rm * |
429 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
430 |
make depend |
431 |
make -j |
432 |
|
433 |
cd .. |
434 |
mkdir run |
435 |
cd run |
436 |
\rm * |
437 |
\cp ../input/* . |
438 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
439 |
qsub job_orion |