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Revision 1.20 - (hide annotations) (download)
Sun Jan 25 06:33:20 2004 UTC (20 years, 4 months ago) by dimitri
Branch: MAIN
CVS Tags: hrcube_2
Changes since 1.19: +9 -11 lines 
Code used for cube2, the 2nd 1992-2002 510x510x6 cube-sphere integration.
1 dimitri 1.1 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.20 Date last tested: January 24, 2004.
3     This is the code used for cube2 the second 1992-2002 510x510x6
4 dimitri 1.14 cube-sphere integration.
5 dimitri 1.8
6    
7     ##########################################################################
8     ##########################################################################
9 dimitri 1.14 # getting the code from anonymous CVS server
10 dimitri 1.1
11     setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
12     cvs login ( CVS password: cvsanon )
13 dimitri 1.20 cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/README_ice
14     cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/code-mods
15     cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/matlab-grid-converter
16     cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/input
17     cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/results
18     cvs co -r hrcube_2 MITgcm_code
19     cvs co -r hrcube_2 MITgcm/verification/global_ocean.cs32x15
20 dimitri 1.14
21    
22     ##########################################################################
23     ##########################################################################
24     # 32*32*6*15, 1-cpu cube sphere
25 dimitri 1.3
26 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
27 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
28     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
29 dimitri 1.3
30 dimitri 1.2 cd ..
31     mkdir build
32     cd build
33 dimitri 1.10 ../../../tools/genmake2 -mods=../code
34 dimitri 1.1 make depend
35     make
36 dimitri 1.3
37 dimitri 1.1 cd ..
38     mkdir run
39     cd run
40 dimitri 1.8 \cp ../input/* .
41     \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
42     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
43 dimitri 1.3 ../build/mitgcmuv >& output.txt
44    
45     comparison output is in:
46     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
47    
48     to use matlab to look at the output
49     matlab
50 dimitri 1.17
51 dimitri 1.5 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
52 dimitri 1.13 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
53 dimitri 1.4 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
54     end
55 dimitri 1.8
56 dimitri 1.17 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
57     mask=0*heff; mask(find(heff>.001))=1;
58     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
59     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
60     clf
61     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
62     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
63     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
64     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
65    
66 dimitri 1.8
67     ##########################################################################
68     ##########################################################################
69     # 32*32*6*15, 2-cpu cube sphere on the altices with efc
70    
71     cd MITgcm/verification/global_ocean.cs32x15/code
72     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
73     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
74     \cp SIZE.h_mpi SIZE.h
75     \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
76    
77     cd ..
78     mkdir build
79     cd build
80 dimitri 1.14 \rm *
81 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
82 dimitri 1.8 make depend
83     make
84    
85     cd ..
86     mkdir run
87     cd run
88 dimitri 1.14 \rm *
89 dimitri 1.8 \cp ../input/* .
90     \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
91     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
92     mpirun -np 2 ../build/mitgcmuv
93    
94    
95     ##########################################################################
96     ##########################################################################
97 dimitri 1.9 # 510*510*6*50, 54-cpu cube sphere on the altices with efc
98 dimitri 1.14 # requires input files in sudirectories run_template and ncep_rgau
99     # presently residing under orion:/tmp1/dmenem/cube
100 dimitri 1.8
101     cd MITgcm/verification/global_ocean.cs32x15/code
102     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
103     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
104     \cp SIZE.h_54 SIZE.h
105     \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
106 dimitri 1.11 \cp packages.conf_hr packages.conf
107 dimitri 1.13 \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
108 dimitri 1.8
109     cd ..
110     mkdir build
111     cd build
112 dimitri 1.14 \rm *
113 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
114 dimitri 1.8 make depend
115     make
116    
117     cd ..
118     mkdir run
119     cd run
120 dimitri 1.14 \rm *
121 dimitri 1.8 \cp ../input/* .
122     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
123 dimitri 1.9 qsub job_orion
124    
125    
126     ##########################################################################
127     ##########################################################################
128 dimitri 1.13 # 510*510*6*50, 216-cpu cube sphere on altix with efc
129 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
130     # these can be obained from lou:/u/menemenl/cube
131 dimitri 1.9
132     cd MITgcm/verification/global_ocean.cs32x15/code
133     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
134     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
135     \cp SIZE.h_216 SIZE.h
136     \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
137 dimitri 1.12 \cp packages.conf_hr packages.conf
138 dimitri 1.13 \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
139 dimitri 1.9
140     cd ..
141     mkdir build
142     cd build
143 dimitri 1.15 \rm *
144 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
145 dimitri 1.9 make depend
146     make
147    
148     cd ..
149     mkdir run
150     cd run
151 dimitri 1.15 \rm *
152     \cp ../input/* .
153     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
154 dimitri 1.12 qsub job_altix
155 dimitri 1.17
156    
157     ##########################################################################
158     ##########################################################################
159     # matlab script for generating pChkptFreq
160    
161     nTimeSteps=26352;
162     for niter0=216:26352:(26352*11)
163     pChkptFreq=(niter0+nTimeSteps)*1200;
164     day=pChkptFreq/24/60/60;
165     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
166     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
167     end
168    
169     niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
170     niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
171     niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
172     niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
173     niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
174     niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
175     niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
176     niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
177     niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
178     niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
179     niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
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