1 |
Instructions for setting up a cube-sphere integration with sea-ice. |
Instructions for setting up a cube-sphere integration with sea-ice. |
2 |
Date last tested: November 21, 2003. |
Date last tested: January 9, 2004. |
3 |
|
This is the code used for first multi-year 510x510x6 |
4 |
|
cube-sphere integration. |
5 |
|
|
6 |
|
|
7 |
|
########################################################################## |
8 |
|
########################################################################## |
9 |
|
# getting the code from anonymous CVS server |
10 |
|
|
11 |
setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack |
setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack |
12 |
cvs login ( CVS password: cvsanon ) |
cvs login ( CVS password: cvsanon ) |
13 |
cvs co MITgcm_contrib/high_res_cube/code-mods |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/README_ice |
14 |
cvs co MITgcm_contrib/high_res_cube/matlab-grid-converter |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/code-mods |
15 |
cvs co MITgcm_contrib/high_res_cube/README_ice |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/matlab-grid-converter |
16 |
cvs co -r checkpoint52a_post MITgcm_code |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/input |
17 |
cvs co MITgcm/verification/global_ocean.cs32x15 |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/results |
18 |
|
cvs co -r hrcube_1 MITgcm_code |
19 |
|
cvs co -r hrcube_1 MITgcm/verification/global_ocean.cs32x15 |
20 |
|
|
21 |
|
|
22 |
|
########################################################################## |
23 |
|
########################################################################## |
24 |
|
# 32*32*6*15, 1-cpu cube sphere |
25 |
|
|
26 |
cd MITgcm/verification/global_ocean.cs32x15/code |
cd MITgcm/verification/global_ocean.cs32x15/code |
27 |
cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
28 |
cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* . |
29 |
\rm mdsio_readfield.F |
|
30 |
cd .. |
cd .. |
31 |
mkdir build |
mkdir build |
32 |
cd build |
cd build |
33 |
../code/genmake2 -mods=../code |
../../../tools/genmake2 -mods=../code |
34 |
make depend |
make depend |
35 |
make |
make |
36 |
|
|
37 |
cd .. |
cd .. |
38 |
mkdir run |
mkdir run |
39 |
cd run |
cd run |
40 |
cp ../input/* . |
\cp ../input/* . |
41 |
cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* . |
\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* . |
42 |
cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
43 |
../build/mitgcmuv >& output |
../build/mitgcmuv >& output.txt |
44 |
|
|
45 |
|
comparison output is in: |
46 |
|
../../../../MITgcm_contrib/high_res_cube/results/output.txt |
47 |
|
|
48 |
|
to use matlab to look at the output |
49 |
|
matlab |
50 |
|
|
51 |
|
for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'} |
52 |
|
tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]); |
53 |
|
cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
54 |
|
end |
55 |
|
|
56 |
|
heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]); |
57 |
|
mask=0*heff; mask(find(heff>.001))=1; |
58 |
|
uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]); |
59 |
|
vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]); |
60 |
|
clf |
61 |
|
subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3') |
62 |
|
subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6') |
63 |
|
subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3') |
64 |
|
subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6') |
65 |
|
|
66 |
|
|
67 |
|
########################################################################## |
68 |
|
########################################################################## |
69 |
|
# 32*32*6*15, 2-cpu cube sphere on the altices with efc |
70 |
|
|
71 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
72 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
73 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* . |
74 |
|
\cp SIZE.h_mpi SIZE.h |
75 |
|
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
76 |
|
|
77 |
|
cd .. |
78 |
|
mkdir build |
79 |
|
cd build |
80 |
|
\rm * |
81 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi |
82 |
|
make depend |
83 |
|
make |
84 |
|
|
85 |
|
cd .. |
86 |
|
mkdir run |
87 |
|
cd run |
88 |
|
\rm * |
89 |
|
\cp ../input/* . |
90 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* . |
91 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
92 |
|
mpirun -np 2 ../build/mitgcmuv |
93 |
|
|
94 |
|
|
95 |
|
########################################################################## |
96 |
|
########################################################################## |
97 |
|
# 510*510*6*50, 54-cpu cube sphere on the altices with efc |
98 |
|
# requires input files in sudirectories run_template and ncep_rgau |
99 |
|
# presently residing under orion:/tmp1/dmenem/cube |
100 |
|
|
101 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
102 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
103 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
104 |
|
\cp SIZE.h_54 SIZE.h |
105 |
|
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
106 |
|
\cp packages.conf_hr packages.conf |
107 |
|
\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F |
108 |
|
|
109 |
|
cd .. |
110 |
|
mkdir build |
111 |
|
cd build |
112 |
|
\rm * |
113 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi |
114 |
|
make depend |
115 |
|
make |
116 |
|
|
117 |
|
cd .. |
118 |
|
mkdir run |
119 |
|
cd run |
120 |
|
\rm * |
121 |
|
\cp ../input/* . |
122 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
123 |
|
qsub job_orion |
124 |
|
|
125 |
|
|
126 |
|
########################################################################## |
127 |
|
########################################################################## |
128 |
|
# 510*510*6*50, 216-cpu cube sphere on altix with efc |
129 |
|
# requires input files in sudirectories run_template and ncep_rgau |
130 |
|
# these can be obained from lou:/u/menemenl/cube |
131 |
|
|
132 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
133 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
134 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
135 |
|
\cp SIZE.h_216 SIZE.h |
136 |
|
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
137 |
|
\cp packages.conf_hr packages.conf |
138 |
|
\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F |
139 |
|
|
140 |
|
cd .. |
141 |
|
mkdir build |
142 |
|
cd build |
143 |
|
\rm * |
144 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
145 |
|
make depend |
146 |
|
make |
147 |
|
|
148 |
|
cd .. |
149 |
|
mkdir run |
150 |
|
cd run |
151 |
|
\rm * |
152 |
|
\cp ../input/* . |
153 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
154 |
|
qsub job_altix |
155 |
|
|
156 |
|
|
157 |
|
########################################################################## |
158 |
|
########################################################################## |
159 |
|
# matlab script for generating pChkptFreq |
160 |
|
|
161 |
|
nTimeSteps=26352; |
162 |
|
for niter0=216:26352:(26352*11) |
163 |
|
pChkptFreq=(niter0+nTimeSteps)*1200; |
164 |
|
day=pChkptFreq/24/60/60; |
165 |
|
disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ... |
166 |
|
datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)]) |
167 |
|
end |
168 |
|
|
169 |
|
niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600 |
170 |
|
niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000 |
171 |
|
niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400 |
172 |
|
niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800 |
173 |
|
niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200 |
174 |
|
niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600 |
175 |
|
niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000 |
176 |
|
niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400 |
177 |
|
niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800 |
178 |
|
niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200 |
179 |
|
niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600 |