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Contents of /MITgcm_contrib/high_res_cube/README_ice

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Revision 1.62 - (show annotations) (download)
Sat Feb 25 16:59:00 2006 UTC (18 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.61: +11 -2 lines 
updated instructions for cube29
1 Instructions for setting up a cube-sphere integration with sea-ice.
2 Date last updated: February 25, 2005
3 216-CPU code and input used for integrating cube29.
4
5
6 ##########################################################################
7 ##########################################################################
8 # getting the code from anonymous CVS server
9
10 cvs co MITgcm_contrib/high_res_cube/README_ice
11 cvs co MITgcm_contrib/high_res_cube/code-mods
12 cvs co MITgcm_contrib/high_res_cube/input
13 cvs co MITgcm_contrib/high_res_cube/results
14 cvs co MITgcm_code
15 cvs co MITgcm/verification/global_ocean.cs32x15
16
17 # remove check in config_check.F
18 > C-TRM IF ( highOrderVorticity .AND. useCubedSphereExchange ) THEN
19 > C-TRM WRITE(msgBuf,'(2A)')
20 > C-TRM & 'CONFIG_CHECK: highOrderVorticity Scheme does not work',
21 > C-TRM & ' on CubedSphere grid'
22 > C-TRM CALL PRINT_ERROR( msgBuf , myThid)
23 > C-TRM STOP 'ABNORMAL END: S/R CONFIG_CHECK'
24 > C-TRM ENDIF
25
26
27 ##########################################################################
28 ##########################################################################
29 # 32*32*6*15, 1-cpu cube sphere
30
31 cd MITgcm/verification/global_ocean.cs32x15/code
32 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
34 cd ../build
35 \rm *
36 ../../../tools/genmake2 -mods=../code
37 make depend
38 make
39 cd ..
40 mkdir run
41 cd run
42 \rm *
43 \cp ../input/* .
44 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
45 ../build/mitgcmuv >& output.txt
46
47 comparison output is in:
48 ../../../../MITgcm_contrib/high_res_cube/results/output.txt
49
50 to use matlab to look at the output
51 matlab
52
53 for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
54 'QNETtave','FVtave','FUtave','EmPmRtave'}
55 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
56 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
57 end
58
59 heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
60 mask=0*heff; mask(find(heff>.001))=1;
61 uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
62 vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
63 clf
64 subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
65 subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
66 subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
67 subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
68
69
70 ##########################################################################
71 ##########################################################################
72 # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
73
74 cd MITgcm/verification/global_ocean.cs32x15/code
75 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
76 \cp ../code_alt/code.176t_8x4/* .
77 cd ../build
78 \rm *
79 ../../../tools/genmake2 -mods=../code
80 make depend
81 make
82 cd ..
83 mkdir run
84 cd run
85 \rm *
86 \cp ../input/* .
87 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
88 ../build/mitgcmuv >& output.txt
89
90
91 ##########################################################################
92 ##########################################################################
93 # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
94
95 cd MITgcm/verification/global_ocean.cs32x15/code
96 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
98 \cp SIZE.h_mpi SIZE.h
99
100 cd ../build
101 \rm *
102 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
103 make depend
104 make -j
105
106 cd ..
107 mkdir run
108 cd run
109 \rm *
110 \cp ../input/* .
111 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
112 mpirun -np 2 ../build/mitgcmuv
113
114
115 ##########################################################################
116 ##########################################################################
117 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
118 # starting with pickup file from end of 1992
119 # requires input files in sudirectories run_template and ncep_rgau
120
121 cd MITgcm/verification/global_ocean.cs32x15/code
122 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
123 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
124 \cp packages.conf_hr packages.conf
125
126 cd ../build
127 \rm *
128 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
129 make depend
130 make -j
131
132 cd ..
133 mkdir run
134 cd run
135 \rm *
136 \cp ../input/* .
137 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
138 qsub job_altix92_54t
139
140
141 ##########################################################################
142 ##########################################################################
143 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
144 # requires input files in sudirectories run_template and ncep_rgau
145 # these can be obained from lou:/u/menemenl/cube
146
147 cd MITgcm/verification/global_ocean.cs32x15/code
148 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
149 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
150 \cp SIZE.h_216 SIZE.h
151 \cp packages.conf_hr packages.conf
152
153 cd ../build
154 \rm *
155 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
156 make depend
157 make -j
158
159 cd ..
160 mkdir run
161 cd run
162 \rm *
163 \cp ../input/* .
164 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
165 ln -sf ../../../../run_template/* .
166 \rm pickup*
167 ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216
168 ln -sf ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216
169 \cp ../build/mitgcmuv .
170 qsub job_altix
171
172
173 ##########################################################################
174 ##########################################################################
175 # 510*510*6*50, 1500-tile, 150-cpu, excludes land
176 # uses s1500t_17x51 configuration
177
178 cd MITgcm/verification/global_ocean.cs32x15/code
179 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
180 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
181 \cp SIZE.h_150 SIZE.h
182 \cp packages.conf_hr packages.conf
183
184 cd ../build
185 \rm *
186 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
187 make depend
188 make -j
189
190 cd ..
191 mkdir run
192 cd run
193 \rm *
194 \cp ../input/* .
195 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
196 ln -sf ../../../../run_template/* .
197 \rm pickup*
198 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
199 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
200 \cp ../build/mitgcmuv mitgcmuv150
201 qsub job_altix150
202
203
204
205
206 ##########################################################################
207 ##########################################################################
208 # 510*510*6*50, 1500-tile, 375-cpu, excludes land
209 # uses s1500t_17x51 configuration
210 # example for running on c17-c20 using arrayd
211
212 cd MITgcm/verification/global_ocean.cs32x15/code
213 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
214 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
215 \cp SIZE.h_375 SIZE.h
216 \cp packages.conf_hr packages.conf
217
218 cd ../build
219 \rm *
220 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
221 make depend
222 make -j
223
224 cd ..
225 mkdir run
226 cd run
227 \rm *
228 \cp ../input/* .
229 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
230 ln -sf ../../../../run_template/* .
231 \rm pickup*
232 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
233 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
234 \cp ../build/mitgcmuv .
235 job_c20_375cpu < /dev/null >&! output.run &
236
237
238
239
240
241
242
243
244
245
246
247
248 ##########################################################################
249 ##########################################################################
250 # 510*510*6*50, 1500-tile, 375-cpu, excludes land
251 # uses s1500t_17x51 configuration
252 # example for running on c17-c20 using arrayd
253
254 cd MITgcm/verification/global_ocean.cs32x15/code
255 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
256 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
257 \cp SIZE.h_375 SIZE.h
258 \cp packages.conf_hr packages.conf
259
260 cd ../build
261 \rm *
262 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
263 make depend
264 make -j
265
266 cd ..
267 mkdir run
268 cd run
269 \rm *
270 \cp ../input/* .
271 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
272 ln -sf ../../../../run_template/* .
273 \rm pickup*
274 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
275 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
276 \cp ../build/mitgcmuv .
277 job_c20_375cpu < /dev/null >&! output.run &
278
279
280 ##########################################################################
281 ##########################################################################
282 # 510*510*6*50, 1500-tile, 500-cpu, excludes land
283 # uses s1500t_17x51 configuration
284 # example for running on c17-c20 using arrayd
285
286 cd MITgcm/verification/global_ocean.cs32x15/code
287 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
288 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
289 \cp SIZE.h_500 SIZE.h
290 \cp packages.conf_hr packages.conf
291
292 cd ../build
293 \rm *
294 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
295 make depend
296 make -j
297
298 cd ..
299 mkdir run
300 cd run
301 \rm *
302 \cp ../input/* .
303 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
304 ln -sf ../../../../run_template/* .
305 \rm pickup*
306 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
307 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
308 \cp ../build/mitgcmuv .
309 job_c19_500cpu < /dev/null >&! output.run &
310
311
312
313
314
315 ##########################################################################
316 ##########################################################################
317 # 510*510*6*50, 216-cpu cube sphere on cosmos
318
319 cd MITgcm/verification/global_ocean.cs32x15/code
320 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
321 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
322 \cp SIZE.h_216 SIZE.h
323 \cp packages.conf_hr packages.conf
324
325 module unload latest_intel80
326 module unload mpich-gm-intel80
327 module load latest_intel81
328 module load mpich-gm-intel81
329
330 cd ../build
331 \rm *
332 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
333 make depend
334 make -j
335
336 cd ..
337 mkdir run
338 cd run
339 \rm *
340 \cp ../input/* .
341 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
342 ln -sf ../../../../run_template/* .
343 \rm pickup*
344 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
345 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
346 \cp ../build/mitgcmuv .
347 bsub < job_cosmos
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368 ##########################################################################
369 ##########################################################################
370 # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
371 # requires input files in sudirectories run_template and ncep_rgau
372 # presently residing under orion:/tmp1/dmenem/cube
373
374 cd MITgcm/verification/global_ocean.cs32x15/code
375 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
376 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
377 \cp SIZE.h_54 SIZE.h
378 \cp packages.conf_hr packages.conf
379
380 cd ../build
381 \rm *
382 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
383 make depend
384 make -j
385
386 cd ..
387 mkdir run
388 cd run
389 \rm *
390 \cp ../input/* .
391 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
392 qsub job_orion
393
394
395 ##########################################################################
396 ##########################################################################
397 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
398 # requires input files in sudirectories run_template and ncep_rgau
399 # presently residing under orion:/tmp1/dmenem/cube
400
401 cd MITgcm/verification/global_ocean.cs32x15/code
402 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
403 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
404 \cp SIZE.h_41 SIZE.h
405 \cp packages.conf_hr packages.conf
406
407 cd ../build
408 \rm *
409 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
410 make depend
411 make -j
412
413 cd ..
414 mkdir run
415 cd run
416 \rm *
417 \cp ../input/* .
418 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
419 qsub job_orion41
420
421
422 ##########################################################################
423 ##########################################################################
424 # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
425 # requires input files in sudirectories run_template and ncep_rgau
426 # presently residing under orion:/tmp1/dmenem/cube
427
428 cd MITgcm/verification/global_ocean.cs32x15/code
429 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
430 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
431 \cp SIZE.h_50 SIZE.h
432 \cp packages.conf_hr packages.conf
433
434 cd ../build
435 \rm *
436 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
437 make depend
438 make -j
439
440 cd ..
441 mkdir run
442 cd run
443 \rm *
444 \cp ../input/* .
445 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
446 qsub job_orion
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