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revision 1.68 by dimitri, Mon Oct 9 21:56:42 2006 UTC revision 1.81 by dimitri, Tue Dec 12 04:20:42 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
3    =================
4    UPDATES
5    
6    December 11, 2006: preparing for cube47, same as cube43
7    but with Arctic monthly river runoff climatology
8    
9    December 5, 2006: 216-CPU code for cube46
10    Changed diagnostics to accomodate JMCs latest and some
11    changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
12    to speed up code.
13    
14    November 7, 2006: 216-CPU code for cube43
15    Bug fixes in growth.F routine and new set of diagnostics
16    
17    October 15, 2006: 216-CPU code for cube40
18    
19  September 28, 2006: 216-CPU code for cube38  September 28, 2006: 216-CPU code for cube38
20    
21  September 4, 2006  September 4, 2006
# Line 7  Modified 32*32*6*15 experiments to use g Line 23  Modified 32*32*6*15 experiments to use g
23   verification/tutorial_held_suarez_cs/input instead of   verification/tutorial_held_suarez_cs/input instead of
24   tile* files from verification/global_ocean.cs32x15/input   tile* files from verification/global_ocean.cs32x15/input
25    
26  August 8, 2006  August 8, 2006: 216-CPU code and input used for cube37
 216-CPU code and input used for integrating cube37  
27  using "June 10, 2006" MITgcm code.  using "June 10, 2006" MITgcm code.
28    
29  for online T/S profile diagnostics all that is needed is  for online T/S profile diagnostics all that is needed is
# Line 17  for online T/S profile diagnostics all t Line 32  for online T/S profile diagnostics all t
32  see pkg/ecco/ecco_cost_init_fixed.F  see pkg/ecco/ecco_cost_init_fixed.F
33      pkg/ecco/cost_averagesfields.F      pkg/ecco/cost_averagesfields.F
34    
35    ##########################################################################
36    ##########################################################################
37    # Get forcing files, etc.
38    # Example below is for cube46 on /nobackup2a/menemenl
39    
40    cd /nobackup2a/menemenl
41    mkdir cube46
42    cd cube46
43    ln -sf ../run_template .
44    ln -sf ../ncep_rgau .
45    
46    
47  ##########################################################################  ##########################################################################
48  ##########################################################################  ##########################################################################
49  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
 #  
50    
51    bash or sh shell:    bash or sh shell:
52      $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'      $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
# Line 44  cvs co MITgcm/verification/tutorial_held Line 69  cvs co MITgcm/verification/tutorial_held
69    
70  ##########################################################################  ##########################################################################
71  ##########################################################################  ##########################################################################
72    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
73    
74    cd MITgcm/verification/global_ocean.cs32x15/code
75    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
76    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
77    \cp SIZE.h_216 SIZE.h
78    \cp packages.conf_hr packages.conf
79    
80    cd ../build
81    \rm *
82    ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
83    make depend
84    make -j
85    
86    cd ..
87    mkdir run
88    cd run
89    \rm *
90    \cp ../input/* .
91    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
92    ln -sf ../../../../run_template/* .
93    \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
94    \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
95    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
96    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
97    \cp ../build/mitgcmuv .
98    qsub job_altix
99    
100    
101    ##########################################################################
102    ##########################################################################
103  # 32*32*6*15, 1-cpu cube sphere  # 32*32*6*15, 1-cpu cube sphere
104    
105  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
# Line 69  comparison output is in: Line 125  comparison output is in:
125  to use matlab to look at the output  to use matlab to look at the output
126  matlab  matlab
127    
128  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...  for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
129           'QNETtave','FVtave','FUtave','EmPmRtave'}           'surForcT','oceTAUX','oceTAUY','surForcS'}
130      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
131      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
132  end  end
133    
134  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
135  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
136  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
137  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
138  clf  clf
139  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
140  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
# Line 87  subplot(224), mypcolor(vice(:,:,6)'); co Line 143  subplot(224), mypcolor(vice(:,:,6)'); co
143    
144    
145  ##########################################################################  ##########################################################################
 ##########################################################################  
 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  
 # requires input files in sudirectories run_template and ncep_rgau  
 # these can be obained from lou:/u/menemenl/cube  
   
 cd MITgcm/verification/global_ocean.cs32x15/code  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  
 \cp SIZE.h_216 SIZE.h  
 \cp packages.conf_hr packages.conf  
   
 cd ../build  
 \rm *  
 ../../../tools/genmake2 -mods=../code -of  
 ../../../tools/build_options/linux_ia\  
 64_ifort+mpi_altix_nas  
 make depend  
 make -j  
   
 cd ..  
 mkdir run  
 cd run  
 \rm *  
 \cp ../input/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  
 ln -sf ../../../../run_template/* .  
 \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin  
 \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t  
 ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216  
 ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38  
 pickup_seaice.\  
 0000000216  
 \cp ../build/mitgcmuv .  
 qsub job_altix  
   
   
 ##########################################################################  
146  ##########################################################################  ##########################################################################
147  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
148    
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