/[MITgcm]/MITgcm_contrib/high_res_cube/README_ice
ViewVC logotype

Diff of /MITgcm_contrib/high_res_cube/README_ice

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.52 by dimitri, Sat Feb 19 06:28:28 2005 UTC revision 1.80 by dimitri, Wed Dec 6 01:07:44 2006 UTC
# Line 1  Line 1 
1  daInstructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  
3  Code and input used for integrating cube22.  =================
4    UPDATES
5    
6    December 5, 2006: 216-CPU code for cube46
7    Changed diagnostics to accomodate JMCs latest and some
8    changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
9    to speed up code.
10    
11    November 7, 2006: 216-CPU code for cube43
12    Bug fixes in growth.F routine and new set of diagnostics
13    
14    October 15, 2006: 216-CPU code for cube40
15    
16    September 28, 2006: 216-CPU code for cube38
17    
18    September 4, 2006
19    Modified 32*32*6*15 experiments to use grid_cs32.* files from
20     verification/tutorial_held_suarez_cs/input instead of
21     tile* files from verification/global_ocean.cs32x15/input
22    
23    August 8, 2006: 216-CPU code and input used for cube37
24    using "June 10, 2006" MITgcm code.
25    
26    for online T/S profile diagnostics all that is needed is
27      profiles_init_fixed
28      profiles_inloop
29    see pkg/ecco/ecco_cost_init_fixed.F
30        pkg/ecco/cost_averagesfields.F
31    
32    ##########################################################################
33    ##########################################################################
34    # Get forcing files, etc.
35    # Example below is for cube46 on /nobackup2a/menemenl
36    
37    cd /nobackup2a/menemenl
38    mkdir cube46
39    cd cube46
40    ln -sf ../run_template .
41    ln -sf ../ncep_rgau .
42    
43    
44  ##########################################################################  ##########################################################################
45  ##########################################################################  ##########################################################################
46  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
47    
48      bash or sh shell:
49        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
50        $ cvs login
51          ( enter the CVS password: "cvsanon" )
52    
53      tcsh or csh shell:
54        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
55        $ cvs login
56          ( enter the CVS password: "cvsanon" )
57    
58  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
59  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
60  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
61  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
62  cvs co MITgcm_code  cvs co MITgcm_code
63  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
64  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/tutorial_held_suarez_cs/input
65    
66    
67    ##########################################################################
68    ##########################################################################
69    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
70    
71    cd MITgcm/verification/global_ocean.cs32x15/code
72    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
73    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
74    \cp SIZE.h_216 SIZE.h
75    \cp packages.conf_hr packages.conf
76    
77    cd ../build
78    \rm *
79    ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
80    make depend
81    make -j
82    
83    cd ..
84    mkdir run
85    cd run
86    \rm *
87    \cp ../input/* .
88    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
89    ln -sf ../../../../run_template/* .
90    \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
91    \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
92    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
93    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
94    \cp ../build/mitgcmuv .
95    qsub job_altix
96    
97    
98  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 111  cd ..
111  mkdir run  mkdir run
112  cd run  cd run
113  \rm *  \rm *
114    \cp ../../tutorial_held_suarez_cs/input/grid* .
115  \cp ../input/* .  \cp ../input/* .
116  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
117  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 42  comparison output is in: Line 122  comparison output is in:
122  to use matlab to look at the output  to use matlab to look at the output
123  matlab  matlab
124    
125  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
126      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);           'surForcT','oceTAUX','oceTAUY','surForcS'}
127        tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
128      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
129  end  end
130    
131  heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
132  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
133  uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
134  vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
135  clf  clf
136  subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
137  subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
138  subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
139  subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
140    
141    
142  ##########################################################################  ##########################################################################
# Line 74  cd .. Line 155  cd ..
155  mkdir run  mkdir run
156  cd run  cd run
157  \rm *  \rm *
158    \cp ../../tutorial_held_suarez_cs/input/grid* .
159  \cp ../input/* .  \cp ../input/* .
160  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
161  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
162    
 comparison output is in:  
 ../../../../MITgcm_contrib/high_res_cube/results/output.txt  
   
 to use matlab to look at the output  
 matlab  
   
 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  
     tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);  
     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause  
 end  
   
 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  
 mask=0*heff; mask(find(heff>.001))=1;  
 uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  
 vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  
 clf  
 subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  
 subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  
 subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  
 subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  
   
163    
164  ##########################################################################  ##########################################################################
165  ##########################################################################  ##########################################################################
166  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
167    
168  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
169  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 111  cd MITgcm/verification/global_ocean.cs32 Line 172  cd MITgcm/verification/global_ocean.cs32
172    
173  cd ../build  cd ../build
174  \rm *  \rm *
175  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
176  make depend  make depend
177  make -j  make -j
178    
# Line 119  cd .. Line 180  cd ..
180  mkdir run  mkdir run
181  cd run  cd run
182  \rm *  \rm *
183    \cp ../../tutorial_held_suarez_cs/input/grid* .
184  \cp ../input/* .  \cp ../input/* .
185  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
186  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 152  qsub job_altix92_54t Line 214  qsub job_altix92_54t
214    
215  ##########################################################################  ##########################################################################
216  ##########################################################################  ##########################################################################
217  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
218  # requires input files in sudirectories run_template and ncep_rgau  # uses s1500t_17x51 configuration
 # these can be obained from lou:/u/menemenl/cube  
219    
220  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
221  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
222  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
223  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_150 SIZE.h
224  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
225    
226  cd ../build  cd ../build
# Line 176  cd run Line 237  cd run
237  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
238  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
239  \rm pickup*  \rm pickup*
240  ln -sf ../../../../run_template/pickup.0000316440.cube20 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
241  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube20 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
242  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv mitgcmuv150
243  qsub job_altix92  qsub job_altix150
244    
245    
246    ##########################################################################
247    ##########################################################################
248    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
249    # uses s1500t_17x51 configuration
250    # example for running on c17-c20 using arrayd
251    
252    cd MITgcm/verification/global_ocean.cs32x15/code
253    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
254    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
255    \cp SIZE.h_375 SIZE.h
256    \cp packages.conf_hr packages.conf
257    
258    cd ../build
259    \rm *
260    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
261    make depend
262    make -j
263    
264    cd ..
265    mkdir run
266    cd run
267    \rm *
268    \cp ../input/* .
269    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
270    ln -sf ../../../../run_template/* .
271    \rm pickup*
272    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
273    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
274    \cp ../build/mitgcmuv .
275    job_c20_375cpu < /dev/null >&! output.run &
276    
277    
278    ##########################################################################
279    ##########################################################################
280    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
281    # uses s1500t_17x51 configuration
282    # example for running on c17-c20 using arrayd
283    
284    cd MITgcm/verification/global_ocean.cs32x15/code
285    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
286    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
287    \cp SIZE.h_375 SIZE.h
288    \cp packages.conf_hr packages.conf
289    
290    cd ../build
291    \rm *
292    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
293    make depend
294    make -j
295    
296    cd ..
297    mkdir run
298    cd run
299    \rm *
300    \cp ../input/* .
301    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
302    ln -sf ../../../../run_template/* .
303    \rm pickup*
304    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
305    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
306    \cp ../build/mitgcmuv .
307    job_c20_375cpu < /dev/null >&! output.run &
308    
309    
310    ##########################################################################
311    ##########################################################################
312    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
313    # uses s1500t_17x51 configuration
314    # example for running on c17-c20 using arrayd
315    
316    cd MITgcm/verification/global_ocean.cs32x15/code
317    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
318    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
319    \cp SIZE.h_500 SIZE.h
320    \cp packages.conf_hr packages.conf
321    
322    cd ../build
323    \rm *
324    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
325    make depend
326    make -j
327    
328    cd ..
329    mkdir run
330    cd run
331    \rm *
332    \cp ../input/* .
333    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
334    ln -sf ../../../../run_template/* .
335    \rm pickup*
336    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
337    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
338    \cp ../build/mitgcmuv .
339    job_c19_500cpu < /dev/null >&! output.run &
340    
341    
342    ##########################################################################
343    ##########################################################################
344    # 510*510*6*50, 216-cpu cube sphere on cosmos
345    
346    cd MITgcm/verification/global_ocean.cs32x15/code
347    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
348    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
349    \cp SIZE.h_216 SIZE.h
350    \cp packages.conf_hr packages.conf
351    
352    module unload latest_intel80
353    module unload mpich-gm-intel80
354    module load latest_intel81
355    module load mpich-gm-intel81
356    
357    cd ../build
358    \rm *
359    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
360    make depend
361    make -j
362    
363    cd ..
364    mkdir run
365    cd run
366    \rm *
367    \cp ../input/* .
368    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
369    ln -sf ../../../../run_template/* .
370    \rm pickup*
371    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
372    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
373    \cp ../build/mitgcmuv .
374    bsub < job_cosmos
375    
376    
377  ##########################################################################  ##########################################################################
# Line 282  cd run Line 453  cd run
453  \cp ../input/* .  \cp ../input/* .
454  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
455  qsub job_orion  qsub job_orion
   
   
 ##########################################################################  
 ##########################################################################  
 # matlab script for generating pChkptFreq  
   
 nTimeSteps=26352;  
 for niter0=216:26352:(26352*12)  
  pChkptFreq=(niter0+nTimeSteps)*1200;  
  day=pChkptFreq/24/60/60;  
  disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...  
  datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])  
 end  
   
 niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600  
 niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000  
 niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400  
 niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800  
 niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200  
 niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600  
 niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000  
 niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400  
 niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  
 niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  
 niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  
 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  
   
   
   
   
   
   
 #!/bin/csh  
 \cp data.pkg_hr data.pkg  
 \cp data.seaice_hr data.seaice  
 \cp data.exf_clim_hr data.exf_clim  
   
 \cp data_hr92 data  
 ./modpickup  
 \cp data.exf_hr92 data.exf  
 /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv  
 mkdir out.1992  
 \mv STDOUT.0000 *.data pickup*.meta out.1992  
 \cp data* out.1992  
 \rm STD* *.meta  
   
Legend:
Removed from v.1.52  
changed lines
  Added in v.1.80
  ViewVC Help
Powered by ViewVC 1.1.22