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revision 1.41 by dimitri, Fri Jul 9 23:54:52 2004 UTC revision 1.52 by dimitri, Sat Feb 19 06:28:28 2005 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  daInstructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: July 9, 2004.  Date last updated: February 17, 2005
3  Code and input used for integrating cube9.  Code and input used for integrating cube22.
4    
5    
6  ##########################################################################  ##########################################################################
# Line 11  cvs co MITgcm_contrib/high_res_cube/READ Line 11  cvs co MITgcm_contrib/high_res_cube/READ
11  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co MITgcm_contrib/edge_problem  cvs co MITgcm_code
15  cvs co -r checkpoint54b_post MITgcm_code  cvs co MITgcm/verification/global_ocean.cs32x15
16  cvs co -r checkpoint54b_post MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/testreport
 cvs co -r checkpoint54b_post MITgcm/verification/testreport  
17    
18    
19  ##########################################################################  ##########################################################################
# Line 127  mpirun -np 2 ../build/mitgcmuv Line 126  mpirun -np 2 ../build/mitgcmuv
126    
127  ##########################################################################  ##########################################################################
128  ##########################################################################  ##########################################################################
 # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  
 # requires input files in sudirectories run_template and ncep_rgau  
 # presently residing under orion:/tmp1/dmenem/cube  
   
 cd MITgcm/verification/global_ocean.cs32x15/code  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  
 \cp SIZE.h_54 SIZE.h  
 \cp packages.conf_hr packages.conf  
   
 cd ../build  
 \rm *  
 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  
 make depend  
 make -j  
   
 cd ..  
 mkdir run  
 cd run  
 \rm *  
 \cp ../input/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  
 qsub job_orion  
   
   
 ##########################################################################  
 ##########################################################################  
129  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
130  # starting with pickup file from end of 1992  # starting with pickup file from end of 1992
131  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
# Line 180  qsub job_altix92_54t Line 152  qsub job_altix92_54t
152    
153  ##########################################################################  ##########################################################################
154  ##########################################################################  ##########################################################################
155  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
156  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
157  # these can be obained from lou:/u/menemenl/cube  # these can be obained from lou:/u/menemenl/cube
158    
# Line 192  cd MITgcm/verification/global_ocean.cs32 Line 164  cd MITgcm/verification/global_ocean.cs32
164    
165  cd ../build  cd ../build
166  \rm *  \rm *
167  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
168  make depend  make depend
169  make -j  make -j
170    
# Line 202  cd run Line 174  cd run
174  \rm *  \rm *
175  \cp ../input/* .  \cp ../input/* .
176  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
177    ln -sf ../../../../run_template/* .
178    \rm pickup*
179    ln -sf ../../../../run_template/pickup.0000316440.cube20 pickup.0000000216.data
180    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube20 pickup_seaice.0000000216.data
181    \cp ../build/mitgcmuv .
182  qsub job_altix92  qsub job_altix92
183    
184    
# Line 226  qsub job_altix92 Line 203  qsub job_altix92
203    
204    
205    
206    ##########################################################################
207    ##########################################################################
208    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
209    # requires input files in sudirectories run_template and ncep_rgau
210    # presently residing under orion:/tmp1/dmenem/cube
211    
212    cd MITgcm/verification/global_ocean.cs32x15/code
213    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
214    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
215    \cp SIZE.h_54 SIZE.h
216    \cp packages.conf_hr packages.conf
217    
218    cd ../build
219    \rm *
220    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
221    make depend
222    make -j
223    
224    cd ..
225    mkdir run
226    cd run
227    \rm *
228    \cp ../input/* .
229    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
230    qsub job_orion
231    
232    
233  ##########################################################################  ##########################################################################
# Line 308  niter0 = 211032, day = 3297, 10-Jan-2001 Line 308  niter0 = 211032, day = 3297, 10-Jan-2001
308  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
309  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
310  niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
311    
312    
313    
314    
315    
316    
317    #!/bin/csh
318    \cp data.pkg_hr data.pkg
319    \cp data.seaice_hr data.seaice
320    \cp data.exf_clim_hr data.exf_clim
321    
322    \cp data_hr92 data
323    ./modpickup
324    \cp data.exf_hr92 data.exf
325    /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv
326    mkdir out.1992
327    \mv STDOUT.0000 *.data pickup*.meta out.1992
328    \cp data* out.1992
329    \rm STD* *.meta
330    
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