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revision 1.37 by dimitri, Tue May 11 04:03:55 2004 UTC revision 1.52 by dimitri, Sat Feb 19 06:28:28 2005 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  daInstructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: March 28, 2004.  Date last updated: February 17, 2005
3  Code and input used for integrating cube5.  Code and input used for integrating cube22.
4    
5    
6  ##########################################################################  ##########################################################################
7  ##########################################################################  ##########################################################################
8  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs login ( CVS password: cvsanon )  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input  cvs co MITgcm_code
15  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results  cvs co MITgcm/verification/global_ocean.cs32x15
16  cvs co -r hrcube5 MITgcm_code  cvs co MITgcm/verification/testreport
 cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15  
17    
18    
19  ##########################################################################  ##########################################################################
# Line 112  cd MITgcm/verification/global_ocean.cs32 Line 111  cd MITgcm/verification/global_ocean.cs32
111    
112  cd ../build  cd ../build
113  \rm *  \rm *
114  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
115  make depend  make depend
116  make  make -j
117    
118  cd ..  cd ..
119  mkdir run  mkdir run
# Line 127  mpirun -np 2 ../build/mitgcmuv Line 126  mpirun -np 2 ../build/mitgcmuv
126    
127  ##########################################################################  ##########################################################################
128  ##########################################################################  ##########################################################################
129  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
130    # starting with pickup file from end of 1992
131  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
 # presently residing under orion:/tmp1/dmenem/cube  
132    
133  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
134  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
 \cp SIZE.h_54 SIZE.h  
136  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
137    
138  cd ../build  cd ../build
139  \rm *  \rm *
140  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
141  make depend  make depend
142  make  make -j
143    
144  cd ..  cd ..
145  mkdir run  mkdir run
# Line 149  cd run Line 147  cd run
147  \rm *  \rm *
148  \cp ../input/* .  \cp ../input/* .
149  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
150  qsub job_orion  qsub job_altix92_54t
151    
152    
153  ##########################################################################  ##########################################################################
154  ##########################################################################  ##########################################################################
155  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
 # starting with pickup file from end of 1992  
156  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
157  # presently residing under orion:/tmp1/dmenem/cube  # these can be obained from lou:/u/menemenl/cube
158    
159  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
160  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
161  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
162    \cp SIZE.h_216 SIZE.h
163  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
164    
165  cd ../build  cd ../build
166  \rm *  \rm *
167  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
168  make depend  make depend
169  make  make -j
170    
171  cd ..  cd ..
172  mkdir run  mkdir run
# Line 176  cd run Line 174  cd run
174  \rm *  \rm *
175  \cp ../input/* .  \cp ../input/* .
176  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
177  qsub job_altix93_newIO  ln -sf ../../../../run_template/* .
178    \rm pickup*
179    ln -sf ../../../../run_template/pickup.0000316440.cube20 pickup.0000000216.data
180    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube20 pickup_seaice.0000000216.data
181    \cp ../build/mitgcmuv .
182    qsub job_altix92
183    
184    
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201    
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203    
204    
205    
206  ##########################################################################  ##########################################################################
207  ##########################################################################  ##########################################################################
208  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
209  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
210  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
211    
212  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
213  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
214  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
215  \cp SIZE.h_41 SIZE.h  \cp SIZE.h_54 SIZE.h
216  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
217    
218  cd ../build  cd ../build
219  \rm *  \rm *
220  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
221  make depend  make depend
222  make  make -j
223    
224  cd ..  cd ..
225  mkdir run  mkdir run
# Line 203  cd run Line 227  cd run
227  \rm *  \rm *
228  \cp ../input/* .  \cp ../input/* .
229  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
230  qsub job_orion41  qsub job_orion
231    
232    
233  ##########################################################################  ##########################################################################
234  ##########################################################################  ##########################################################################
235  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
236  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
237  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
238    
239  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
240  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
241  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
242  \cp SIZE.h_50 SIZE.h  \cp SIZE.h_41 SIZE.h
243  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
244    
245  cd ../build  cd ../build
246  \rm *  \rm *
247  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
248  make depend  make depend
249  make  make -j
250    
251  cd ..  cd ..
252  mkdir run  mkdir run
# Line 230  cd run Line 254  cd run
254  \rm *  \rm *
255  \cp ../input/* .  \cp ../input/* .
256  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
257  qsub job_orion  qsub job_orion41
258    
259    
260  ##########################################################################  ##########################################################################
261  ##########################################################################  ##########################################################################
262  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
263  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
264  # these can be obained from lou:/u/menemenl/cube  # presently residing under orion:/tmp1/dmenem/cube
265    
266  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
267  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
268  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
269  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_50 SIZE.h
270  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
271    
272  cd ../build  cd ../build
273  \rm *  \rm *
274  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
275  make depend  make depend
276  make  make -j
277    
278  cd ..  cd ..
279  mkdir run  mkdir run
# Line 257  cd run Line 281  cd run
281  \rm *  \rm *
282  \cp ../input/* .  \cp ../input/* .
283  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
284  qsub job_altix  qsub job_orion
285    
286    
287  ##########################################################################  ##########################################################################
# Line 284  niter0 = 211032, day = 3297, 10-Jan-2001 Line 308  niter0 = 211032, day = 3297, 10-Jan-2001
308  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
309  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
310  niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
311    
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315    
316    
317    #!/bin/csh
318    \cp data.pkg_hr data.pkg
319    \cp data.seaice_hr data.seaice
320    \cp data.exf_clim_hr data.exf_clim
321    
322    \cp data_hr92 data
323    ./modpickup
324    \cp data.exf_hr92 data.exf
325    /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv
326    mkdir out.1992
327    \mv STDOUT.0000 *.data pickup*.meta out.1992
328    \cp data* out.1992
329    \rm STD* *.meta
330    
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