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revision 1.40 by dimitri, Thu Jul 1 03:52:24 2004 UTC revision 1.46 by dimitri, Mon Dec 20 22:47:23 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: March 28, 2004.  Date last tested: July 9, 2004.
3  Code and input used for integrating cube5.  Code and input used for integrating cube9.
4    
5    
6  ##########################################################################  ##########################################################################
# Line 11  cvs co MITgcm_contrib/high_res_cube/READ Line 11  cvs co MITgcm_contrib/high_res_cube/READ
11  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
 cvs co MITgcm_contrib/edge_problem  
14  cvs co MITgcm_code  cvs co MITgcm_code
15  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
16  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/testreport
# Line 112  cd MITgcm/verification/global_ocean.cs32 Line 111  cd MITgcm/verification/global_ocean.cs32
111    
112  cd ../build  cd ../build
113  \rm *  \rm *
114  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
115  make depend  make depend
116  make  make -j
117    
118  cd ..  cd ..
119  mkdir run  mkdir run
# Line 127  mpirun -np 2 ../build/mitgcmuv Line 126  mpirun -np 2 ../build/mitgcmuv
126    
127  ##########################################################################  ##########################################################################
128  ##########################################################################  ##########################################################################
129  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
130    # starting with pickup file from end of 1992
131  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
 # presently residing under orion:/tmp1/dmenem/cube  
132    
133  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
134  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
 \cp SIZE.h_54 SIZE.h  
136  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
137    
138  cd ../build  cd ../build
139  \rm *  \rm *
140  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
141  make depend  make depend
142  make  make -j
143    
144  cd ..  cd ..
145  mkdir run  mkdir run
# Line 149  cd run Line 147  cd run
147  \rm *  \rm *
148  \cp ../input/* .  \cp ../input/* .
149  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
150  qsub job_orion  qsub job_altix92_54t
151    
152    
153  ##########################################################################  ##########################################################################
154  ##########################################################################  ##########################################################################
155  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-cpu cube sphere on altix with efc
 # starting with pickup file from end of 1992  
156  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
157    # these can be obained from lou:/u/menemenl/cube
158    
159  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
160  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
161  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
162    \cp SIZE.h_216 SIZE.h
163  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
164    
165  cd ../build  cd ../build
166  \rm *  \rm *
167  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
168  make depend  make depend
169  make  make -j 4
170    
171  cd ..  cd ..
172  mkdir run  mkdir run
# Line 175  cd run Line 174  cd run
174  \rm *  \rm *
175  \cp ../input/* .  \cp ../input/* .
176  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
177  qsub job_altix93_newIO  ln -sf ../../../../run_template/* .
178    ln -sf pickup.0000290088.data.cube10 pickup.0000000216.data
179    ln -sf pickup_seaice.0000290088.data.cube10 pickup_seaice.0000000216.data
180    \cp ../build/mitgcmuv .
181    qsub job_altix92
182    
183    
184    
185    
186    
187    
188    
189    
190    
191    
192    
193    
194    
195    
196    
197    
198    
199    
200  ##########################################################################  ##########################################################################
201  ##########################################################################  ##########################################################################
202  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
203  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
204  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
205    
206  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
207  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
208  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
209  \cp SIZE.h_41 SIZE.h  \cp SIZE.h_54 SIZE.h
210  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
211    
212  cd ../build  cd ../build
213  \rm *  \rm *
214  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
215  make depend  make depend
216  make  make -j
217    
218  cd ..  cd ..
219  mkdir run  mkdir run
# Line 202  cd run Line 221  cd run
221  \rm *  \rm *
222  \cp ../input/* .  \cp ../input/* .
223  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
224  qsub job_orion41  qsub job_orion
225    
226    
227  ##########################################################################  ##########################################################################
228  ##########################################################################  ##########################################################################
229  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
230  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
231  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
232    
233  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
234  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
235  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
236  \cp SIZE.h_50 SIZE.h  \cp SIZE.h_41 SIZE.h
237  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
238    
239  cd ../build  cd ../build
240  \rm *  \rm *
241  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
242  make depend  make depend
243  make  make -j
244    
245  cd ..  cd ..
246  mkdir run  mkdir run
# Line 229  cd run Line 248  cd run
248  \rm *  \rm *
249  \cp ../input/* .  \cp ../input/* .
250  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
251  qsub job_orion  qsub job_orion41
252    
253    
254  ##########################################################################  ##########################################################################
255  ##########################################################################  ##########################################################################
256  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
257  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
258  # these can be obained from lou:/u/menemenl/cube  # presently residing under orion:/tmp1/dmenem/cube
259    
260  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
261  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
262  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
263  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_50 SIZE.h
264  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
265    
266  cd ../build  cd ../build
267  \rm *  \rm *
268  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
269  make depend  make depend
270  make  make -j
271    
272  cd ..  cd ..
273  mkdir run  mkdir run
# Line 256  cd run Line 275  cd run
275  \rm *  \rm *
276  \cp ../input/* .  \cp ../input/* .
277  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
278  qsub job_altix  qsub job_orion
279    
280    
281  ##########################################################################  ##########################################################################
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