/[MITgcm]/MITgcm_contrib/high_res_cube/README_ice
ViewVC logotype

Diff of /MITgcm_contrib/high_res_cube/README_ice

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.2 by dimitri, Sun Nov 23 20:11:39 2003 UTC revision 1.40 by dimitri, Thu Jul 1 03:52:24 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: November 21, 2003.  Date last tested: March 28, 2004.
3    Code and input used for integrating cube5.
4    
5    
6    ##########################################################################
7    ##########################################################################
8    # getting the code from anonymous CVS server
9    
 setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  
 cvs login ( CVS password: cvsanon )  
 cvs co MITgcm_contrib/high_res_cube/code-mods  
 cvs co MITgcm_contrib/high_res_cube/matlab-grid-converter  
10  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs co -r checkpoint52a_post MITgcm_code  cvs co MITgcm_contrib/high_res_cube/code-mods
12    cvs co MITgcm_contrib/high_res_cube/input
13    cvs co MITgcm_contrib/high_res_cube/results
14    cvs co MITgcm_contrib/edge_problem
15    cvs co MITgcm_code
16  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
17    cvs co MITgcm/verification/testreport
18    
19    
20    ##########################################################################
21    ##########################################################################
22    # 32*32*6*15, 1-cpu cube sphere
23    
24  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
25  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
27  \rm mdsio_readfield.F  cd ../build
28    \rm *
29    ../../../tools/genmake2 -mods=../code
30    make depend
31    make
32  cd ..  cd ..
33  mkdir build  mkdir run
34  cd build  cd run
35  ../code/genmake2 -mods=../code  \rm *
36    \cp ../input/* .
37    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
38    ../build/mitgcmuv >& output.txt
39    
40    comparison output is in:
41    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
42    
43    to use matlab to look at the output
44    matlab
45    
46    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
47        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49    end
50    
51    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
52    mask=0*heff; mask(find(heff>.001))=1;
53    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
54    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
55    clf
56    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
57    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
58    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
59    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
60    
61    
62    ##########################################################################
63    ##########################################################################
64    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
65    
66    cd MITgcm/verification/global_ocean.cs32x15/code
67    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68    \cp ../code_alt/code.176t_8x4/* .
69    cd ../build
70    \rm *
71    ../../../tools/genmake2 -mods=../code
72  make depend  make depend
73  make  make
74  cd ..  cd ..
75  mkdir run  mkdir run
76  cd run  cd run
77  cp ../input/* .  \rm *
78  cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../input/* .
79  cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80  ../build/mitgcmuv >& output  ../build/mitgcmuv >& output.txt
81    
82    comparison output is in:
83    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
84    
85    to use matlab to look at the output
86    matlab
87    
88    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
89        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
90        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
91    end
92    
93    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
94    mask=0*heff; mask(find(heff>.001))=1;
95    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
96    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
97    clf
98    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
99    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
100    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
101    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
102    
103    
104    ##########################################################################
105    ##########################################################################
106    # 32*32*6*15, 2-cpu cube sphere on the altices with efc
107    
108    cd MITgcm/verification/global_ocean.cs32x15/code
109    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
110    \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
111    \cp SIZE.h_mpi SIZE.h
112    
113    cd ../build
114    \rm *
115    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
116    make depend
117    make
118    
119    cd ..
120    mkdir run
121    cd run
122    \rm *
123    \cp ../input/* .
124    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
125    mpirun -np 2 ../build/mitgcmuv
126    
127    
128    ##########################################################################
129    ##########################################################################
130    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
131    # requires input files in sudirectories run_template and ncep_rgau
132    # presently residing under orion:/tmp1/dmenem/cube
133    
134    cd MITgcm/verification/global_ocean.cs32x15/code
135    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
136    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
137    \cp SIZE.h_54 SIZE.h
138    \cp packages.conf_hr packages.conf
139    
140    cd ../build
141    \rm *
142    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
143    make depend
144    make
145    
146    cd ..
147    mkdir run
148    cd run
149    \rm *
150    \cp ../input/* .
151    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
152    qsub job_orion
153    
154    
155    ##########################################################################
156    ##########################################################################
157    # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
158    # starting with pickup file from end of 1992
159    # requires input files in sudirectories run_template and ncep_rgau
160    
161    cd MITgcm/verification/global_ocean.cs32x15/code
162    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
163    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
164    \cp packages.conf_hr packages.conf
165    
166    cd ../build
167    \rm *
168    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
169    make depend
170    make
171    
172    cd ..
173    mkdir run
174    cd run
175    \rm *
176    \cp ../input/* .
177    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
178    qsub job_altix93_newIO
179    
180    
181    ##########################################################################
182    ##########################################################################
183    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
184    # requires input files in sudirectories run_template and ncep_rgau
185    # presently residing under orion:/tmp1/dmenem/cube
186    
187    cd MITgcm/verification/global_ocean.cs32x15/code
188    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
189    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
190    \cp SIZE.h_41 SIZE.h
191    \cp packages.conf_hr packages.conf
192    
193    cd ../build
194    \rm *
195    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
196    make depend
197    make
198    
199    cd ..
200    mkdir run
201    cd run
202    \rm *
203    \cp ../input/* .
204    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
205    qsub job_orion41
206    
207    
208    ##########################################################################
209    ##########################################################################
210    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
211    # requires input files in sudirectories run_template and ncep_rgau
212    # presently residing under orion:/tmp1/dmenem/cube
213    
214    cd MITgcm/verification/global_ocean.cs32x15/code
215    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
216    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
217    \cp SIZE.h_50 SIZE.h
218    \cp packages.conf_hr packages.conf
219    
220    cd ../build
221    \rm *
222    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
223    make depend
224    make
225    
226    cd ..
227    mkdir run
228    cd run
229    \rm *
230    \cp ../input/* .
231    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
232    qsub job_orion
233    
234    
235    ##########################################################################
236    ##########################################################################
237    # 510*510*6*50, 216-cpu cube sphere on altix with efc
238    # requires input files in sudirectories run_template and ncep_rgau
239    # these can be obained from lou:/u/menemenl/cube
240    
241    cd MITgcm/verification/global_ocean.cs32x15/code
242    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
243    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
244    \cp SIZE.h_216 SIZE.h
245    \cp packages.conf_hr packages.conf
246    
247    cd ../build
248    \rm *
249    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
250    make depend
251    make
252    
253    cd ..
254    mkdir run
255    cd run
256    \rm *
257    \cp ../input/* .
258    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
259    qsub job_altix
260    
261    
262    ##########################################################################
263    ##########################################################################
264    # matlab script for generating pChkptFreq
265    
266    nTimeSteps=26352;
267    for niter0=216:26352:(26352*12)
268     pChkptFreq=(niter0+nTimeSteps)*1200;
269     day=pChkptFreq/24/60/60;
270     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
271     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
272    end
273    
274    niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
275    niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
276    niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
277    niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
278    niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
279    niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
280    niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
281    niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
282    niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
283    niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
284    niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
285    niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
Legend:
Removed from v.1.2  
changed lines
  Added in v.1.40
  ViewVC Help
Powered by ViewVC 1.1.22