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revision 1.16 by dimitri, Sat Jan 10 18:10:29 2004 UTC revision 1.40 by dimitri, Thu Jul 1 03:52:24 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: January 9, 2004.  Date last tested: March 28, 2004.
3  This is the code used for first multi-year 510x510x6  Code and input used for integrating cube5.
 cube-sphere integration.  
4    
5    
6  ##########################################################################  ##########################################################################
7  ##########################################################################  ##########################################################################
8  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs login ( CVS password: cvsanon )  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co MITgcm_contrib/edge_problem
15  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/input  cvs co MITgcm_code
16  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/results  cvs co MITgcm/verification/global_ocean.cs32x15
17  cvs co -r hrcube_1 MITgcm_code  cvs co MITgcm/verification/testreport
 cvs co -r hrcube_1 MITgcm/verification/global_ocean.cs32x15  
18    
19    
20  ##########################################################################  ##########################################################################
# Line 25  cvs co -r hrcube_1 MITgcm/verification/g Line 23  cvs co -r hrcube_1 MITgcm/verification/g
23    
24  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
25  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
27  \rm mdsio_readfield.F  cd ../build
28    \rm *
 cd ..  
 mkdir build  
 cd build  
29  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
30  make depend  make depend
31  make  make
32    cd ..
33    mkdir run
34    cd run
35    \rm *
36    \cp ../input/* .
37    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
38    ../build/mitgcmuv >& output.txt
39    
40    comparison output is in:
41    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
42    
43    to use matlab to look at the output
44    matlab
45    
46    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
47        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49    end
50    
51    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
52    mask=0*heff; mask(find(heff>.001))=1;
53    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
54    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
55    clf
56    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
57    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
58    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
59    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
60    
61    
62    ##########################################################################
63    ##########################################################################
64    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
65    
66    cd MITgcm/verification/global_ocean.cs32x15/code
67    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68    \cp ../code_alt/code.176t_8x4/* .
69    cd ../build
70    \rm *
71    ../../../tools/genmake2 -mods=../code
72    make depend
73    make
74  cd ..  cd ..
75  mkdir run  mkdir run
76  cd run  cd run
77    \rm *
78  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
79  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
81    
# Line 48  comparison output is in: Line 84  comparison output is in:
84    
85  to use matlab to look at the output  to use matlab to look at the output
86  matlab  matlab
87    
88  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
89      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
90      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
91  end  end
92    
93    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
94    mask=0*heff; mask(find(heff>.001))=1;
95    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
96    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
97    clf
98    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
99    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
100    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
101    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
102    
103    
104  ##########################################################################  ##########################################################################
105  ##########################################################################  ##########################################################################
# Line 60  end Line 107  end
107    
108  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
109  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
110  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
111  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
 \rm mdsio_readfield.F  
112    
113  cd ..  cd ../build
 mkdir build  
 cd build  
114  \rm *  \rm *
115  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
116  make depend  make depend
# Line 78  mkdir run Line 121  mkdir run
121  cd run  cd run
122  \rm *  \rm *
123  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
124  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
125  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
126    
127    
128  ##########################################################################  ##########################################################################
129  ##########################################################################  ##########################################################################
130  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
131  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
132  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
133    
# Line 93  cd MITgcm/verification/global_ocean.cs32 Line 135  cd MITgcm/verification/global_ocean.cs32
135  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
136  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
137  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_54 SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
138  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
139  \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
140  \rm mdsio_readfield.F  cd ../build
141    \rm *
142    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
143    make depend
144    make
145    
146    cd ..
147    mkdir run
148    cd run
149    \rm *
150    \cp ../input/* .
151    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
152    qsub job_orion
153    
154    
155    ##########################################################################
156    ##########################################################################
157    # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
158    # starting with pickup file from end of 1992
159    # requires input files in sudirectories run_template and ncep_rgau
160    
161    cd MITgcm/verification/global_ocean.cs32x15/code
162    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
163    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
164    \cp packages.conf_hr packages.conf
165    
166    cd ../build
167    \rm *
168    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
169    make depend
170    make
171    
172  cd ..  cd ..
173  mkdir build  mkdir run
174  cd build  cd run
175    \rm *
176    \cp ../input/* .
177    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
178    qsub job_altix93_newIO
179    
180    
181    ##########################################################################
182    ##########################################################################
183    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
184    # requires input files in sudirectories run_template and ncep_rgau
185    # presently residing under orion:/tmp1/dmenem/cube
186    
187    cd MITgcm/verification/global_ocean.cs32x15/code
188    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
189    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
190    \cp SIZE.h_41 SIZE.h
191    \cp packages.conf_hr packages.conf
192    
193    cd ../build
194    \rm *
195    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
196    make depend
197    make
198    
199    cd ..
200    mkdir run
201    cd run
202    \rm *
203    \cp ../input/* .
204    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
205    qsub job_orion41
206    
207    
208    ##########################################################################
209    ##########################################################################
210    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
211    # requires input files in sudirectories run_template and ncep_rgau
212    # presently residing under orion:/tmp1/dmenem/cube
213    
214    cd MITgcm/verification/global_ocean.cs32x15/code
215    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
216    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
217    \cp SIZE.h_50 SIZE.h
218    \cp packages.conf_hr packages.conf
219    
220    cd ../build
221  \rm *  \rm *
222  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
223  make depend  make depend
# Line 118  qsub job_orion Line 235  qsub job_orion
235  ##########################################################################  ##########################################################################
236  ##########################################################################  ##########################################################################
237  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 216-cpu cube sphere on altix with efc
238    # requires input files in sudirectories run_template and ncep_rgau
239    # these can be obained from lou:/u/menemenl/cube
240    
241  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
242  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
243  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
244  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
245  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
 \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
 \rm mdsio_readfield.F  
246    
247  cd ..  cd ../build
 mkdir build  
 cd build  
248  \rm *  \rm *
249  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
250  make depend  make depend
# Line 143  cd run Line 257  cd run
257  \cp ../input/* .  \cp ../input/* .
258  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
259  qsub job_altix  qsub job_altix
260    
261    
262    ##########################################################################
263    ##########################################################################
264    # matlab script for generating pChkptFreq
265    
266    nTimeSteps=26352;
267    for niter0=216:26352:(26352*12)
268     pChkptFreq=(niter0+nTimeSteps)*1200;
269     day=pChkptFreq/24/60/60;
270     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
271     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
272    end
273    
274    niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
275    niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
276    niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
277    niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
278    niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
279    niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
280    niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
281    niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
282    niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
283    niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
284    niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
285    niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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