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revision 1.38 by dimitri, Sun Jun 27 21:05:37 2004 UTC revision 1.71 by dimitri, Thu Oct 12 06:09:38 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: March 28, 2004.  
3  Code and input used for integrating cube5.  September 28, 2006: 216-CPU code for cube38
4    
5    September 4, 2006
6    Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10    August 8, 2006
11    216-CPU code and input used for integrating cube37
12    using "June 10, 2006" MITgcm code.
13    
14    for online T/S profile diagnostics all that is needed is
15      profiles_init_fixed
16      profiles_inloop
17    see pkg/ecco/ecco_cost_init_fixed.F
18        pkg/ecco/cost_averagesfields.F
19    
20    
21  ##########################################################################  ##########################################################################
22  ##########################################################################  ##########################################################################
23  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
24    #
25    
26      bash or sh shell:
27        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
28        $ cvs login
29          ( enter the CVS password: "cvsanon" )
30    
31      tcsh or csh shell:
32        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
33        $ cvs login
34          ( enter the CVS password: "cvsanon" )
35    
36  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
37  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
38  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
39  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
 cvs co MITgcm_contrib/edge_problem  
40  cvs co MITgcm_code  cvs co MITgcm_code
41  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
42    cvs co MITgcm/verification/tutorial_held_suarez_cs/input
43    
44    
45  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 58  cd ..
58  mkdir run  mkdir run
59  cd run  cd run
60  \rm *  \rm *
61    \cp ../../tutorial_held_suarez_cs/input/grid* .
62  \cp ../input/* .  \cp ../input/* .
63  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
64  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 42  comparison output is in: Line 69  comparison output is in:
69  to use matlab to look at the output  to use matlab to look at the output
70  matlab  matlab
71    
72  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
73             'QNETtave','FVtave','FUtave','EmPmRtave'}
74      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
75      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
76  end  end
77    
78  heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
79  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
80  uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
81  vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
82  clf  clf
83  subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
84  subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
85  subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
86  subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
87    
88    
89    ##########################################################################
90    ##########################################################################
91    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
92    # requires input files in sudirectories run_template and ncep_rgau
93    # these can be obained from lou:/u/menemenl/cube
94    
95    cd MITgcm/verification/global_ocean.cs32x15/code
96    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
98    \cp SIZE.h_216 SIZE.h
99    \cp packages.conf_hr packages.conf
100    
101    cd ../build
102    \rm *
103    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
104    make depend
105    make -j
106    
107    cd ..
108    mkdir run
109    cd run
110    \rm *
111    \cp ../input/* .
112    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
113    ln -sf ../../../../run_template/* .
114    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
115    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
116    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
117    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
118    \cp ../build/mitgcmuv .
119    qsub job_altix
120    
121    
122  ##########################################################################  ##########################################################################
# Line 74  cd .. Line 135  cd ..
135  mkdir run  mkdir run
136  cd run  cd run
137  \rm *  \rm *
138    \cp ../../tutorial_held_suarez_cs/input/grid* .
139  \cp ../input/* .  \cp ../input/* .
140  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
141  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
142    
 comparison output is in:  
 ../../../../MITgcm_contrib/high_res_cube/results/output.txt  
   
 to use matlab to look at the output  
 matlab  
   
 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  
     tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);  
     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause  
 end  
   
 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  
 mask=0*heff; mask(find(heff>.001))=1;  
 uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  
 vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  
 clf  
 subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  
 subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  
 subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  
 subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  
   
143    
144  ##########################################################################  ##########################################################################
145  ##########################################################################  ##########################################################################
146  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
147    
148  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
149  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 111  cd MITgcm/verification/global_ocean.cs32 Line 152  cd MITgcm/verification/global_ocean.cs32
152    
153  cd ../build  cd ../build
154  \rm *  \rm *
155  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
156  make depend  make depend
157  make  make -j
158    
159  cd ..  cd ..
160  mkdir run  mkdir run
161  cd run  cd run
162  \rm *  \rm *
163    \cp ../../tutorial_held_suarez_cs/input/grid* .
164  \cp ../input/* .  \cp ../input/* .
165  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
166  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 126  mpirun -np 2 ../build/mitgcmuv Line 168  mpirun -np 2 ../build/mitgcmuv
168    
169  ##########################################################################  ##########################################################################
170  ##########################################################################  ##########################################################################
171  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
172    # starting with pickup file from end of 1992
173  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
 # presently residing under orion:/tmp1/dmenem/cube  
174    
175  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
176  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
177  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
 \cp SIZE.h_54 SIZE.h  
178  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
179    
180  cd ../build  cd ../build
181  \rm *  \rm *
182  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
183  make depend  make depend
184  make  make -j
185    
186  cd ..  cd ..
187  mkdir run  mkdir run
# Line 148  cd run Line 189  cd run
189  \rm *  \rm *
190  \cp ../input/* .  \cp ../input/* .
191  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
192  qsub job_orion  qsub job_altix92_54t
193    
194    
195  ##########################################################################  ##########################################################################
196  ##########################################################################  ##########################################################################
197  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
198  # starting with pickup file from end of 1992  # uses s1500t_17x51 configuration
 # requires input files in sudirectories run_template and ncep_rgau  
 # presently residing under orion:/tmp1/dmenem/cube  
199    
200  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
201  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
202  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
203    \cp SIZE.h_150 SIZE.h
204  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
205    
206  cd ../build  cd ../build
207  \rm *  \rm *
208  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
209  make depend  make depend
210  make  make -j
211    
212  cd ..  cd ..
213  mkdir run  mkdir run
# Line 175  cd run Line 215  cd run
215  \rm *  \rm *
216  \cp ../input/* .  \cp ../input/* .
217  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
218  qsub job_altix93_newIO  ln -sf ../../../../run_template/* .
219    \rm pickup*
220    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
221    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
222    \cp ../build/mitgcmuv mitgcmuv150
223    qsub job_altix150
224    
225    
226  ##########################################################################  ##########################################################################
227  ##########################################################################  ##########################################################################
228  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
229  # requires input files in sudirectories run_template and ncep_rgau  # uses s1500t_17x51 configuration
230  # presently residing under orion:/tmp1/dmenem/cube  # example for running on c17-c20 using arrayd
231    
232  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
233  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
234  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
235  \cp SIZE.h_41 SIZE.h  \cp SIZE.h_375 SIZE.h
236  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
237    
238  cd ../build  cd ../build
239  \rm *  \rm *
240  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
241  make depend  make depend
242  make  make -j
243    
244  cd ..  cd ..
245  mkdir run  mkdir run
# Line 202  cd run Line 247  cd run
247  \rm *  \rm *
248  \cp ../input/* .  \cp ../input/* .
249  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
250  qsub job_orion41  ln -sf ../../../../run_template/* .
251    \rm pickup*
252    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
253    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
254    \cp ../build/mitgcmuv .
255    job_c20_375cpu < /dev/null >&! output.run &
256    
257    
258  ##########################################################################  ##########################################################################
259  ##########################################################################  ##########################################################################
260  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
261    # uses s1500t_17x51 configuration
262    # example for running on c17-c20 using arrayd
263    
264    cd MITgcm/verification/global_ocean.cs32x15/code
265    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
266    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
267    \cp SIZE.h_375 SIZE.h
268    \cp packages.conf_hr packages.conf
269    
270    cd ../build
271    \rm *
272    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
273    make depend
274    make -j
275    
276    cd ..
277    mkdir run
278    cd run
279    \rm *
280    \cp ../input/* .
281    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
282    ln -sf ../../../../run_template/* .
283    \rm pickup*
284    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
285    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
286    \cp ../build/mitgcmuv .
287    job_c20_375cpu < /dev/null >&! output.run &
288    
289    
290    ##########################################################################
291    ##########################################################################
292    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
293    # uses s1500t_17x51 configuration
294    # example for running on c17-c20 using arrayd
295    
296    cd MITgcm/verification/global_ocean.cs32x15/code
297    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
298    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
299    \cp SIZE.h_500 SIZE.h
300    \cp packages.conf_hr packages.conf
301    
302    cd ../build
303    \rm *
304    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
305    make depend
306    make -j
307    
308    cd ..
309    mkdir run
310    cd run
311    \rm *
312    \cp ../input/* .
313    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
314    ln -sf ../../../../run_template/* .
315    \rm pickup*
316    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
317    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
318    \cp ../build/mitgcmuv .
319    job_c19_500cpu < /dev/null >&! output.run &
320    
321    
322    ##########################################################################
323    ##########################################################################
324    # 510*510*6*50, 216-cpu cube sphere on cosmos
325    
326    cd MITgcm/verification/global_ocean.cs32x15/code
327    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
328    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
329    \cp SIZE.h_216 SIZE.h
330    \cp packages.conf_hr packages.conf
331    
332    module unload latest_intel80
333    module unload mpich-gm-intel80
334    module load latest_intel81
335    module load mpich-gm-intel81
336    
337    cd ../build
338    \rm *
339    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
340    make depend
341    make -j
342    
343    cd ..
344    mkdir run
345    cd run
346    \rm *
347    \cp ../input/* .
348    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
349    ln -sf ../../../../run_template/* .
350    \rm pickup*
351    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
352    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
353    \cp ../build/mitgcmuv .
354    bsub < job_cosmos
355    
356    
357    ##########################################################################
358    ##########################################################################
359    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
360  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
361  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
362    
363  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
364  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
365  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
366  \cp SIZE.h_50 SIZE.h  \cp SIZE.h_54 SIZE.h
367  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
368    
369  cd ../build  cd ../build
370  \rm *  \rm *
371  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
372  make depend  make depend
373  make  make -j
374    
375  cd ..  cd ..
376  mkdir run  mkdir run
# Line 234  qsub job_orion Line 383  qsub job_orion
383    
384  ##########################################################################  ##########################################################################
385  ##########################################################################  ##########################################################################
386  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
387  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
388  # these can be obained from lou:/u/menemenl/cube  # presently residing under orion:/tmp1/dmenem/cube
389    
390  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
391  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
392  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
393  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_41 SIZE.h
394  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
395    
396  cd ../build  cd ../build
397  \rm *  \rm *
398  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
399  make depend  make depend
400  make  make -j
401    
402  cd ..  cd ..
403  mkdir run  mkdir run
# Line 256  cd run Line 405  cd run
405  \rm *  \rm *
406  \cp ../input/* .  \cp ../input/* .
407  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
408  qsub job_altix  qsub job_orion41
409    
410    
411  ##########################################################################  ##########################################################################
412  ##########################################################################  ##########################################################################
413  # matlab script for generating pChkptFreq  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
414    # requires input files in sudirectories run_template and ncep_rgau
415    # presently residing under orion:/tmp1/dmenem/cube
416    
417  nTimeSteps=26352;  cd MITgcm/verification/global_ocean.cs32x15/code
418  for niter0=216:26352:(26352*12)  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
419   pChkptFreq=(niter0+nTimeSteps)*1200;  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
420   day=pChkptFreq/24/60/60;  \cp SIZE.h_50 SIZE.h
421   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...  \cp packages.conf_hr packages.conf
422   datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])  
423  end  cd ../build
424    \rm *
425    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
426    make depend
427    make -j
428    
429  niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600  cd ..
430  niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000  mkdir run
431  niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400  cd run
432  niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800  \rm *
433  niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200  \cp ../input/* .
434  niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
435  niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000  qsub job_orion
 niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400  
 niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  
 niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  
 niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  
 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  
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