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revision 1.38 by dimitri, Sun Jun 27 21:05:37 2004 UTC revision 1.69 by dimitri, Tue Oct 10 23:27:04 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: March 28, 2004.  
3  Code and input used for integrating cube5.  September 28, 2006: 216-CPU code for cube38
4    
5    September 4, 2006
6    Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10    August 8, 2006
11    216-CPU code and input used for integrating cube37
12    using "June 10, 2006" MITgcm code.
13    
14    for online T/S profile diagnostics all that is needed is
15      profiles_init_fixed
16      profiles_inloop
17    see pkg/ecco/ecco_cost_init_fixed.F
18        pkg/ecco/cost_averagesfields.F
19    
20    
21  ##########################################################################  ##########################################################################
22  ##########################################################################  ##########################################################################
23  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
24    #
25    
26      bash or sh shell:
27        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
28        $ cvs login
29          ( enter the CVS password: "cvsanon" )
30    
31      tcsh or csh shell:
32        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
33        $ cvs login
34          ( enter the CVS password: "cvsanon" )
35    
36  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
37  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
38  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
39  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
 cvs co MITgcm_contrib/edge_problem  
40  cvs co MITgcm_code  cvs co MITgcm_code
41  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
42    cvs co MITgcm/verification/tutorial_held_suarez_cs/input
43    
44    
45  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 58  cd ..
58  mkdir run  mkdir run
59  cd run  cd run
60  \rm *  \rm *
61    \cp ../../tutorial_held_suarez_cs/input/grid* .
62  \cp ../input/* .  \cp ../input/* .
63  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
64  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 42  comparison output is in: Line 69  comparison output is in:
69  to use matlab to look at the output  to use matlab to look at the output
70  matlab  matlab
71    
72  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
73             'QNETtave','FVtave','FUtave','EmPmRtave'}
74      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
75      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
76  end  end
77    
78  heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
79  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
80  uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
81  vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
82  clf  clf
83  subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
84  subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
85  subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
86  subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
87    
88    
89    ##########################################################################
90    ##########################################################################
91    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
92    # requires input files in sudirectories run_template and ncep_rgau
93    # these can be obained from lou:/u/menemenl/cube
94    
95    cd MITgcm/verification/global_ocean.cs32x15/code
96    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
98    \cp SIZE.h_216 SIZE.h
99    \cp packages.conf_hr packages.conf
100    
101    cd ../build
102    \rm *
103    ../../../tools/genmake2 -mods=../code -of
104    ../../../tools/build_options/linux_ia\
105    64_ifort+mpi_altix_nas
106    make depend
107    make -j
108    
109    cd ..
110    mkdir run
111    cd run
112    \rm *
113    \cp ../input/* .
114    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
115    ln -sf ../../../../run_template/* .
116    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
117    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
118    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
119    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
120    \cp ../build/mitgcmuv .
121    qsub job_altix
122    
123    
124  ##########################################################################  ##########################################################################
# Line 74  cd .. Line 137  cd ..
137  mkdir run  mkdir run
138  cd run  cd run
139  \rm *  \rm *
140    \cp ../../tutorial_held_suarez_cs/input/grid* .
141  \cp ../input/* .  \cp ../input/* .
142  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
143  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
144    
 comparison output is in:  
 ../../../../MITgcm_contrib/high_res_cube/results/output.txt  
   
 to use matlab to look at the output  
 matlab  
   
 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  
     tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);  
     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause  
 end  
   
 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  
 mask=0*heff; mask(find(heff>.001))=1;  
 uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  
 vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  
 clf  
 subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  
 subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  
 subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  
 subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  
   
145    
146  ##########################################################################  ##########################################################################
147  ##########################################################################  ##########################################################################
148  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
149    
150  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
151  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 111  cd MITgcm/verification/global_ocean.cs32 Line 154  cd MITgcm/verification/global_ocean.cs32
154    
155  cd ../build  cd ../build
156  \rm *  \rm *
157  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
158  make depend  make depend
159  make  make -j
160    
161  cd ..  cd ..
162  mkdir run  mkdir run
163  cd run  cd run
164  \rm *  \rm *
165    \cp ../../tutorial_held_suarez_cs/input/grid* .
166  \cp ../input/* .  \cp ../input/* .
167  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
168  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 126  mpirun -np 2 ../build/mitgcmuv Line 170  mpirun -np 2 ../build/mitgcmuv
170    
171  ##########################################################################  ##########################################################################
172  ##########################################################################  ##########################################################################
173  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
174    # starting with pickup file from end of 1992
175  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
 # presently residing under orion:/tmp1/dmenem/cube  
176    
177  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
178  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
179  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
 \cp SIZE.h_54 SIZE.h  
180  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
181    
182  cd ../build  cd ../build
183  \rm *  \rm *
184  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
185  make depend  make depend
186  make  make -j
187    
188  cd ..  cd ..
189  mkdir run  mkdir run
# Line 148  cd run Line 191  cd run
191  \rm *  \rm *
192  \cp ../input/* .  \cp ../input/* .
193  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
194  qsub job_orion  qsub job_altix92_54t
195    
196    
197  ##########################################################################  ##########################################################################
198  ##########################################################################  ##########################################################################
199  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
200  # starting with pickup file from end of 1992  # uses s1500t_17x51 configuration
 # requires input files in sudirectories run_template and ncep_rgau  
 # presently residing under orion:/tmp1/dmenem/cube  
201    
202  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
203  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
204  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
205    \cp SIZE.h_150 SIZE.h
206  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
207    
208  cd ../build  cd ../build
209  \rm *  \rm *
210  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
211  make depend  make depend
212  make  make -j
213    
214  cd ..  cd ..
215  mkdir run  mkdir run
# Line 175  cd run Line 217  cd run
217  \rm *  \rm *
218  \cp ../input/* .  \cp ../input/* .
219  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
220  qsub job_altix93_newIO  ln -sf ../../../../run_template/* .
221    \rm pickup*
222    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
223    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
224    \cp ../build/mitgcmuv mitgcmuv150
225    qsub job_altix150
226    
227    
228  ##########################################################################  ##########################################################################
229  ##########################################################################  ##########################################################################
230  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
231  # requires input files in sudirectories run_template and ncep_rgau  # uses s1500t_17x51 configuration
232  # presently residing under orion:/tmp1/dmenem/cube  # example for running on c17-c20 using arrayd
233    
234  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
235  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
236  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
237  \cp SIZE.h_41 SIZE.h  \cp SIZE.h_375 SIZE.h
238  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
239    
240  cd ../build  cd ../build
241  \rm *  \rm *
242  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
243  make depend  make depend
244  make  make -j
245    
246  cd ..  cd ..
247  mkdir run  mkdir run
# Line 202  cd run Line 249  cd run
249  \rm *  \rm *
250  \cp ../input/* .  \cp ../input/* .
251  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
252  qsub job_orion41  ln -sf ../../../../run_template/* .
253    \rm pickup*
254    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
255    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
256    \cp ../build/mitgcmuv .
257    job_c20_375cpu < /dev/null >&! output.run &
258    
259    
260  ##########################################################################  ##########################################################################
261  ##########################################################################  ##########################################################################
262  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
263    # uses s1500t_17x51 configuration
264    # example for running on c17-c20 using arrayd
265    
266    cd MITgcm/verification/global_ocean.cs32x15/code
267    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
268    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
269    \cp SIZE.h_375 SIZE.h
270    \cp packages.conf_hr packages.conf
271    
272    cd ../build
273    \rm *
274    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
275    make depend
276    make -j
277    
278    cd ..
279    mkdir run
280    cd run
281    \rm *
282    \cp ../input/* .
283    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
284    ln -sf ../../../../run_template/* .
285    \rm pickup*
286    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
287    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
288    \cp ../build/mitgcmuv .
289    job_c20_375cpu < /dev/null >&! output.run &
290    
291    
292    ##########################################################################
293    ##########################################################################
294    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
295    # uses s1500t_17x51 configuration
296    # example for running on c17-c20 using arrayd
297    
298    cd MITgcm/verification/global_ocean.cs32x15/code
299    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
300    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
301    \cp SIZE.h_500 SIZE.h
302    \cp packages.conf_hr packages.conf
303    
304    cd ../build
305    \rm *
306    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
307    make depend
308    make -j
309    
310    cd ..
311    mkdir run
312    cd run
313    \rm *
314    \cp ../input/* .
315    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
316    ln -sf ../../../../run_template/* .
317    \rm pickup*
318    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
319    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
320    \cp ../build/mitgcmuv .
321    job_c19_500cpu < /dev/null >&! output.run &
322    
323    
324    ##########################################################################
325    ##########################################################################
326    # 510*510*6*50, 216-cpu cube sphere on cosmos
327    
328    cd MITgcm/verification/global_ocean.cs32x15/code
329    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
330    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
331    \cp SIZE.h_216 SIZE.h
332    \cp packages.conf_hr packages.conf
333    
334    module unload latest_intel80
335    module unload mpich-gm-intel80
336    module load latest_intel81
337    module load mpich-gm-intel81
338    
339    cd ../build
340    \rm *
341    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
342    make depend
343    make -j
344    
345    cd ..
346    mkdir run
347    cd run
348    \rm *
349    \cp ../input/* .
350    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
351    ln -sf ../../../../run_template/* .
352    \rm pickup*
353    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
354    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
355    \cp ../build/mitgcmuv .
356    bsub < job_cosmos
357    
358    
359    ##########################################################################
360    ##########################################################################
361    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
362  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
363  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
364    
365  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
366  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
367  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
368  \cp SIZE.h_50 SIZE.h  \cp SIZE.h_54 SIZE.h
369  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
370    
371  cd ../build  cd ../build
372  \rm *  \rm *
373  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
374  make depend  make depend
375  make  make -j
376    
377  cd ..  cd ..
378  mkdir run  mkdir run
# Line 234  qsub job_orion Line 385  qsub job_orion
385    
386  ##########################################################################  ##########################################################################
387  ##########################################################################  ##########################################################################
388  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
389  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
390  # these can be obained from lou:/u/menemenl/cube  # presently residing under orion:/tmp1/dmenem/cube
391    
392  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
393  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
394  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
395  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_41 SIZE.h
396  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
397    
398  cd ../build  cd ../build
399  \rm *  \rm *
400  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
401  make depend  make depend
402  make  make -j
403    
404  cd ..  cd ..
405  mkdir run  mkdir run
# Line 256  cd run Line 407  cd run
407  \rm *  \rm *
408  \cp ../input/* .  \cp ../input/* .
409  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
410  qsub job_altix  qsub job_orion41
411    
412    
413  ##########################################################################  ##########################################################################
414  ##########################################################################  ##########################################################################
415  # matlab script for generating pChkptFreq  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
416    # requires input files in sudirectories run_template and ncep_rgau
417    # presently residing under orion:/tmp1/dmenem/cube
418    
419  nTimeSteps=26352;  cd MITgcm/verification/global_ocean.cs32x15/code
420  for niter0=216:26352:(26352*12)  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
421   pChkptFreq=(niter0+nTimeSteps)*1200;  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
422   day=pChkptFreq/24/60/60;  \cp SIZE.h_50 SIZE.h
423   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...  \cp packages.conf_hr packages.conf
424   datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])  
425  end  cd ../build
426    \rm *
427    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
428    make depend
429    make -j
430    
431  niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600  cd ..
432  niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000  mkdir run
433  niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400  cd run
434  niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800  \rm *
435  niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200  \cp ../input/* .
436  niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
437  niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000  qsub job_orion
 niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400  
 niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  
 niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  
 niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  
 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  
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