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revision 1.21 by dimitri, Sun Jan 25 16:29:41 2004 UTC revision 1.38 by dimitri, Sun Jun 27 21:05:37 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: January 24, 2004.  Date last tested: March 28, 2004.
3  This is the code used for cube2, the second 1992-2002 510x510x6  Code and input used for integrating cube5.
 cube-sphere integration.  
4    
5    
6  ##########################################################################  ##########################################################################
7  ##########################################################################  ##########################################################################
8  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs login ( CVS password: cvsanon )  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co MITgcm_contrib/edge_problem
15  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/input  cvs co MITgcm_code
16  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/results  cvs co MITgcm/verification/global_ocean.cs32x15
 cvs co -r hrcube_2 MITgcm_code  
 cvs co -r hrcube_2 MITgcm/verification/global_ocean.cs32x15  
17    
18    
19  ##########################################################################  ##########################################################################
# Line 25  cvs co -r hrcube_2 MITgcm/verification/g Line 22  cvs co -r hrcube_2 MITgcm/verification/g
22    
23  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
24  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
26    cd ../build
27  cd ..  \rm *
 mkdir build  
 cd build  
28  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
29  make depend  make depend
30  make  make
31    cd ..
32    mkdir run
33    cd run
34    \rm *
35    \cp ../input/* .
36    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37    ../build/mitgcmuv >& output.txt
38    
39    comparison output is in:
40    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
41    
42    to use matlab to look at the output
43    matlab
44    
45    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
46        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48    end
49    
50    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
51    mask=0*heff; mask(find(heff>.001))=1;
52    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
53    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
54    clf
55    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
56    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
57    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
58    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
59    
60    
61    ##########################################################################
62    ##########################################################################
63    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
64    
65    cd MITgcm/verification/global_ocean.cs32x15/code
66    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
67    \cp ../code_alt/code.176t_8x4/* .
68    cd ../build
69    \rm *
70    ../../../tools/genmake2 -mods=../code
71    make depend
72    make
73  cd ..  cd ..
74  mkdir run  mkdir run
75  cd run  cd run
76    \rm *
77  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
78  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
80    
# Line 70  subplot(224), mypcolor(vice(:,:,6)'), co Line 106  subplot(224), mypcolor(vice(:,:,6)'), co
106    
107  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
108  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
109  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
110  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
111    
112  cd ..  cd ../build
 mkdir build  
 cd build  
113  \rm *  \rm *
114  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
115  make depend  make depend
# Line 87  mkdir run Line 120  mkdir run
120  cd run  cd run
121  \rm *  \rm *
122  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
123  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
124  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
125    
126    
127  ##########################################################################  ##########################################################################
128  ##########################################################################  ##########################################################################
129  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
130  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
131  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
132    
# Line 102  cd MITgcm/verification/global_ocean.cs32 Line 134  cd MITgcm/verification/global_ocean.cs32
134  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
136  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_54 SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
137  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
138  \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
139    cd ../build
140    \rm *
141    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
142    make depend
143    make
144    
145    cd ..
146    mkdir run
147    cd run
148    \rm *
149    \cp ../input/* .
150    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
151    qsub job_orion
152    
153    
154    ##########################################################################
155    ##########################################################################
156    # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
157    # starting with pickup file from end of 1992
158    # requires input files in sudirectories run_template and ncep_rgau
159    # presently residing under orion:/tmp1/dmenem/cube
160    
161    cd MITgcm/verification/global_ocean.cs32x15/code
162    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
163    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
164    \cp packages.conf_hr packages.conf
165    
166    cd ../build
167    \rm *
168    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
169    make depend
170    make
171    
172  cd ..  cd ..
173  mkdir build  mkdir run
174  cd build  cd run
175    \rm *
176    \cp ../input/* .
177    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
178    qsub job_altix93_newIO
179    
180    
181    ##########################################################################
182    ##########################################################################
183    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
184    # requires input files in sudirectories run_template and ncep_rgau
185    # presently residing under orion:/tmp1/dmenem/cube
186    
187    cd MITgcm/verification/global_ocean.cs32x15/code
188    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
189    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
190    \cp SIZE.h_41 SIZE.h
191    \cp packages.conf_hr packages.conf
192    
193    cd ../build
194    \rm *
195    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
196    make depend
197    make
198    
199    cd ..
200    mkdir run
201    cd run
202    \rm *
203    \cp ../input/* .
204    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
205    qsub job_orion41
206    
207    
208    ##########################################################################
209    ##########################################################################
210    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
211    # requires input files in sudirectories run_template and ncep_rgau
212    # presently residing under orion:/tmp1/dmenem/cube
213    
214    cd MITgcm/verification/global_ocean.cs32x15/code
215    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
216    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
217    \cp SIZE.h_50 SIZE.h
218    \cp packages.conf_hr packages.conf
219    
220    cd ../build
221  \rm *  \rm *
222  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
223  make depend  make depend
# Line 133  cd MITgcm/verification/global_ocean.cs32 Line 242  cd MITgcm/verification/global_ocean.cs32
242  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
243  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
244  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
245  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
 \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
246    
247  cd ..  cd ../build
 mkdir build  
 cd build  
248  \rm *  \rm *
249  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
250  make depend  make depend
# Line 159  qsub job_altix Line 264  qsub job_altix
264  # matlab script for generating pChkptFreq  # matlab script for generating pChkptFreq
265    
266  nTimeSteps=26352;  nTimeSteps=26352;
267  for niter0=216:26352:(26352*11)  for niter0=216:26352:(26352*12)
268   pChkptFreq=(niter0+nTimeSteps)*1200;   pChkptFreq=(niter0+nTimeSteps)*1200;
269   day=pChkptFreq/24/60/60;   day=pChkptFreq/24/60/60;
270   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
# Line 177  niter0 = 184680, day = 2931, 10-Jan-2000 Line 282  niter0 = 184680, day = 2931, 10-Jan-2000
282  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
283  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
284  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
285    niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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