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revision 1.9 by dimitri, Sun Dec 14 02:06:15 2003 UTC revision 1.29 by dimitri, Tue Feb 17 22:35:44 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: December 11, 2003.  Date last tested: February 13, 2004.
3    This is the code used for cube4, the third 1992-2002 510x510x6
4    cube-sphere integration.
5    
6    
7  ##########################################################################  ##########################################################################
8  ##########################################################################  ##########################################################################
9  # 32*32*6*15, 1-cpu cube sphere  # getting the code from anonymous CVS server
10    
11  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
12  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
13  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  cvs co -r hrcube4 MITgcm_contrib/high_res_cube/README_ice
14  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  cvs co -r hrcube4 MITgcm_contrib/high_res_cube/code-mods
15  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co -r hrcube4 MITgcm_contrib/high_res_cube/matlab-grid-converter
16  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  cvs co -r hrcube4 MITgcm_contrib/high_res_cube/input
17  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  cvs co -r hrcube4 MITgcm_contrib/high_res_cube/results
18  cvs co -r checkpoint52d_pre MITgcm_code  cvs co -r hrcube4 MITgcm_code
19  cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  cvs co -r hrcube4 MITgcm/verification/global_ocean.cs32x15
20    
21    
22    ##########################################################################
23    ##########################################################################
24    # 32*32*6*15, 1-cpu cube sphere
25    
26  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
27  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
28  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
 \rm mdsio_readfield.F  
29    
30  cd ..  cd ../build
31  mkdir build  ../../../tools/genmake2 -mods=../code
 cd build  
 ../code/genmake2 -mods=../code  
32  make depend  make depend
33  make  make
34    
35  cd ..  cd ..
36  mkdir run  mkdir run
37  cd run  cd run
 \cp ../inp_thsice/* .  
38  \cp ../input/* .  \cp ../input/* .
39  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
40  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
# Line 42  comparison output is in: Line 45  comparison output is in:
45    
46  to use matlab to look at the output  to use matlab to look at the output
47  matlab  matlab
48    
49  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
50      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
51      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
52  end  end
53    
54    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
55    mask=0*heff; mask(find(heff>.001))=1;
56    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
57    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
58    clf
59    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
60    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
61    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
62    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
63    
64    
65  ##########################################################################  ##########################################################################
66  ##########################################################################  ##########################################################################
67  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 2-cpu cube sphere on the altices with efc
68    
 setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
   
69  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
70  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
71  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
72  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
 \rm mdsio_readfield.F  
73    
74  cd ..  cd ../build
75  mkdir build  \rm *
76  cd build  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
 ../code/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  
77  make depend  make depend
78  make  make
79    
80  cd ..  cd ..
81  mkdir run  mkdir run
82  cd run  cd run
83  \cp ../inp_thsice/* .  \rm *
84  \cp ../input/* .  \cp ../input/* .
85  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
86  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
# Line 89  mpirun -np 2 ../build/mitgcmuv Line 90  mpirun -np 2 ../build/mitgcmuv
90  ##########################################################################  ##########################################################################
91  ##########################################################################  ##########################################################################
92  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-cpu cube sphere on the altices with efc
93    # requires input files in sudirectories run_template and ncep_rgau
94  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  # presently residing under orion:/tmp1/dmenem/cube
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
95    
96  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
97  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
98  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
99  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_54 SIZE.h
100  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp packages.conf_hr packages.conf
 \rm mdsio_readfield.F  
101    
102  cd ..  cd ../build
103  mkdir build  \rm *
104  cd build  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
 ../code/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  
105  make depend  make depend
106  make  make
107    
108  cd ..  cd ..
109  mkdir run  mkdir run
110  cd run  cd run
111  \cp ../inp_thsice/* .  \rm *
112  \cp ../input/* .  \cp ../input/* .
113  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
 \cp data_hr data  
 \ln -sf ../../../../run_template/tile00* .  
 \ln -sf ../../../../run_template/LEV* .  
 \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  
114  qsub job_orion  qsub job_orion
115    
116    
117  ##########################################################################  ##########################################################################
118  ##########################################################################  ##########################################################################
119  # 510*510*6*50, 216-cpu cube sphere on the altices with efc  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
120    # requires input files in sudirectories run_template and ncep_rgau
121    # presently residing under orion:/tmp1/dmenem/cube
122    
123  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cd MITgcm/verification/global_ocean.cs32x15/code
124  cvs login ( CVS password: cvsanon )  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
125  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
126  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  \cp SIZE.h_41 SIZE.h
127  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  \cp packages.conf_hr packages.conf
128  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
129  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  cd ../build
130  cvs co -r checkpoint52d_pre MITgcm_code  \rm *
131  cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
132    make depend
133    make
134    
135    cd ..
136    mkdir run
137    cd run
138    \rm *
139    \cp ../input/* .
140    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
141    qsub job_orion41
142    
143    
144    ##########################################################################
145    ##########################################################################
146    # 510*510*6*50, 216-cpu cube sphere on altix with efc
147    # requires input files in sudirectories run_template and ncep_rgau
148    # these can be obained from lou:/u/menemenl/cube
149    
150  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
151  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
152  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
153  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
154  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp packages.conf_hr packages.conf
 \rm mdsio_readfield.F  
155    
156  cd ..  cd ../build
157  mkdir build  \rm *
158  cd build  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  
159  make depend  make depend
160  make  make
161    
162  cd ..  cd ..
163  mkdir run  mkdir run
164  cd run  cd run
165  \cp ../inp_thsice/* .  \rm *
166  \cp ../input/* .  \cp ../input/* .
167  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
168  \cp data_hr data  qsub job_altix
169  \cp data.pkg_hr data.pkg  
170  \ln -sf ../../../../run_template/tile00* .  
171  \ln -sf ../../../../run_template/LEV* .  ##########################################################################
172  \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  ##########################################################################
173  qsub job_orion  # matlab script for generating pChkptFreq
174    
175    nTimeSteps=26352;
176    for niter0=216:26352:(26352*11)
177     pChkptFreq=(niter0+nTimeSteps)*1200;
178     day=pChkptFreq/24/60/60;
179     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
180     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
181    end
182    
183    niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
184    niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
185    niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
186    niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
187    niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
188    niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
189    niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
190    niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
191    niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
192    niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
193    niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
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