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revision 1.28 by dimitri, Fri Feb 13 08:35:48 2004 UTC revision 1.50 by dimitri, Tue Jan 18 18:33:15 2005 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: February 13, 2004.  Date last tested: July 9, 2004.
3  This is the code used for cube4, the third 1992-2002 510x510x6  Code and input used for integrating cube9.
 cube-sphere integration.  
4    
5    
6  ##########################################################################  ##########################################################################
7  ##########################################################################  ##########################################################################
8  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs login ( CVS password: cvsanon )  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co -r hrcube4 MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co -r hrcube4 MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co -r hrcube4 MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co MITgcm_code
15  cvs co -r hrcube4 MITgcm_contrib/high_res_cube/input  cvs co MITgcm/verification/global_ocean.cs32x15
16  cvs co -r hrcube4 MITgcm_contrib/high_res_cube/results  cvs co MITgcm/verification/testreport
 cvs co -r hrcube4 MITgcm_code  
 cvs co -r hrcube4 MITgcm/verification/global_ocean.cs32x15  
17    
18    
19  ##########################################################################  ##########################################################################
# Line 25  cvs co -r hrcube4 MITgcm/verification/gl Line 22  cvs co -r hrcube4 MITgcm/verification/gl
22    
23  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
24  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
   
26  cd ../build  cd ../build
27    \rm *
28  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
29  make depend  make depend
30  make  make
31    cd ..
32    mkdir run
33    cd run
34    \rm *
35    \cp ../input/* .
36    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37    ../build/mitgcmuv >& output.txt
38    
39    comparison output is in:
40    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
41    
42    to use matlab to look at the output
43    matlab
44    
45    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
46        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48    end
49    
50    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
51    mask=0*heff; mask(find(heff>.001))=1;
52    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
53    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
54    clf
55    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
56    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
57    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
58    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
59    
60    
61    ##########################################################################
62    ##########################################################################
63    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
64    
65    cd MITgcm/verification/global_ocean.cs32x15/code
66    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
67    \cp ../code_alt/code.176t_8x4/* .
68    cd ../build
69    \rm *
70    ../../../tools/genmake2 -mods=../code
71    make depend
72    make
73  cd ..  cd ..
74  mkdir run  mkdir run
75  cd run  cd run
76    \rm *
77  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
78  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
80    
# Line 68  subplot(224), mypcolor(vice(:,:,6)'), co Line 106  subplot(224), mypcolor(vice(:,:,6)'), co
106    
107  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
108  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
109  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
110  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
111    
112  cd ../build  cd ../build
113  \rm *  \rm *
114  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
115  make depend  make depend
116  make  make -j
117    
118  cd ..  cd ..
119  mkdir run  mkdir run
120  cd run  cd run
121  \rm *  \rm *
122  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
123  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
124  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
125    
126    
127  ##########################################################################  ##########################################################################
128  ##########################################################################  ##########################################################################
129  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
130    # starting with pickup file from end of 1992
131    # requires input files in sudirectories run_template and ncep_rgau
132    
133    cd MITgcm/verification/global_ocean.cs32x15/code
134    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
136    \cp packages.conf_hr packages.conf
137    
138    cd ../build
139    \rm *
140    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
141    make depend
142    make -j
143    
144    cd ..
145    mkdir run
146    cd run
147    \rm *
148    \cp ../input/* .
149    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
150    qsub job_altix92_54t
151    
152    
153    ##########################################################################
154    ##########################################################################
155    # 510*510*6*50, 216-cpu cube sphere on altix with ifort
156    # requires input files in sudirectories run_template and ncep_rgau
157    # these can be obained from lou:/u/menemenl/cube
158    
159    cd MITgcm/verification/global_ocean.cs32x15/code
160    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
161    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
162    \cp SIZE.h_216 SIZE.h
163    \cp packages.conf_hr packages.conf
164    
165    cd ../build
166    \rm *
167    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
168    make depend
169    make -j 4
170    
171    cd ..
172    mkdir run
173    cd run
174    \rm *
175    \cp ../input/* .
176    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
177    ln -sf ../../../../run_template/* .
178    \rm pickup*
179    ln -sf ../../../../run_template/pickup.0000316440.cube20 pickup.0000000216.data
180    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube20 pickup_seaice.0000000216.data
181    \cp ../build/mitgcmuv .
182    qsub job_altix92
183    
184    
185    
186    
187    
188    
189    
190    
191    
192    
193    
194    
195    
196    
197    
198    
199    
200    
201    ##########################################################################
202    ##########################################################################
203    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
204  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
205  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
206    
# Line 101  cd MITgcm/verification/global_ocean.cs32 Line 212  cd MITgcm/verification/global_ocean.cs32
212    
213  cd ../build  cd ../build
214  \rm *  \rm *
215  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
216  make depend  make depend
217  make  make -j
218    
219  cd ..  cd ..
220  mkdir run  mkdir run
# Line 128  cd MITgcm/verification/global_ocean.cs32 Line 239  cd MITgcm/verification/global_ocean.cs32
239    
240  cd ../build  cd ../build
241  \rm *  \rm *
242  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
243  make depend  make depend
244  make  make -j
245    
246  cd ..  cd ..
247  mkdir run  mkdir run
# Line 143  qsub job_orion41 Line 254  qsub job_orion41
254    
255  ##########################################################################  ##########################################################################
256  ##########################################################################  ##########################################################################
257  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
258  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
259  # these can be obained from lou:/u/menemenl/cube  # presently residing under orion:/tmp1/dmenem/cube
260    
261  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
262  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
263  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
264  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_50 SIZE.h
265  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
266    
267  cd ../build  cd ../build
268  \rm *  \rm *
269  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
270  make depend  make depend
271  make  make -j
272    
273  cd ..  cd ..
274  mkdir run  mkdir run
# Line 165  cd run Line 276  cd run
276  \rm *  \rm *
277  \cp ../input/* .  \cp ../input/* .
278  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
279  qsub -l ignore_ded=1 job_altix  qsub job_orion
280    
281    
282  ##########################################################################  ##########################################################################
# Line 173  qsub -l ignore_ded=1 job_altix Line 284  qsub -l ignore_ded=1 job_altix
284  # matlab script for generating pChkptFreq  # matlab script for generating pChkptFreq
285    
286  nTimeSteps=26352;  nTimeSteps=26352;
287  for niter0=216:26352:(26352*11)  for niter0=216:26352:(26352*12)
288   pChkptFreq=(niter0+nTimeSteps)*1200;   pChkptFreq=(niter0+nTimeSteps)*1200;
289   day=pChkptFreq/24/60/60;   day=pChkptFreq/24/60/60;
290   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
# Line 191  niter0 = 184680, day = 2931, 10-Jan-2000 Line 302  niter0 = 184680, day = 2931, 10-Jan-2000
302  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
303  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
304  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
305    niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
306    
307    
308    
309    
310    
311    
312    #!/bin/csh
313    \cp data.pkg_hr data.pkg
314    \cp data.seaice_hr data.seaice
315    \cp data.exf_clim_hr data.exf_clim
316    
317    \cp data_hr92 data
318    ./modpickup
319    \cp data.exf_hr92 data.exf
320    /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv
321    mkdir out.1992
322    \mv STDOUT.0000 *.data pickup*.meta out.1992
323    \cp data* out.1992
324    \rm STD* *.meta
325    
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