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revision 1.20 by dimitri, Sun Jan 25 06:33:20 2004 UTC revision 1.36 by dimitri, Sun Mar 28 09:28:21 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: January 24, 2004.  Date last tested: March 28, 2004.
3  This is the code used for cube2 the second 1992-2002 510x510x6  Code and input used for integrating cube5.
 cube-sphere integration.  
4    
5    
6  ##########################################################################  ##########################################################################
# Line 10  cube-sphere integration. Line 9  cube-sphere integration.
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
11  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
12  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/README_ice  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice
13  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/code-mods  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods
14  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input
15  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/input  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results
16  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/results  cvs co -r hrcube5 MITgcm_code
17  cvs co -r hrcube_2 MITgcm_code  cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15
 cvs co -r hrcube_2 MITgcm/verification/global_ocean.cs32x15  
18    
19    
20  ##########################################################################  ##########################################################################
# Line 25  cvs co -r hrcube_2 MITgcm/verification/g Line 23  cvs co -r hrcube_2 MITgcm/verification/g
23    
24  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
25  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
27    
28  cd ..  cd ../build
 mkdir build  
 cd build  
29  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
30  make depend  make depend
31  make  make
# Line 38  cd .. Line 34  cd ..
34  mkdir run  mkdir run
35  cd run  cd run
36  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
37  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
38  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
39    
# Line 70  subplot(224), mypcolor(vice(:,:,6)'), co Line 65  subplot(224), mypcolor(vice(:,:,6)'), co
65    
66  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
67  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
69  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
70    
71  cd ..  cd ../build
 mkdir build  
 cd build  
72  \rm *  \rm *
73  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
74  make depend  make depend
# Line 87  mkdir run Line 79  mkdir run
79  cd run  cd run
80  \rm *  \rm *
81  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
82  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
83  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
84    
85    
86  ##########################################################################  ##########################################################################
87  ##########################################################################  ##########################################################################
88  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
89  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
90  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
91    
# Line 102  cd MITgcm/verification/global_ocean.cs32 Line 93  cd MITgcm/verification/global_ocean.cs32
93  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
94  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
95  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_54 SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
96  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
97  \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
98    cd ../build
99    \rm *
100    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
101    make depend
102    make
103    
104  cd ..  cd ..
105  mkdir build  mkdir run
106  cd build  cd run
107    \rm *
108    \cp ../input/* .
109    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
110    qsub job_orion
111    
112    
113    ##########################################################################
114    ##########################################################################
115    # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
116    # starting with pickup file from end of 1992
117    # requires input files in sudirectories run_template and ncep_rgau
118    # presently residing under orion:/tmp1/dmenem/cube
119    
120    cd MITgcm/verification/global_ocean.cs32x15/code
121    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
122    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
123    \cp packages.conf_hr packages.conf
124    
125    cd ../build
126    \rm *
127    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
128    make depend
129    make
130    
131    cd ..
132    mkdir run
133    cd run
134    \rm *
135    \cp ../input/* .
136    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
137    qsub job_altix93_newIO
138    
139    
140    ##########################################################################
141    ##########################################################################
142    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
143    # requires input files in sudirectories run_template and ncep_rgau
144    # presently residing under orion:/tmp1/dmenem/cube
145    
146    cd MITgcm/verification/global_ocean.cs32x15/code
147    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
148    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
149    \cp SIZE.h_41 SIZE.h
150    \cp packages.conf_hr packages.conf
151    
152    cd ../build
153    \rm *
154    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
155    make depend
156    make
157    
158    cd ..
159    mkdir run
160    cd run
161    \rm *
162    \cp ../input/* .
163    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
164    qsub job_orion41
165    
166    
167    ##########################################################################
168    ##########################################################################
169    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
170    # requires input files in sudirectories run_template and ncep_rgau
171    # presently residing under orion:/tmp1/dmenem/cube
172    
173    cd MITgcm/verification/global_ocean.cs32x15/code
174    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
175    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
176    \cp SIZE.h_50 SIZE.h
177    \cp packages.conf_hr packages.conf
178    
179    cd ../build
180  \rm *  \rm *
181  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
182  make depend  make depend
# Line 133  cd MITgcm/verification/global_ocean.cs32 Line 201  cd MITgcm/verification/global_ocean.cs32
201  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
202  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
203  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
204  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
 \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
205    
206  cd ..  cd ../build
 mkdir build  
 cd build  
207  \rm *  \rm *
208  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
209  make depend  make depend
# Line 159  qsub job_altix Line 223  qsub job_altix
223  # matlab script for generating pChkptFreq  # matlab script for generating pChkptFreq
224    
225  nTimeSteps=26352;  nTimeSteps=26352;
226  for niter0=216:26352:(26352*11)  for niter0=216:26352:(26352*12)
227   pChkptFreq=(niter0+nTimeSteps)*1200;   pChkptFreq=(niter0+nTimeSteps)*1200;
228   day=pChkptFreq/24/60/60;   day=pChkptFreq/24/60/60;
229   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
# Line 177  niter0 = 184680, day = 2931, 10-Jan-2000 Line 241  niter0 = 184680, day = 2931, 10-Jan-2000
241  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
242  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
243  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
244    niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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