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revision 1.14 by dimitri, Sat Jan 10 17:32:30 2004 UTC revision 1.20 by dimitri, Sun Jan 25 06:33:20 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: January 9, 2004.  Date last tested: January 24, 2004.
3  This is the code used for first multi-year 510x510x6  This is the code used for cube2 the second 1992-2002 510x510x6
4  cube-sphere integration.  cube-sphere integration.
5    
6    
# Line 10  cube-sphere integration. Line 10  cube-sphere integration.
10    
11  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
12  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
13  cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/README_ice  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/README_ice
14  cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/code-mods  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/code-mods
15  cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/matlab-grid-converter
16  cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/input  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/input
17  cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/results  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/results
18  cvs co -r hr_cube1 MITgcm_code  cvs co -r hrcube_2 MITgcm_code
19  cvs co -r hr_cube1 MITgcm/verification/global_ocean.cs32x15  cvs co -r hrcube_2 MITgcm/verification/global_ocean.cs32x15
20    
21    
22  ##########################################################################  ##########################################################################
# Line 26  cvs co -r hr_cube1 MITgcm/verification/g Line 26  cvs co -r hr_cube1 MITgcm/verification/g
26  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
27  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
28  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
 \rm mdsio_readfield.F  
29    
30  cd ..  cd ..
31  mkdir build  mkdir build
# Line 48  comparison output is in: Line 47  comparison output is in:
47    
48  to use matlab to look at the output  to use matlab to look at the output
49  matlab  matlab
50    
51  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
52      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
53      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
54  end  end
55    
56    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
57    mask=0*heff; mask(find(heff>.001))=1;
58    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
59    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
60    clf
61    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
62    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
63    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
64    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
65    
66    
67  ##########################################################################  ##########################################################################
68  ##########################################################################  ##########################################################################
# Line 63  cd MITgcm/verification/global_ocean.cs32 Line 73  cd MITgcm/verification/global_ocean.cs32
73  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
74  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
75  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
 \rm mdsio_readfield.F  
76    
77  cd ..  cd ..
78  mkdir build  mkdir build
# Line 96  cd MITgcm/verification/global_ocean.cs32 Line 105  cd MITgcm/verification/global_ocean.cs32
105  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
106  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
107  \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
 \rm mdsio_readfield.F  
108    
109  cd ..  cd ..
110  mkdir build  mkdir build
# Line 118  qsub job_orion Line 126  qsub job_orion
126  ##########################################################################  ##########################################################################
127  ##########################################################################  ##########################################################################
128  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 216-cpu cube sphere on altix with efc
129    # requires input files in sudirectories run_template and ncep_rgau
130  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  # these can be obained from lou:/u/menemenl/cube
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
131    
132  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
133  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 136  cd MITgcm/verification/global_ocean.cs32 Line 136  cd MITgcm/verification/global_ocean.cs32
136  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
137  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
138  \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
 \rm mdsio_readfield.F  
139    
140  cd ..  cd ..
141  mkdir build  mkdir build
142  cd build  cd build
143    \rm *
144  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
145  make depend  make depend
146  make  make
# Line 148  make Line 148  make
148  cd ..  cd ..
149  mkdir run  mkdir run
150  cd run  cd run
151    \rm *
152    \cp ../input/* .
153    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
154  qsub job_altix  qsub job_altix
155    
156    
157    ##########################################################################
158    ##########################################################################
159    # matlab script for generating pChkptFreq
160    
161    nTimeSteps=26352;
162    for niter0=216:26352:(26352*11)
163     pChkptFreq=(niter0+nTimeSteps)*1200;
164     day=pChkptFreq/24/60/60;
165     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
166     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
167    end
168    
169    niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
170    niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
171    niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
172    niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
173    niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
174    niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
175    niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
176    niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
177    niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
178    niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
179    niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
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