1 |
Instructions for setting up a cube-sphere integration with sea-ice. |
Instructions for setting up a cube-sphere integration with sea-ice. |
2 |
Date last tested: January 9, 2004. |
|
3 |
This is the code used for first multi-year 510x510x6 |
================= |
4 |
cube-sphere integration. |
UPDATES |
5 |
|
|
6 |
|
December 5, 2006: 216-CPU code for cube46 |
7 |
|
Changed diagnostics to accomodate JMCs latest and some |
8 |
|
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h |
9 |
|
to speed up code. |
10 |
|
|
11 |
|
November 7, 2006: 216-CPU code for cube43 |
12 |
|
Bug fixes in growth.F routine and new set of diagnostics |
13 |
|
|
14 |
|
October 15, 2006: 216-CPU code for cube40 |
15 |
|
|
16 |
|
September 28, 2006: 216-CPU code for cube38 |
17 |
|
|
18 |
|
September 4, 2006 |
19 |
|
Modified 32*32*6*15 experiments to use grid_cs32.* files from |
20 |
|
verification/tutorial_held_suarez_cs/input instead of |
21 |
|
tile* files from verification/global_ocean.cs32x15/input |
22 |
|
|
23 |
|
August 8, 2006: 216-CPU code and input used for cube37 |
24 |
|
using "June 10, 2006" MITgcm code. |
25 |
|
|
26 |
|
for online T/S profile diagnostics all that is needed is |
27 |
|
profiles_init_fixed |
28 |
|
profiles_inloop |
29 |
|
see pkg/ecco/ecco_cost_init_fixed.F |
30 |
|
pkg/ecco/cost_averagesfields.F |
31 |
|
|
32 |
|
|
33 |
########################################################################## |
########################################################################## |
34 |
########################################################################## |
########################################################################## |
35 |
# getting the code from anonymous CVS server |
# getting the code from anonymous CVS server |
36 |
|
# |
37 |
|
|
38 |
|
bash or sh shell: |
39 |
|
$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
40 |
|
$ cvs login |
41 |
|
( enter the CVS password: "cvsanon" ) |
42 |
|
|
43 |
setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack |
tcsh or csh shell: |
44 |
cvs login ( CVS password: cvsanon ) |
$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
45 |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/README_ice |
$ cvs login |
46 |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/code-mods |
( enter the CVS password: "cvsanon" ) |
47 |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/matlab-grid-converter |
|
48 |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/input |
cvs co MITgcm_contrib/high_res_cube/README_ice |
49 |
cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/results |
cvs co MITgcm_contrib/high_res_cube/code-mods |
50 |
cvs co -r hrcube_1 MITgcm_code |
cvs co MITgcm_contrib/high_res_cube/input |
51 |
cvs co -r hrcube_1 MITgcm/verification/global_ocean.cs32x15 |
cvs co MITgcm_contrib/high_res_cube/results |
52 |
|
cvs co MITgcm_code |
53 |
|
cvs co MITgcm/verification/global_ocean.cs32x15 |
54 |
|
cvs co MITgcm/verification/tutorial_held_suarez_cs/input |
55 |
|
|
56 |
|
|
57 |
########################################################################## |
########################################################################## |
58 |
########################################################################## |
########################################################################## |
59 |
# 32*32*6*15, 1-cpu cube sphere |
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics |
60 |
|
# requires input files in sudirectories run_template and ncep_rgau |
61 |
|
# these can be obained from lou:/u/menemenl/cube |
62 |
|
|
63 |
cd MITgcm/verification/global_ocean.cs32x15/code |
cd MITgcm/verification/global_ocean.cs32x15/code |
64 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
65 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
66 |
|
\cp SIZE.h_216 SIZE.h |
67 |
|
\cp packages.conf_hr packages.conf |
68 |
|
|
69 |
|
cd ../build |
70 |
|
\rm * |
71 |
|
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas |
72 |
|
make depend |
73 |
|
make -j |
74 |
|
|
75 |
cd .. |
cd .. |
76 |
mkdir build |
mkdir run |
77 |
cd build |
cd run |
78 |
|
\rm * |
79 |
|
\cp ../input/* . |
80 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
81 |
|
ln -sf ../../../../run_template/* . |
82 |
|
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr* |
83 |
|
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t |
84 |
|
ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216 |
85 |
|
ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216 |
86 |
|
\cp ../build/mitgcmuv . |
87 |
|
qsub job_altix |
88 |
|
|
89 |
|
|
90 |
|
########################################################################## |
91 |
|
########################################################################## |
92 |
|
# 32*32*6*15, 1-cpu cube sphere |
93 |
|
|
94 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
95 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
96 |
|
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
97 |
|
cd ../build |
98 |
|
\rm * |
99 |
../../../tools/genmake2 -mods=../code |
../../../tools/genmake2 -mods=../code |
100 |
make depend |
make depend |
101 |
make |
make |
|
|
|
102 |
cd .. |
cd .. |
103 |
mkdir run |
mkdir run |
104 |
cd run |
cd run |
105 |
|
\rm * |
106 |
|
\cp ../../tutorial_held_suarez_cs/input/grid* . |
107 |
\cp ../input/* . |
\cp ../input/* . |
|
\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* . |
|
108 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
109 |
../build/mitgcmuv >& output.txt |
../build/mitgcmuv >& output.txt |
110 |
|
|
114 |
to use matlab to look at the output |
to use matlab to look at the output |
115 |
matlab |
matlab |
116 |
|
|
117 |
for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'} |
for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ... |
118 |
tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]); |
'surForcT','oceTAUX','oceTAUY','surForcS'} |
119 |
|
tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]); |
120 |
cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
121 |
end |
end |
122 |
|
|
123 |
heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]); |
heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]); |
124 |
mask=0*heff; mask(find(heff>.001))=1; |
mask=0*heff; mask(find(heff>.001))=1; |
125 |
uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]); |
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]); |
126 |
vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]); |
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]); |
127 |
clf |
clf |
128 |
subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3') |
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3') |
129 |
subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6') |
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6') |
130 |
subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3') |
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3') |
131 |
subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6') |
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6') |
132 |
|
|
133 |
|
|
134 |
|
########################################################################## |
135 |
|
########################################################################## |
136 |
|
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment |
137 |
|
|
138 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
139 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
140 |
|
\cp ../code_alt/code.176t_8x4/* . |
141 |
|
cd ../build |
142 |
|
\rm * |
143 |
|
../../../tools/genmake2 -mods=../code |
144 |
|
make depend |
145 |
|
make |
146 |
|
cd .. |
147 |
|
mkdir run |
148 |
|
cd run |
149 |
|
\rm * |
150 |
|
\cp ../../tutorial_held_suarez_cs/input/grid* . |
151 |
|
\cp ../input/* . |
152 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
153 |
|
../build/mitgcmuv >& output.txt |
154 |
|
|
155 |
|
|
156 |
########################################################################## |
########################################################################## |
157 |
########################################################################## |
########################################################################## |
158 |
# 32*32*6*15, 2-cpu cube sphere on the altices with efc |
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort |
159 |
|
|
160 |
cd MITgcm/verification/global_ocean.cs32x15/code |
cd MITgcm/verification/global_ocean.cs32x15/code |
161 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
162 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* . |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
163 |
\cp SIZE.h_mpi SIZE.h |
\cp SIZE.h_mpi SIZE.h |
|
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
|
164 |
|
|
165 |
cd .. |
cd ../build |
|
mkdir build |
|
|
cd build |
|
166 |
\rm * |
\rm * |
167 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
168 |
make depend |
make depend |
169 |
make |
make -j |
170 |
|
|
171 |
cd .. |
cd .. |
172 |
mkdir run |
mkdir run |
173 |
cd run |
cd run |
174 |
\rm * |
\rm * |
175 |
|
\cp ../../tutorial_held_suarez_cs/input/grid* . |
176 |
\cp ../input/* . |
\cp ../input/* . |
|
\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* . |
|
177 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
178 |
mpirun -np 2 ../build/mitgcmuv |
mpirun -np 2 ../build/mitgcmuv |
179 |
|
|
180 |
|
|
181 |
########################################################################## |
########################################################################## |
182 |
########################################################################## |
########################################################################## |
183 |
# 510*510*6*50, 54-cpu cube sphere on the altices with efc |
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc |
184 |
|
# starting with pickup file from end of 1992 |
185 |
|
# requires input files in sudirectories run_template and ncep_rgau |
186 |
|
|
187 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
188 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
189 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* . |
190 |
|
\cp packages.conf_hr packages.conf |
191 |
|
|
192 |
|
cd ../build |
193 |
|
\rm * |
194 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
195 |
|
make depend |
196 |
|
make -j |
197 |
|
|
198 |
|
cd .. |
199 |
|
mkdir run |
200 |
|
cd run |
201 |
|
\rm * |
202 |
|
\cp ../input/* . |
203 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
204 |
|
qsub job_altix92_54t |
205 |
|
|
206 |
|
|
207 |
|
########################################################################## |
208 |
|
########################################################################## |
209 |
|
# 510*510*6*50, 1500-tile, 150-cpu, excludes land |
210 |
|
# uses s1500t_17x51 configuration |
211 |
|
|
212 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
213 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
214 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
215 |
|
\cp SIZE.h_150 SIZE.h |
216 |
|
\cp packages.conf_hr packages.conf |
217 |
|
|
218 |
|
cd ../build |
219 |
|
\rm * |
220 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
221 |
|
make depend |
222 |
|
make -j |
223 |
|
|
224 |
|
cd .. |
225 |
|
mkdir run |
226 |
|
cd run |
227 |
|
\rm * |
228 |
|
\cp ../input/* . |
229 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
230 |
|
ln -sf ../../../../run_template/* . |
231 |
|
\rm pickup* |
232 |
|
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
233 |
|
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
234 |
|
\cp ../build/mitgcmuv mitgcmuv150 |
235 |
|
qsub job_altix150 |
236 |
|
|
237 |
|
|
238 |
|
########################################################################## |
239 |
|
########################################################################## |
240 |
|
# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
241 |
|
# uses s1500t_17x51 configuration |
242 |
|
# example for running on c17-c20 using arrayd |
243 |
|
|
244 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
245 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
246 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
247 |
|
\cp SIZE.h_375 SIZE.h |
248 |
|
\cp packages.conf_hr packages.conf |
249 |
|
|
250 |
|
cd ../build |
251 |
|
\rm * |
252 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
253 |
|
make depend |
254 |
|
make -j |
255 |
|
|
256 |
|
cd .. |
257 |
|
mkdir run |
258 |
|
cd run |
259 |
|
\rm * |
260 |
|
\cp ../input/* . |
261 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
262 |
|
ln -sf ../../../../run_template/* . |
263 |
|
\rm pickup* |
264 |
|
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
265 |
|
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
266 |
|
\cp ../build/mitgcmuv . |
267 |
|
job_c20_375cpu < /dev/null >&! output.run & |
268 |
|
|
269 |
|
|
270 |
|
########################################################################## |
271 |
|
########################################################################## |
272 |
|
# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
273 |
|
# uses s1500t_17x51 configuration |
274 |
|
# example for running on c17-c20 using arrayd |
275 |
|
|
276 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
277 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
278 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
279 |
|
\cp SIZE.h_375 SIZE.h |
280 |
|
\cp packages.conf_hr packages.conf |
281 |
|
|
282 |
|
cd ../build |
283 |
|
\rm * |
284 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
285 |
|
make depend |
286 |
|
make -j |
287 |
|
|
288 |
|
cd .. |
289 |
|
mkdir run |
290 |
|
cd run |
291 |
|
\rm * |
292 |
|
\cp ../input/* . |
293 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
294 |
|
ln -sf ../../../../run_template/* . |
295 |
|
\rm pickup* |
296 |
|
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
297 |
|
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
298 |
|
\cp ../build/mitgcmuv . |
299 |
|
job_c20_375cpu < /dev/null >&! output.run & |
300 |
|
|
301 |
|
|
302 |
|
########################################################################## |
303 |
|
########################################################################## |
304 |
|
# 510*510*6*50, 1500-tile, 500-cpu, excludes land |
305 |
|
# uses s1500t_17x51 configuration |
306 |
|
# example for running on c17-c20 using arrayd |
307 |
|
|
308 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
309 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
310 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
311 |
|
\cp SIZE.h_500 SIZE.h |
312 |
|
\cp packages.conf_hr packages.conf |
313 |
|
|
314 |
|
cd ../build |
315 |
|
\rm * |
316 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
317 |
|
make depend |
318 |
|
make -j |
319 |
|
|
320 |
|
cd .. |
321 |
|
mkdir run |
322 |
|
cd run |
323 |
|
\rm * |
324 |
|
\cp ../input/* . |
325 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
326 |
|
ln -sf ../../../../run_template/* . |
327 |
|
\rm pickup* |
328 |
|
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
329 |
|
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
330 |
|
\cp ../build/mitgcmuv . |
331 |
|
job_c19_500cpu < /dev/null >&! output.run & |
332 |
|
|
333 |
|
|
334 |
|
########################################################################## |
335 |
|
########################################################################## |
336 |
|
# 510*510*6*50, 216-cpu cube sphere on cosmos |
337 |
|
|
338 |
|
cd MITgcm/verification/global_ocean.cs32x15/code |
339 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
340 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
341 |
|
\cp SIZE.h_216 SIZE.h |
342 |
|
\cp packages.conf_hr packages.conf |
343 |
|
|
344 |
|
module unload latest_intel80 |
345 |
|
module unload mpich-gm-intel80 |
346 |
|
module load latest_intel81 |
347 |
|
module load mpich-gm-intel81 |
348 |
|
|
349 |
|
cd ../build |
350 |
|
\rm * |
351 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos |
352 |
|
make depend |
353 |
|
make -j |
354 |
|
|
355 |
|
cd .. |
356 |
|
mkdir run |
357 |
|
cd run |
358 |
|
\rm * |
359 |
|
\cp ../input/* . |
360 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
361 |
|
ln -sf ../../../../run_template/* . |
362 |
|
\rm pickup* |
363 |
|
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
364 |
|
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
365 |
|
\cp ../build/mitgcmuv . |
366 |
|
bsub < job_cosmos |
367 |
|
|
368 |
|
|
369 |
|
########################################################################## |
370 |
|
########################################################################## |
371 |
|
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc |
372 |
# requires input files in sudirectories run_template and ncep_rgau |
# requires input files in sudirectories run_template and ncep_rgau |
373 |
# presently residing under orion:/tmp1/dmenem/cube |
# presently residing under orion:/tmp1/dmenem/cube |
374 |
|
|
376 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
377 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
378 |
\cp SIZE.h_54 SIZE.h |
\cp SIZE.h_54 SIZE.h |
|
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
|
379 |
\cp packages.conf_hr packages.conf |
\cp packages.conf_hr packages.conf |
|
\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F |
|
380 |
|
|
381 |
cd .. |
cd ../build |
|
mkdir build |
|
|
cd build |
|
382 |
\rm * |
\rm * |
383 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
384 |
make depend |
make depend |
385 |
make |
make -j |
386 |
|
|
387 |
cd .. |
cd .. |
388 |
mkdir run |
mkdir run |
390 |
\rm * |
\rm * |
391 |
\cp ../input/* . |
\cp ../input/* . |
392 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
|
\cm data.exf_clim_hr data.exf_clim |
|
393 |
qsub job_orion |
qsub job_orion |
394 |
|
|
395 |
|
|
396 |
########################################################################## |
########################################################################## |
397 |
########################################################################## |
########################################################################## |
398 |
# 510*510*6*50, 216-cpu cube sphere on altix with efc |
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc |
399 |
# requires input files in sudirectories run_template and ncep_rgau |
# requires input files in sudirectories run_template and ncep_rgau |
400 |
# these can be obained from lou:/u/menemenl/cube |
# presently residing under orion:/tmp1/dmenem/cube |
401 |
|
|
402 |
cd MITgcm/verification/global_ocean.cs32x15/code |
cd MITgcm/verification/global_ocean.cs32x15/code |
403 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
404 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* . |
405 |
\cp SIZE.h_216 SIZE.h |
\cp SIZE.h_41 SIZE.h |
|
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
|
406 |
\cp packages.conf_hr packages.conf |
\cp packages.conf_hr packages.conf |
|
\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F |
|
407 |
|
|
408 |
cd .. |
cd ../build |
|
mkdir build |
|
|
cd build |
|
409 |
\rm * |
\rm * |
410 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
411 |
make depend |
make depend |
412 |
make |
make -j |
413 |
|
|
414 |
cd .. |
cd .. |
415 |
mkdir run |
mkdir run |
417 |
\rm * |
\rm * |
418 |
\cp ../input/* . |
\cp ../input/* . |
419 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
420 |
\cm data.exf_clim_hr data.exf_clim |
qsub job_orion41 |
|
qsub job_altix |
|
421 |
|
|
422 |
|
|
423 |
########################################################################## |
########################################################################## |
424 |
########################################################################## |
########################################################################## |
425 |
# matlab script for generating pChkptFreq |
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc |
426 |
|
# requires input files in sudirectories run_template and ncep_rgau |
427 |
|
# presently residing under orion:/tmp1/dmenem/cube |
428 |
|
|
429 |
nTimeSteps=26352; |
cd MITgcm/verification/global_ocean.cs32x15/code |
430 |
for niter0=216:26352:(26352*11) |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
431 |
pChkptFreq=(niter0+nTimeSteps)*1200; |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
432 |
day=pChkptFreq/24/60/60; |
\cp SIZE.h_50 SIZE.h |
433 |
disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ... |
\cp packages.conf_hr packages.conf |
|
datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)]) |
|
|
end |
|
434 |
|
|
435 |
niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600 |
cd ../build |
436 |
niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000 |
\rm * |
437 |
niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
438 |
niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800 |
make depend |
439 |
niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200 |
make -j |
440 |
niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600 |
|
441 |
niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000 |
cd .. |
442 |
niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400 |
mkdir run |
443 |
niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800 |
cd run |
444 |
niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200 |
\rm * |
445 |
niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600 |
\cp ../input/* . |
446 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
447 |
|
qsub job_orion |