1 |
Instructions for setting up a cube-sphere integration with sea-ice. |
Instructions for setting up a cube-sphere integration with sea-ice. |
2 |
Date last tested: January 9, 2004. |
Date last updated: February 17, 2005 |
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This is the code used for first multi-year 510x510x6 |
Code and input used for integrating cube22. |
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cube-sphere integration. |
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########################################################################## |
########################################################################## |
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########################################################################## |
########################################################################## |
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# getting the code from anonymous CVS server |
# getting the code from anonymous CVS server |
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setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack |
cvs co MITgcm_contrib/high_res_cube/README_ice |
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cvs login ( CVS password: cvsanon ) |
cvs co MITgcm_contrib/high_res_cube/code-mods |
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cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/README_ice |
cvs co MITgcm_contrib/high_res_cube/input |
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cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/code-mods |
cvs co MITgcm_contrib/high_res_cube/results |
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cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/matlab-grid-converter |
cvs co MITgcm_code |
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cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/input |
cvs co MITgcm/verification/global_ocean.cs32x15 |
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cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/results |
cvs co MITgcm/verification/testreport |
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cvs co -r hrcube_1 MITgcm_code |
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cvs co -r hrcube_1 MITgcm/verification/global_ocean.cs32x15 |
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########################################################################## |
########################################################################## |
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cd MITgcm/verification/global_ocean.cs32x15/code |
cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* . |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
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cd ../build |
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cd .. |
\rm * |
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mkdir build |
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cd build |
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../../../tools/genmake2 -mods=../code |
../../../tools/genmake2 -mods=../code |
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make depend |
make depend |
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make |
make |
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cd .. |
cd .. |
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mkdir run |
mkdir run |
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cd run |
cd run |
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\rm * |
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\cp ../input/* . |
\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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../build/mitgcmuv >& output.txt |
../build/mitgcmuv >& output.txt |
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to use matlab to look at the output |
to use matlab to look at the output |
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matlab |
matlab |
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for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'} |
for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ... |
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'QNETtave','FVtave','FUtave','EmPmRtave'} |
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tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]); |
tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]); |
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cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
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end |
end |
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heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]); |
heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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mask=0*heff; mask(find(heff>.001))=1; |
mask=0*heff; mask(find(heff>.001))=1; |
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uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]); |
uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]); |
vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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clf |
clf |
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subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3') |
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3') |
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subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6') |
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6') |
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subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3') |
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3') |
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subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6') |
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6') |
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########################################################################## |
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########################################################################## |
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# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../code_alt/code.176t_8x4/* . |
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code |
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make depend |
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make |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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../build/mitgcmuv >& output.txt |
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########################################################################## |
########################################################################## |
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########################################################################## |
########################################################################## |
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# 32*32*6*15, 2-cpu cube sphere on the altices with efc |
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort |
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cd MITgcm/verification/global_ocean.cs32x15/code |
cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* . |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
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\cp SIZE.h_mpi SIZE.h |
\cp SIZE.h_mpi SIZE.h |
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\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
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cd .. |
cd ../build |
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mkdir build |
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cd build |
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\rm * |
\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
make depend |
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make |
make -j |
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cd .. |
cd .. |
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mkdir run |
mkdir run |
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cd run |
cd run |
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\rm * |
\rm * |
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\cp ../input/* . |
\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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mpirun -np 2 ../build/mitgcmuv |
mpirun -np 2 ../build/mitgcmuv |
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########################################################################## |
########################################################################## |
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########################################################################## |
########################################################################## |
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# 510*510*6*50, 54-cpu cube sphere on the altices with efc |
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc |
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# starting with pickup file from end of 1992 |
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# requires input files in sudirectories run_template and ncep_rgau |
# requires input files in sudirectories run_template and ncep_rgau |
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# presently residing under orion:/tmp1/dmenem/cube |
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cd MITgcm/verification/global_ocean.cs32x15/code |
cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* . |
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\cp SIZE.h_54 SIZE.h |
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\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
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\cp packages.conf_hr packages.conf |
\cp packages.conf_hr packages.conf |
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\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F |
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cd .. |
cd ../build |
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mkdir build |
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cd build |
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\rm * |
\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
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make depend |
make depend |
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make |
make -j |
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cd .. |
cd .. |
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mkdir run |
mkdir run |
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\rm * |
\rm * |
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\cp ../input/* . |
\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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\cm data.exf_clim_hr data.exf_clim |
qsub job_altix92_54t |
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qsub job_orion |
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########################################################################## |
########################################################################## |
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########################################################################## |
########################################################################## |
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# 510*510*6*50, 216-cpu cube sphere on altix with efc |
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics |
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# requires input files in sudirectories run_template and ncep_rgau |
# requires input files in sudirectories run_template and ncep_rgau |
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# these can be obained from lou:/u/menemenl/cube |
# these can be obained from lou:/u/menemenl/cube |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
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\cp SIZE.h_216 SIZE.h |
\cp SIZE.h_216 SIZE.h |
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\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h |
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\cp packages.conf_hr packages.conf |
\cp packages.conf_hr packages.conf |
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\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F |
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../../../run_template/* . |
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\rm pickup* |
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ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data |
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\cp ../build/mitgcmuv . |
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qsub job_altix |
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########################################################################## |
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########################################################################## |
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# 510*510*6*50, 1500-tile, 150-cpu, excludes land |
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# uses s1500t_17x51 configuration |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
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\cp SIZE.h_150 SIZE.h |
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\cp packages.conf_hr packages.conf |
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../../../run_template/* . |
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\rm pickup* |
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ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data |
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\cp ../build/mitgcmuv mitgcmuv150 |
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qsub job_altix150 |
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########################################################################## |
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########################################################################## |
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# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
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# uses s1500t_17x51 configuration |
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# example for running on c17-c20 using arrayd |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
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\cp SIZE.h_375 SIZE.h |
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\cp packages.conf_hr packages.conf |
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd .. |
cd .. |
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mkdir build |
mkdir run |
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cd build |
cd run |
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\rm * |
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\cp ../input/* . |
231 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../../../run_template/* . |
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\rm pickup* |
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ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data |
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\cp ../build/mitgcmuv . |
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job_c20_375cpu < /dev/null >&! output.run & |
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########################################################################## |
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########################################################################## |
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# 510*510*6*50, 1500-tile, 500-cpu, excludes land |
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# uses s1500t_17x51 configuration |
244 |
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# example for running on c17-c20 using arrayd |
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246 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
247 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
248 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
249 |
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\cp SIZE.h_500 SIZE.h |
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\cp packages.conf_hr packages.conf |
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
263 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
264 |
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ln -sf ../../../../run_template/* . |
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\rm pickup* |
266 |
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ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data |
268 |
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\cp ../build/mitgcmuv . |
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job_c19_500cpu < /dev/null >&! output.run & |
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########################################################################## |
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########################################################################## |
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# 510*510*6*50, 216-cpu cube sphere on cosmos |
278 |
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279 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
280 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
281 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
282 |
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\cp SIZE.h_216 SIZE.h |
283 |
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\cp packages.conf_hr packages.conf |
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285 |
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module unload latest_intel80 |
286 |
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module unload mpich-gm-intel80 |
287 |
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module load latest_intel81 |
288 |
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module load mpich-gm-intel81 |
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cd ../build |
291 |
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\rm * |
292 |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos |
293 |
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make depend |
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make -j |
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cd .. |
297 |
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mkdir run |
298 |
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cd run |
299 |
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\rm * |
300 |
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\cp ../input/* . |
301 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
302 |
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ln -sf ../../../../run_template/* . |
303 |
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\rm pickup* |
304 |
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ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data |
305 |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data |
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\cp ../build/mitgcmuv . |
307 |
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bsub < job_cosmos |
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########################################################################## |
329 |
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########################################################################## |
330 |
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# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc |
331 |
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# requires input files in sudirectories run_template and ncep_rgau |
332 |
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# presently residing under orion:/tmp1/dmenem/cube |
333 |
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334 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
335 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
336 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
337 |
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\cp SIZE.h_54 SIZE.h |
338 |
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\cp packages.conf_hr packages.conf |
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cd ../build |
341 |
\rm * |
\rm * |
342 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
343 |
make depend |
make depend |
344 |
make |
make -j |
345 |
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346 |
cd .. |
cd .. |
347 |
mkdir run |
mkdir run |
349 |
\rm * |
\rm * |
350 |
\cp ../input/* . |
\cp ../input/* . |
351 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
352 |
\cm data.exf_clim_hr data.exf_clim |
qsub job_orion |
|
qsub job_altix |
|
353 |
|
|
354 |
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|
355 |
########################################################################## |
########################################################################## |
356 |
########################################################################## |
########################################################################## |
357 |
# matlab script for generating pChkptFreq |
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc |
358 |
|
# requires input files in sudirectories run_template and ncep_rgau |
359 |
|
# presently residing under orion:/tmp1/dmenem/cube |
360 |
|
|
361 |
nTimeSteps=26352; |
cd MITgcm/verification/global_ocean.cs32x15/code |
362 |
for niter0=216:26352:(26352*11) |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
363 |
pChkptFreq=(niter0+nTimeSteps)*1200; |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* . |
364 |
day=pChkptFreq/24/60/60; |
\cp SIZE.h_41 SIZE.h |
365 |
disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ... |
\cp packages.conf_hr packages.conf |
366 |
datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)]) |
|
367 |
end |
cd ../build |
368 |
|
\rm * |
369 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
370 |
|
make depend |
371 |
|
make -j |
372 |
|
|
373 |
|
cd .. |
374 |
|
mkdir run |
375 |
|
cd run |
376 |
|
\rm * |
377 |
|
\cp ../input/* . |
378 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
379 |
|
qsub job_orion41 |
380 |
|
|
381 |
niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600 |
|
382 |
niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000 |
########################################################################## |
383 |
niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400 |
########################################################################## |
384 |
niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800 |
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc |
385 |
niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200 |
# requires input files in sudirectories run_template and ncep_rgau |
386 |
niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600 |
# presently residing under orion:/tmp1/dmenem/cube |
387 |
niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000 |
|
388 |
niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400 |
cd MITgcm/verification/global_ocean.cs32x15/code |
389 |
niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
390 |
niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
391 |
niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600 |
\cp SIZE.h_50 SIZE.h |
392 |
|
\cp packages.conf_hr packages.conf |
393 |
|
|
394 |
|
cd ../build |
395 |
|
\rm * |
396 |
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
397 |
|
make depend |
398 |
|
make -j |
399 |
|
|
400 |
|
cd .. |
401 |
|
mkdir run |
402 |
|
cd run |
403 |
|
\rm * |
404 |
|
\cp ../input/* . |
405 |
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
406 |
|
qsub job_orion |