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revision 1.19 by dimitri, Sun Jan 25 01:41:01 2004 UTC revision 1.46 by dimitri, Mon Dec 20 22:47:23 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: January 9, 2004.  Date last tested: July 9, 2004.
3  This is the code used for first multi-year 510x510x6  Code and input used for integrating cube9.
 cube-sphere integration.  
4    
5    
6  ##########################################################################  ##########################################################################
7  ##########################################################################  ##########################################################################
8  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs login ( CVS password: cvsanon )  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co MITgcm_code
15  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/input  cvs co MITgcm/verification/global_ocean.cs32x15
16  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/results  cvs co MITgcm/verification/testreport
 cvs co -r hrcube_1 MITgcm_code  
 cvs co -r hrcube_1 MITgcm/verification/global_ocean.cs32x15  
17    
18    
19  ##########################################################################  ##########################################################################
# Line 25  cvs co -r hrcube_1 MITgcm/verification/g Line 22  cvs co -r hrcube_1 MITgcm/verification/g
22    
23  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
24  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
26    cd ../build
27  cd ..  \rm *
 mkdir build  
 cd build  
28  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
29  make depend  make depend
30  make  make
31    cd ..
32    mkdir run
33    cd run
34    \rm *
35    \cp ../input/* .
36    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37    ../build/mitgcmuv >& output.txt
38    
39    comparison output is in:
40    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
41    
42    to use matlab to look at the output
43    matlab
44    
45    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
46        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48    end
49    
50    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
51    mask=0*heff; mask(find(heff>.001))=1;
52    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
53    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
54    clf
55    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
56    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
57    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
58    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
59    
60    
61    ##########################################################################
62    ##########################################################################
63    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
64    
65    cd MITgcm/verification/global_ocean.cs32x15/code
66    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
67    \cp ../code_alt/code.176t_8x4/* .
68    cd ../build
69    \rm *
70    ../../../tools/genmake2 -mods=../code
71    make depend
72    make
73  cd ..  cd ..
74  mkdir run  mkdir run
75  cd run  cd run
76    \rm *
77  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
78  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
80    
# Line 70  subplot(224), mypcolor(vice(:,:,6)'), co Line 106  subplot(224), mypcolor(vice(:,:,6)'), co
106    
107  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
108  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
109  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
110  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
111    
112  cd ..  cd ../build
 mkdir build  
 cd build  
113  \rm *  \rm *
114  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
115  make depend  make depend
116  make  make -j
117    
118  cd ..  cd ..
119  mkdir run  mkdir run
120  cd run  cd run
121  \rm *  \rm *
122  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
123  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
124  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
125    
126    
127  ##########################################################################  ##########################################################################
128  ##########################################################################  ##########################################################################
129  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
130    # starting with pickup file from end of 1992
131  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
 # presently residing under orion:/tmp1/dmenem/cube  
132    
133  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
134  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
 \cp SIZE.h_54 SIZE.h  
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
136  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
 \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
137    
138  cd ..  cd ../build
 mkdir build  
 cd build  
139  \rm *  \rm *
140  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
141  make depend  make depend
142  make  make -j
143    
144  cd ..  cd ..
145  mkdir run  mkdir run
# Line 120  cd run Line 147  cd run
147  \rm *  \rm *
148  \cp ../input/* .  \cp ../input/* .
149  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
150  \cm data.exf_clim_hr data.exf_clim  qsub job_altix92_54t
 qsub job_orion  
151    
152    
153  ##########################################################################  ##########################################################################
# Line 134  cd MITgcm/verification/global_ocean.cs32 Line 160  cd MITgcm/verification/global_ocean.cs32
160  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
161  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
162  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
163  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
164  \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
165    cd ../build
166    \rm *
167    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
168    make depend
169    make -j 4
170    
171    cd ..
172    mkdir run
173    cd run
174    \rm *
175    \cp ../input/* .
176    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
177    ln -sf ../../../../run_template/* .
178    ln -sf pickup.0000290088.data.cube10 pickup.0000000216.data
179    ln -sf pickup_seaice.0000290088.data.cube10 pickup_seaice.0000000216.data
180    \cp ../build/mitgcmuv .
181    qsub job_altix92
182    
183    
184    
185    
186    
187    
188    
189    
190    
191    
192    
193    
194    
195    
196    
197    
198    
199    
200    ##########################################################################
201    ##########################################################################
202    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
203    # requires input files in sudirectories run_template and ncep_rgau
204    # presently residing under orion:/tmp1/dmenem/cube
205    
206    cd MITgcm/verification/global_ocean.cs32x15/code
207    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
208    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
209    \cp SIZE.h_54 SIZE.h
210    \cp packages.conf_hr packages.conf
211    
212    cd ../build
213    \rm *
214    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
215    make depend
216    make -j
217    
218  cd ..  cd ..
219  mkdir build  mkdir run
220  cd build  cd run
221    \rm *
222    \cp ../input/* .
223    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
224    qsub job_orion
225    
226    
227    ##########################################################################
228    ##########################################################################
229    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
230    # requires input files in sudirectories run_template and ncep_rgau
231    # presently residing under orion:/tmp1/dmenem/cube
232    
233    cd MITgcm/verification/global_ocean.cs32x15/code
234    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
235    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
236    \cp SIZE.h_41 SIZE.h
237    \cp packages.conf_hr packages.conf
238    
239    cd ../build
240  \rm *  \rm *
241  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
242  make depend  make depend
243  make  make -j
244    
245  cd ..  cd ..
246  mkdir run  mkdir run
# Line 152  cd run Line 248  cd run
248  \rm *  \rm *
249  \cp ../input/* .  \cp ../input/* .
250  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
251  \cm data.exf_clim_hr data.exf_clim  qsub job_orion41
252  qsub job_altix  
253    
254    ##########################################################################
255    ##########################################################################
256    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
257    # requires input files in sudirectories run_template and ncep_rgau
258    # presently residing under orion:/tmp1/dmenem/cube
259    
260    cd MITgcm/verification/global_ocean.cs32x15/code
261    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
262    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
263    \cp SIZE.h_50 SIZE.h
264    \cp packages.conf_hr packages.conf
265    
266    cd ../build
267    \rm *
268    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
269    make depend
270    make -j
271    
272    cd ..
273    mkdir run
274    cd run
275    \rm *
276    \cp ../input/* .
277    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
278    qsub job_orion
279    
280    
281  ##########################################################################  ##########################################################################
# Line 161  qsub job_altix Line 283  qsub job_altix
283  # matlab script for generating pChkptFreq  # matlab script for generating pChkptFreq
284    
285  nTimeSteps=26352;  nTimeSteps=26352;
286  for niter0=216:26352:(26352*11)  for niter0=216:26352:(26352*12)
287   pChkptFreq=(niter0+nTimeSteps)*1200;   pChkptFreq=(niter0+nTimeSteps)*1200;
288   day=pChkptFreq/24/60/60;   day=pChkptFreq/24/60/60;
289   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
# Line 179  niter0 = 184680, day = 2931, 10-Jan-2000 Line 301  niter0 = 184680, day = 2931, 10-Jan-2000
301  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
302  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
303  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
304    niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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