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Revision 1.90 - (hide annotations) (download)
Wed Feb 7 01:30:48 2007 UTC (18 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.89: +3 -1 lines 
preparing for cube55
1 dimitri 1.88
2 dimitri 1.59 Instructions for setting up a cube-sphere integration with sea-ice.
3 dimitri 1.65
4 dimitri 1.83 Forcing fields and other input files needed for the CS510
5     configuration can be obtained from
6     http://ecco2.org/products/model_setups/cs510.html
7    
8 dimitri 1.72 =================
9     UPDATES
10    
11 dimitri 1.90 February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding
12    
13     February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002)
14 dimitri 1.89 removed UVEL and VVEL from diagnostics
15    
16 dimitri 1.87 January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
17    
18     January 5, 2006: cube50, like cube48 but with snow advection
19 dimitri 1.86
20 dimitri 1.84 December 30, 2006: updates for cube49, the first
21     "blend" integration.
22    
23 dimitri 1.81 December 11, 2006: preparing for cube47, same as cube43
24 dimitri 1.84 but with Arctic monthly river runoff climatology.
25 dimitri 1.81
26 dimitri 1.78 December 5, 2006: 216-CPU code for cube46
27     Changed diagnostics to accomodate JMCs latest and some
28     changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
29     to speed up code.
30 dimitri 1.77
31 dimitri 1.76 November 7, 2006: 216-CPU code for cube43
32     Bug fixes in growth.F routine and new set of diagnostics
33 dimitri 1.74
34 dimitri 1.72 October 15, 2006: 216-CPU code for cube40
35    
36 dimitri 1.66 September 28, 2006: 216-CPU code for cube38
37    
38     September 4, 2006
39 dimitri 1.65 Modified 32*32*6*15 experiments to use grid_cs32.* files from
40     verification/tutorial_held_suarez_cs/input instead of
41     tile* files from verification/global_ocean.cs32x15/input
42    
43 dimitri 1.72 August 8, 2006: 216-CPU code and input used for cube37
44 dimitri 1.64 using "June 10, 2006" MITgcm code.
45 dimitri 1.8
46 dimitri 1.67 for online T/S profile diagnostics all that is needed is
47     profiles_init_fixed
48     profiles_inloop
49     see pkg/ecco/ecco_cost_init_fixed.F
50     pkg/ecco/cost_averagesfields.F
51    
52 dimitri 1.80 ##########################################################################
53     ##########################################################################
54     # Get forcing files, etc.
55     # Example below is for cube46 on /nobackup2a/menemenl
56    
57     cd /nobackup2a/menemenl
58 dimitri 1.82 mkdir cube47
59     cd cube47
60 dimitri 1.80 ln -sf ../run_template .
61     ln -sf ../ncep_rgau .
62    
63 dimitri 1.8
64     ##########################################################################
65     ##########################################################################
66 dimitri 1.14 # getting the code from anonymous CVS server
67 dimitri 1.68
68     bash or sh shell:
69     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
70     $ cvs login
71     ( enter the CVS password: "cvsanon" )
72    
73     tcsh or csh shell:
74     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
75     $ cvs login
76     ( enter the CVS password: "cvsanon" )
77 dimitri 1.1
78 dimitri 1.38 cvs co MITgcm_contrib/high_res_cube/README_ice
79     cvs co MITgcm_contrib/high_res_cube/code-mods
80     cvs co MITgcm_contrib/high_res_cube/input
81     cvs co MITgcm_contrib/high_res_cube/results
82 dimitri 1.43 cvs co MITgcm_code
83     cvs co MITgcm/verification/global_ocean.cs32x15
84 dimitri 1.65 cvs co MITgcm/verification/tutorial_held_suarez_cs/input
85 dimitri 1.14
86    
87     ##########################################################################
88     ##########################################################################
89 dimitri 1.73 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
90    
91     cd MITgcm/verification/global_ocean.cs32x15/code
92     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
93     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
94     \cp SIZE.h_216 SIZE.h
95     \cp packages.conf_hr packages.conf
96    
97     cd ../build
98     \rm *
99 dimitri 1.79 ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
100 dimitri 1.73 make depend
101     make -j
102    
103     cd ..
104     mkdir run
105     cd run
106     \rm *
107     \cp ../input/* .
108     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
109     ln -sf ../../../../run_template/* .
110     \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
111     \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
112 dimitri 1.85 ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
113 dimitri 1.86 ln -sf ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
114 dimitri 1.73 \cp ../build/mitgcmuv .
115     qsub job_altix
116    
117    
118     ##########################################################################
119     ##########################################################################
120 dimitri 1.14 # 32*32*6*15, 1-cpu cube sphere
121 dimitri 1.3
122 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
123 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
124 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
125 dimitri 1.88 \rm CPP_EEOPTIONS.h
126 dimitri 1.37 cd ../build
127     \rm *
128     ../../../tools/genmake2 -mods=../code
129     make depend
130     make
131     cd ..
132     mkdir run
133     cd run
134     \rm *
135 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
136 dimitri 1.37 \cp ../input/* .
137     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
138     ../build/mitgcmuv >& output.txt
139 dimitri 1.3
140 dimitri 1.37 comparison output is in:
141     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
142    
143     to use matlab to look at the output
144     matlab
145    
146 dimitri 1.77 for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
147     'surForcT','oceTAUX','oceTAUY','surForcS'}
148     tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
149 dimitri 1.37 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
150     end
151    
152 dimitri 1.77 heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
153 dimitri 1.37 mask=0*heff; mask(find(heff>.001))=1;
154 dimitri 1.77 uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
155     vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
156 dimitri 1.37 clf
157 dimitri 1.55 subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
158     subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
159     subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
160     subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
161 dimitri 1.37
162    
163     ##########################################################################
164     ##########################################################################
165     # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
166    
167     cd MITgcm/verification/global_ocean.cs32x15/code
168     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
169     \cp ../code_alt/code.176t_8x4/* .
170 dimitri 1.25 cd ../build
171 dimitri 1.37 \rm *
172 dimitri 1.10 ../../../tools/genmake2 -mods=../code
173 dimitri 1.1 make depend
174     make
175     cd ..
176     mkdir run
177     cd run
178 dimitri 1.37 \rm *
179 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
180 dimitri 1.8 \cp ../input/* .
181     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
182 dimitri 1.3 ../build/mitgcmuv >& output.txt
183    
184 dimitri 1.8
185     ##########################################################################
186     ##########################################################################
187 dimitri 1.56 # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
188 dimitri 1.8
189     cd MITgcm/verification/global_ocean.cs32x15/code
190     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
191 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
192 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
193    
194 dimitri 1.25 cd ../build
195 dimitri 1.14 \rm *
196 dimitri 1.54 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
197 dimitri 1.8 make depend
198 dimitri 1.41 make -j
199 dimitri 1.8
200     cd ..
201     mkdir run
202     cd run
203 dimitri 1.14 \rm *
204 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
205 dimitri 1.8 \cp ../input/* .
206     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
207     mpirun -np 2 ../build/mitgcmuv
208    
209    
210     ##########################################################################
211     ##########################################################################
212 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
213 dimitri 1.36 # starting with pickup file from end of 1992
214 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
215    
216     cd MITgcm/verification/global_ocean.cs32x15/code
217     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
218     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
219     \cp packages.conf_hr packages.conf
220    
221     cd ../build
222     \rm *
223 dimitri 1.40 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
224 dimitri 1.35 make depend
225 dimitri 1.41 make -j
226 dimitri 1.35
227     cd ..
228     mkdir run
229     cd run
230     \rm *
231     \cp ../input/* .
232     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
233 dimitri 1.41 qsub job_altix92_54t
234 dimitri 1.35
235    
236     ##########################################################################
237     ##########################################################################
238 dimitri 1.58 # 510*510*6*50, 1500-tile, 150-cpu, excludes land
239     # uses s1500t_17x51 configuration
240    
241     cd MITgcm/verification/global_ocean.cs32x15/code
242     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
243     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
244     \cp SIZE.h_150 SIZE.h
245     \cp packages.conf_hr packages.conf
246    
247     cd ../build
248     \rm *
249     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
250     make depend
251     make -j
252    
253     cd ..
254     mkdir run
255     cd run
256     \rm *
257     \cp ../input/* .
258     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
259     ln -sf ../../../../run_template/* .
260     \rm pickup*
261 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
262     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
263 dimitri 1.58 \cp ../build/mitgcmuv mitgcmuv150
264     qsub job_altix150
265    
266    
267 dimitri 1.61 ##########################################################################
268     ##########################################################################
269     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
270     # uses s1500t_17x51 configuration
271     # example for running on c17-c20 using arrayd
272    
273     cd MITgcm/verification/global_ocean.cs32x15/code
274     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
275     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
276     \cp SIZE.h_375 SIZE.h
277     \cp packages.conf_hr packages.conf
278    
279     cd ../build
280     \rm *
281     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
282     make depend
283     make -j
284    
285     cd ..
286     mkdir run
287     cd run
288     \rm *
289     \cp ../input/* .
290     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
291     ln -sf ../../../../run_template/* .
292     \rm pickup*
293     ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
294     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
295     \cp ../build/mitgcmuv .
296     job_c20_375cpu < /dev/null >&! output.run &
297    
298 dimitri 1.58
299 dimitri 1.56 ##########################################################################
300     ##########################################################################
301     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
302     # uses s1500t_17x51 configuration
303     # example for running on c17-c20 using arrayd
304    
305     cd MITgcm/verification/global_ocean.cs32x15/code
306     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
307     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
308     \cp SIZE.h_375 SIZE.h
309     \cp packages.conf_hr packages.conf
310    
311     cd ../build
312     \rm *
313     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
314     make depend
315     make -j
316    
317     cd ..
318     mkdir run
319     cd run
320     \rm *
321     \cp ../input/* .
322     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
323     ln -sf ../../../../run_template/* .
324     \rm pickup*
325 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
326     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
327 dimitri 1.56 \cp ../build/mitgcmuv .
328 dimitri 1.57 job_c20_375cpu < /dev/null >&! output.run &
329    
330    
331     ##########################################################################
332     ##########################################################################
333     # 510*510*6*50, 1500-tile, 500-cpu, excludes land
334     # uses s1500t_17x51 configuration
335     # example for running on c17-c20 using arrayd
336    
337     cd MITgcm/verification/global_ocean.cs32x15/code
338     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
339     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
340     \cp SIZE.h_500 SIZE.h
341     \cp packages.conf_hr packages.conf
342    
343     cd ../build
344     \rm *
345     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
346     make depend
347     make -j
348    
349     cd ..
350     mkdir run
351     cd run
352     \rm *
353     \cp ../input/* .
354     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
355     ln -sf ../../../../run_template/* .
356     \rm pickup*
357 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
358     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
359 dimitri 1.57 \cp ../build/mitgcmuv .
360     job_c19_500cpu < /dev/null >&! output.run &
361 dimitri 1.56
362    
363 dimitri 1.60 ##########################################################################
364     ##########################################################################
365     # 510*510*6*50, 216-cpu cube sphere on cosmos
366    
367     cd MITgcm/verification/global_ocean.cs32x15/code
368     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
369     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
370     \cp SIZE.h_216 SIZE.h
371     \cp packages.conf_hr packages.conf
372    
373     module unload latest_intel80
374     module unload mpich-gm-intel80
375     module load latest_intel81
376     module load mpich-gm-intel81
377    
378     cd ../build
379     \rm *
380     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
381     make depend
382     make -j
383    
384     cd ..
385     mkdir run
386     cd run
387     \rm *
388     \cp ../input/* .
389     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
390     ln -sf ../../../../run_template/* .
391     \rm pickup*
392 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
393     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
394 dimitri 1.60 \cp ../build/mitgcmuv .
395     bsub < job_cosmos
396    
397 dimitri 1.41
398 dimitri 1.42 ##########################################################################
399     ##########################################################################
400     # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
401     # requires input files in sudirectories run_template and ncep_rgau
402     # presently residing under orion:/tmp1/dmenem/cube
403 dimitri 1.41
404 dimitri 1.42 cd MITgcm/verification/global_ocean.cs32x15/code
405     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
406     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
407     \cp SIZE.h_54 SIZE.h
408     \cp packages.conf_hr packages.conf
409 dimitri 1.41
410 dimitri 1.42 cd ../build
411     \rm *
412     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
413     make depend
414     make -j
415 dimitri 1.41
416 dimitri 1.42 cd ..
417     mkdir run
418     cd run
419     \rm *
420     \cp ../input/* .
421     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
422     qsub job_orion
423 dimitri 1.35
424    
425     ##########################################################################
426     ##########################################################################
427 dimitri 1.41 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
428 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
429     # presently residing under orion:/tmp1/dmenem/cube
430    
431     cd MITgcm/verification/global_ocean.cs32x15/code
432     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
433 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
434     \cp SIZE.h_41 SIZE.h
435 dimitri 1.35 \cp packages.conf_hr packages.conf
436    
437     cd ../build
438     \rm *
439 dimitri 1.41 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
440 dimitri 1.35 make depend
441 dimitri 1.41 make -j
442 dimitri 1.35
443     cd ..
444     mkdir run
445     cd run
446     \rm *
447     \cp ../input/* .
448     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
449 dimitri 1.41 qsub job_orion41
450 dimitri 1.9
451    
452     ##########################################################################
453     ##########################################################################
454 dimitri 1.41 # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
455 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
456 dimitri 1.41 # presently residing under orion:/tmp1/dmenem/cube
457 dimitri 1.9
458     cd MITgcm/verification/global_ocean.cs32x15/code
459     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
460 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
461     \cp SIZE.h_50 SIZE.h
462 dimitri 1.12 \cp packages.conf_hr packages.conf
463 dimitri 1.9
464 dimitri 1.25 cd ../build
465 dimitri 1.15 \rm *
466 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
467 dimitri 1.9 make depend
468 dimitri 1.41 make -j
469 dimitri 1.9
470     cd ..
471     mkdir run
472     cd run
473 dimitri 1.15 \rm *
474     \cp ../input/* .
475     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
476 dimitri 1.41 qsub job_orion
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