Annotation of /MITgcm_contrib/high_res_cube/README_ice


Instructions for setting up a cube-sphere integration with sea-ice.

Forcing fields and other input files needed for the CS510
configuration can be obtained from
http://ecco2.org/products/model_setups/cs510.html

=================
UPDATES

February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.0012)
                  removed UVEL and VVEL from diagnostics

January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012

January 5, 2006: cube50, like cube48 but with snow advection

December 30, 2006: updates for cube49, the first
"blend" integration.

December 11, 2006: preparing for cube47, same as cube43
but with Arctic monthly river runoff climatology.

December 5, 2006: 216-CPU code for cube46
Changed diagnostics to accomodate JMCs latest and some
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
to speed up code.

November 7, 2006: 216-CPU code for cube43
Bug fixes in growth.F routine and new set of diagnostics

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F

##########################################################################
##########################################################################
# Get forcing files, etc.
# Example below is for cube46 on /nobackup2a/menemenl

cd /nobackup2a/menemenl
mkdir cube47
cd cube47
ln -sf ../run_template .
ln -sf ../ncep_rgau .


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\rm CPP_EEOPTIONS.h
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
         'surForcT','oceTAUX','oceTAUY','surForcS'}
    tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	dimitri	1.88
2	dimitri	1.59	Instructions for setting up a cube-sphere integration with sea-ice.
3	dimitri	1.65
4	dimitri	1.83	Forcing fields and other input files needed for the CS510
5			configuration can be obtained from
6			http://ecco2.org/products/model_setups/cs510.html
7
8	dimitri	1.72	=================
9			UPDATES
10
11	dimitri	1.89	February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.0012)
12			removed UVEL and VVEL from diagnostics
13
14	dimitri	1.87	January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
15
16			January 5, 2006: cube50, like cube48 but with snow advection
17	dimitri	1.86
18	dimitri	1.84	December 30, 2006: updates for cube49, the first
19			"blend" integration.
20
21	dimitri	1.81	December 11, 2006: preparing for cube47, same as cube43
22	dimitri	1.84	but with Arctic monthly river runoff climatology.
23	dimitri	1.81
24	dimitri	1.78	December 5, 2006: 216-CPU code for cube46
25			Changed diagnostics to accomodate JMCs latest and some
26			changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
27			to speed up code.
28	dimitri	1.77
29	dimitri	1.76	November 7, 2006: 216-CPU code for cube43
30			Bug fixes in growth.F routine and new set of diagnostics
31	dimitri	1.74
32	dimitri	1.72	October 15, 2006: 216-CPU code for cube40
33
34	dimitri	1.66	September 28, 2006: 216-CPU code for cube38
35
36			September 4, 2006
37	dimitri	1.65	Modified 3232615 experiments to use grid_cs32. files from
38			verification/tutorial_held_suarez_cs/input instead of
39			tile* files from verification/global_ocean.cs32x15/input
40
41	dimitri	1.72	August 8, 2006: 216-CPU code and input used for cube37
42	dimitri	1.64	using "June 10, 2006" MITgcm code.
43	dimitri	1.8
44	dimitri	1.67	for online T/S profile diagnostics all that is needed is
45			profiles_init_fixed
46			profiles_inloop
47			see pkg/ecco/ecco_cost_init_fixed.F
48			pkg/ecco/cost_averagesfields.F
49
50	dimitri	1.80	##########################################################################
51			##########################################################################
52			# Get forcing files, etc.
53			# Example below is for cube46 on /nobackup2a/menemenl
54
55			cd /nobackup2a/menemenl
56	dimitri	1.82	mkdir cube47
57			cd cube47
58	dimitri	1.80	ln -sf ../run_template .
59			ln -sf ../ncep_rgau .
60
61	dimitri	1.8
62			##########################################################################
63			##########################################################################
64	dimitri	1.14	# getting the code from anonymous CVS server
65	dimitri	1.68
66			bash or sh shell:
67			$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
68			$ cvs login
69			( enter the CVS password: "cvsanon" )
70
71			tcsh or csh shell:
72			$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
73			$ cvs login
74			( enter the CVS password: "cvsanon" )
75	dimitri	1.1
76	dimitri	1.38	cvs co MITgcm_contrib/high_res_cube/README_ice
77			cvs co MITgcm_contrib/high_res_cube/code-mods
78			cvs co MITgcm_contrib/high_res_cube/input
79			cvs co MITgcm_contrib/high_res_cube/results
80	dimitri	1.43	cvs co MITgcm_code
81			cvs co MITgcm/verification/global_ocean.cs32x15
82	dimitri	1.65	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
83	dimitri	1.14
84
85			##########################################################################
86			##########################################################################
87	dimitri	1.73	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
88
89			cd MITgcm/verification/global_ocean.cs32x15/code
90			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
91			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
92			\cp SIZE.h_216 SIZE.h
93			\cp packages.conf_hr packages.conf
94
95			cd ../build
96			\rm *
97	dimitri	1.79	../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
98	dimitri	1.73	make depend
99			make -j
100
101			cd ..
102			mkdir run
103			cd run
104			\rm *
105			\cp ../input/* .
106			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
107			ln -sf ../../../../run_template/* .
108			\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
109			\rm bathy_Hmin50.bin 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
110	dimitri	1.85	ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
111	dimitri	1.86	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
112	dimitri	1.73	\cp ../build/mitgcmuv .
113			qsub job_altix
114
115
116			##########################################################################
117			##########################################################################
118	dimitri	1.14	# 32326*15, 1-cpu cube sphere
119	dimitri	1.3
120	dimitri	1.1	cd MITgcm/verification/global_ocean.cs32x15/code
121	dimitri	1.8	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
122	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
123	dimitri	1.88	\rm CPP_EEOPTIONS.h
124	dimitri	1.37	cd ../build
125			\rm *
126			../../../tools/genmake2 -mods=../code
127			make depend
128			make
129			cd ..
130			mkdir run
131			cd run
132			\rm *
133	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
134	dimitri	1.37	\cp ../input/* .
135			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
136			../build/mitgcmuv >& output.txt
137	dimitri	1.3
138	dimitri	1.37	comparison output is in:
139			../../../../MITgcm_contrib/high_res_cube/results/output.txt
140
141			to use matlab to look at the output
142			matlab
143
144	dimitri	1.77	for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
145			'surForcT','oceTAUX','oceTAUY','surForcS'}
146			tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
147	dimitri	1.37	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
148			end
149
150	dimitri	1.77	heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
151	dimitri	1.37	mask=0*heff; mask(find(heff>.001))=1;
152	dimitri	1.77	uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
153			vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
154	dimitri	1.37	clf
155	dimitri	1.55	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
156			subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
157			subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
158			subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
159	dimitri	1.37
160
161			##########################################################################
162			##########################################################################
163			# 32326*15, 17-tile, 1-cpu cube sphere experiment
164
165			cd MITgcm/verification/global_ocean.cs32x15/code
166			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
167			\cp ../code_alt/code.176t_8x4/* .
168	dimitri	1.25	cd ../build
169	dimitri	1.37	\rm *
170	dimitri	1.10	../../../tools/genmake2 -mods=../code
171	dimitri	1.1	make depend
172			make
173			cd ..
174			mkdir run
175			cd run
176	dimitri	1.37	\rm *
177	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
178	dimitri	1.8	\cp ../input/* .
179			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
180	dimitri	1.3	../build/mitgcmuv >& output.txt
181
182	dimitri	1.8
183			##########################################################################
184			##########################################################################
185	dimitri	1.56	# 32326*15, 2-cpu cube sphere on the altices with ifort
186	dimitri	1.8
187			cd MITgcm/verification/global_ocean.cs32x15/code
188			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
189	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
190	dimitri	1.8	\cp SIZE.h_mpi SIZE.h
191
192	dimitri	1.25	cd ../build
193	dimitri	1.14	\rm *
194	dimitri	1.54	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
195	dimitri	1.8	make depend
196	dimitri	1.41	make -j
197	dimitri	1.8
198			cd ..
199			mkdir run
200			cd run
201	dimitri	1.14	\rm *
202	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
203	dimitri	1.8	\cp ../input/* .
204			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
205			mpirun -np 2 ../build/mitgcmuv
206
207
208			##########################################################################
209			##########################################################################
210	dimitri	1.35	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
211	dimitri	1.36	# starting with pickup file from end of 1992
212	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
213
214			cd MITgcm/verification/global_ocean.cs32x15/code
215			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
216			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
217			\cp packages.conf_hr packages.conf
218
219			cd ../build
220			\rm *
221	dimitri	1.40	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
222	dimitri	1.35	make depend
223	dimitri	1.41	make -j
224	dimitri	1.35
225			cd ..
226			mkdir run
227			cd run
228			\rm *
229			\cp ../input/* .
230			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
231	dimitri	1.41	qsub job_altix92_54t
232	dimitri	1.35
233
234			##########################################################################
235			##########################################################################
236	dimitri	1.58	# 5105106*50, 1500-tile, 150-cpu, excludes land
237			# uses s1500t_17x51 configuration
238
239			cd MITgcm/verification/global_ocean.cs32x15/code
240			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
241			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
242			\cp SIZE.h_150 SIZE.h
243			\cp packages.conf_hr packages.conf
244
245			cd ../build
246			\rm *
247			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
248			make depend
249			make -j
250
251			cd ..
252			mkdir run
253			cd run
254			\rm *
255			\cp ../input/* .
256			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
257			ln -sf ../../../../run_template/* .
258			\rm pickup*
259	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
260			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
261	dimitri	1.58	\cp ../build/mitgcmuv mitgcmuv150
262			qsub job_altix150
263
264
265	dimitri	1.61	##########################################################################
266			##########################################################################
267			# 5105106*50, 1500-tile, 375-cpu, excludes land
268			# uses s1500t_17x51 configuration
269			# example for running on c17-c20 using arrayd
270
271			cd MITgcm/verification/global_ocean.cs32x15/code
272			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
273			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
274			\cp SIZE.h_375 SIZE.h
275			\cp packages.conf_hr packages.conf
276
277			cd ../build
278			\rm *
279			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
280			make depend
281			make -j
282
283			cd ..
284			mkdir run
285			cd run
286			\rm *
287			\cp ../input/* .
288			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
289			ln -sf ../../../../run_template/* .
290			\rm pickup*
291			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
292			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
293			\cp ../build/mitgcmuv .
294			job_c20_375cpu < /dev/null >&! output.run &
295
296	dimitri	1.58
297	dimitri	1.56	##########################################################################
298			##########################################################################
299			# 5105106*50, 1500-tile, 375-cpu, excludes land
300			# uses s1500t_17x51 configuration
301			# example for running on c17-c20 using arrayd
302
303			cd MITgcm/verification/global_ocean.cs32x15/code
304			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
305			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
306			\cp SIZE.h_375 SIZE.h
307			\cp packages.conf_hr packages.conf
308
309			cd ../build
310			\rm *
311			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
312			make depend
313			make -j
314
315			cd ..
316			mkdir run
317			cd run
318			\rm *
319			\cp ../input/* .
320			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
321			ln -sf ../../../../run_template/* .
322			\rm pickup*
323	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
324			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
325	dimitri	1.56	\cp ../build/mitgcmuv .
326	dimitri	1.57	job_c20_375cpu < /dev/null >&! output.run &
327
328
329			##########################################################################
330			##########################################################################
331			# 5105106*50, 1500-tile, 500-cpu, excludes land
332			# uses s1500t_17x51 configuration
333			# example for running on c17-c20 using arrayd
334
335			cd MITgcm/verification/global_ocean.cs32x15/code
336			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
337			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
338			\cp SIZE.h_500 SIZE.h
339			\cp packages.conf_hr packages.conf
340
341			cd ../build
342			\rm *
343			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
344			make depend
345			make -j
346
347			cd ..
348			mkdir run
349			cd run
350			\rm *
351			\cp ../input/* .
352			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
353			ln -sf ../../../../run_template/* .
354			\rm pickup*
355	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
356			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
357	dimitri	1.57	\cp ../build/mitgcmuv .
358			job_c19_500cpu < /dev/null >&! output.run &
359	dimitri	1.56
360
361	dimitri	1.60	##########################################################################
362			##########################################################################
363			# 5105106*50, 216-cpu cube sphere on cosmos
364
365			cd MITgcm/verification/global_ocean.cs32x15/code
366			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
367			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
368			\cp SIZE.h_216 SIZE.h
369			\cp packages.conf_hr packages.conf
370
371			module unload latest_intel80
372			module unload mpich-gm-intel80
373			module load latest_intel81
374			module load mpich-gm-intel81
375
376			cd ../build
377			\rm *
378			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
379			make depend
380			make -j
381
382			cd ..
383			mkdir run
384			cd run
385			\rm *
386			\cp ../input/* .
387			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
388			ln -sf ../../../../run_template/* .
389			\rm pickup*
390	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
391			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
392	dimitri	1.60	\cp ../build/mitgcmuv .
393			bsub < job_cosmos
394
395	dimitri	1.41
396	dimitri	1.42	##########################################################################
397			##########################################################################
398			# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
399			# requires input files in sudirectories run_template and ncep_rgau
400			# presently residing under orion:/tmp1/dmenem/cube
401	dimitri	1.41
402	dimitri	1.42	cd MITgcm/verification/global_ocean.cs32x15/code
403			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
404			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
405			\cp SIZE.h_54 SIZE.h
406			\cp packages.conf_hr packages.conf
407	dimitri	1.41
408	dimitri	1.42	cd ../build
409			\rm *
410			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
411			make depend
412			make -j
413	dimitri	1.41
414	dimitri	1.42	cd ..
415			mkdir run
416			cd run
417			\rm *
418			\cp ../input/* .
419			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
420			qsub job_orion
421	dimitri	1.35
422
423			##########################################################################
424			##########################################################################
425	dimitri	1.41	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
426	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
427			# presently residing under orion:/tmp1/dmenem/cube
428
429			cd MITgcm/verification/global_ocean.cs32x15/code
430			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
431	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
432			\cp SIZE.h_41 SIZE.h
433	dimitri	1.35	\cp packages.conf_hr packages.conf
434
435			cd ../build
436			\rm *
437	dimitri	1.41	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
438	dimitri	1.35	make depend
439	dimitri	1.41	make -j
440	dimitri	1.35
441			cd ..
442			mkdir run
443			cd run
444			\rm *
445			\cp ../input/* .
446			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
447	dimitri	1.41	qsub job_orion41
448	dimitri	1.9
449
450			##########################################################################
451			##########################################################################
452	dimitri	1.41	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
453	dimitri	1.17	# requires input files in sudirectories run_template and ncep_rgau
454	dimitri	1.41	# presently residing under orion:/tmp1/dmenem/cube
455	dimitri	1.9
456			cd MITgcm/verification/global_ocean.cs32x15/code
457			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
458	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
459			\cp SIZE.h_50 SIZE.h
460	dimitri	1.12	\cp packages.conf_hr packages.conf
461	dimitri	1.9
462	dimitri	1.25	cd ../build
463	dimitri	1.15	\rm *
464	dimitri	1.13	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
465	dimitri	1.9	make depend
466	dimitri	1.41	make -j
467	dimitri	1.9
468			cd ..
469			mkdir run
470			cd run
471	dimitri	1.15	\rm *
472			\cp ../input/* .
473			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
474	dimitri	1.41	qsub job_orion