Annotation of /MITgcm_contrib/high_res_cube/README_ice


Instructions for setting up a cube-sphere integration with sea-ice.

Forcing fields and other input files needed for the CS510
configuration can be obtained from
http://ecco2.org/products/model_setups/cs510.html

=================
UPDATES

January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012

January 5, 2006: cube50, like cube48 but with snow advection

December 30, 2006: updates for cube49, the first
"blend" integration.

December 11, 2006: preparing for cube47, same as cube43
but with Arctic monthly river runoff climatology.

December 5, 2006: 216-CPU code for cube46
Changed diagnostics to accomodate JMCs latest and some
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
to speed up code.

November 7, 2006: 216-CPU code for cube43
Bug fixes in growth.F routine and new set of diagnostics

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F

##########################################################################
##########################################################################
# Get forcing files, etc.
# Example below is for cube46 on /nobackup2a/menemenl

cd /nobackup2a/menemenl
mkdir cube47
cd cube47
ln -sf ../run_template .
ln -sf ../ncep_rgau .


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\rm CPP_EEOPTIONS.h
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
         'surForcT','oceTAUX','oceTAUY','surForcS'}
    tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	dimitri	1.88
2	dimitri	1.59	Instructions for setting up a cube-sphere integration with sea-ice.
3	dimitri	1.65
4	dimitri	1.83	Forcing fields and other input files needed for the CS510
5			configuration can be obtained from
6			http://ecco2.org/products/model_setups/cs510.html
7
8	dimitri	1.72	=================
9			UPDATES
10
11	dimitri	1.87	January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
12
13			January 5, 2006: cube50, like cube48 but with snow advection
14	dimitri	1.86
15	dimitri	1.84	December 30, 2006: updates for cube49, the first
16			"blend" integration.
17
18	dimitri	1.81	December 11, 2006: preparing for cube47, same as cube43
19	dimitri	1.84	but with Arctic monthly river runoff climatology.
20	dimitri	1.81
21	dimitri	1.78	December 5, 2006: 216-CPU code for cube46
22			Changed diagnostics to accomodate JMCs latest and some
23			changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
24			to speed up code.
25	dimitri	1.77
26	dimitri	1.76	November 7, 2006: 216-CPU code for cube43
27			Bug fixes in growth.F routine and new set of diagnostics
28	dimitri	1.74
29	dimitri	1.72	October 15, 2006: 216-CPU code for cube40
30
31	dimitri	1.66	September 28, 2006: 216-CPU code for cube38
32
33			September 4, 2006
34	dimitri	1.65	Modified 3232615 experiments to use grid_cs32. files from
35			verification/tutorial_held_suarez_cs/input instead of
36			tile* files from verification/global_ocean.cs32x15/input
37
38	dimitri	1.72	August 8, 2006: 216-CPU code and input used for cube37
39	dimitri	1.64	using "June 10, 2006" MITgcm code.
40	dimitri	1.8
41	dimitri	1.67	for online T/S profile diagnostics all that is needed is
42			profiles_init_fixed
43			profiles_inloop
44			see pkg/ecco/ecco_cost_init_fixed.F
45			pkg/ecco/cost_averagesfields.F
46
47	dimitri	1.80	##########################################################################
48			##########################################################################
49			# Get forcing files, etc.
50			# Example below is for cube46 on /nobackup2a/menemenl
51
52			cd /nobackup2a/menemenl
53	dimitri	1.82	mkdir cube47
54			cd cube47
55	dimitri	1.80	ln -sf ../run_template .
56			ln -sf ../ncep_rgau .
57
58	dimitri	1.8
59			##########################################################################
60			##########################################################################
61	dimitri	1.14	# getting the code from anonymous CVS server
62	dimitri	1.68
63			bash or sh shell:
64			$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
65			$ cvs login
66			( enter the CVS password: "cvsanon" )
67
68			tcsh or csh shell:
69			$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
70			$ cvs login
71			( enter the CVS password: "cvsanon" )
72	dimitri	1.1
73	dimitri	1.38	cvs co MITgcm_contrib/high_res_cube/README_ice
74			cvs co MITgcm_contrib/high_res_cube/code-mods
75			cvs co MITgcm_contrib/high_res_cube/input
76			cvs co MITgcm_contrib/high_res_cube/results
77	dimitri	1.43	cvs co MITgcm_code
78			cvs co MITgcm/verification/global_ocean.cs32x15
79	dimitri	1.65	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
80	dimitri	1.14
81
82			##########################################################################
83			##########################################################################
84	dimitri	1.73	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
85
86			cd MITgcm/verification/global_ocean.cs32x15/code
87			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
88			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
89			\cp SIZE.h_216 SIZE.h
90			\cp packages.conf_hr packages.conf
91
92			cd ../build
93			\rm *
94	dimitri	1.79	../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
95	dimitri	1.73	make depend
96			make -j
97
98			cd ..
99			mkdir run
100			cd run
101			\rm *
102			\cp ../input/* .
103			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104			ln -sf ../../../../run_template/* .
105			\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
106			\rm bathy_Hmin50.bin 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
107	dimitri	1.85	ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
108	dimitri	1.86	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
109	dimitri	1.73	\cp ../build/mitgcmuv .
110			qsub job_altix
111
112
113			##########################################################################
114			##########################################################################
115	dimitri	1.14	# 32326*15, 1-cpu cube sphere
116	dimitri	1.3
117	dimitri	1.1	cd MITgcm/verification/global_ocean.cs32x15/code
118	dimitri	1.8	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
119	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
120	dimitri	1.88	\rm CPP_EEOPTIONS.h
121	dimitri	1.37	cd ../build
122			\rm *
123			../../../tools/genmake2 -mods=../code
124			make depend
125			make
126			cd ..
127			mkdir run
128			cd run
129			\rm *
130	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
131	dimitri	1.37	\cp ../input/* .
132			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
133			../build/mitgcmuv >& output.txt
134	dimitri	1.3
135	dimitri	1.37	comparison output is in:
136			../../../../MITgcm_contrib/high_res_cube/results/output.txt
137
138			to use matlab to look at the output
139			matlab
140
141	dimitri	1.77	for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
142			'surForcT','oceTAUX','oceTAUY','surForcS'}
143			tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
144	dimitri	1.37	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
145			end
146
147	dimitri	1.77	heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
148	dimitri	1.37	mask=0*heff; mask(find(heff>.001))=1;
149	dimitri	1.77	uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
150			vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
151	dimitri	1.37	clf
152	dimitri	1.55	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
153			subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
154			subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
155			subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
156	dimitri	1.37
157
158			##########################################################################
159			##########################################################################
160			# 32326*15, 17-tile, 1-cpu cube sphere experiment
161
162			cd MITgcm/verification/global_ocean.cs32x15/code
163			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
164			\cp ../code_alt/code.176t_8x4/* .
165	dimitri	1.25	cd ../build
166	dimitri	1.37	\rm *
167	dimitri	1.10	../../../tools/genmake2 -mods=../code
168	dimitri	1.1	make depend
169			make
170			cd ..
171			mkdir run
172			cd run
173	dimitri	1.37	\rm *
174	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
175	dimitri	1.8	\cp ../input/* .
176			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
177	dimitri	1.3	../build/mitgcmuv >& output.txt
178
179	dimitri	1.8
180			##########################################################################
181			##########################################################################
182	dimitri	1.56	# 32326*15, 2-cpu cube sphere on the altices with ifort
183	dimitri	1.8
184			cd MITgcm/verification/global_ocean.cs32x15/code
185			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
186	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
187	dimitri	1.8	\cp SIZE.h_mpi SIZE.h
188
189	dimitri	1.25	cd ../build
190	dimitri	1.14	\rm *
191	dimitri	1.54	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
192	dimitri	1.8	make depend
193	dimitri	1.41	make -j
194	dimitri	1.8
195			cd ..
196			mkdir run
197			cd run
198	dimitri	1.14	\rm *
199	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
200	dimitri	1.8	\cp ../input/* .
201			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
202			mpirun -np 2 ../build/mitgcmuv
203
204
205			##########################################################################
206			##########################################################################
207	dimitri	1.35	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
208	dimitri	1.36	# starting with pickup file from end of 1992
209	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
210
211			cd MITgcm/verification/global_ocean.cs32x15/code
212			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
213			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
214			\cp packages.conf_hr packages.conf
215
216			cd ../build
217			\rm *
218	dimitri	1.40	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
219	dimitri	1.35	make depend
220	dimitri	1.41	make -j
221	dimitri	1.35
222			cd ..
223			mkdir run
224			cd run
225			\rm *
226			\cp ../input/* .
227			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
228	dimitri	1.41	qsub job_altix92_54t
229	dimitri	1.35
230
231			##########################################################################
232			##########################################################################
233	dimitri	1.58	# 5105106*50, 1500-tile, 150-cpu, excludes land
234			# uses s1500t_17x51 configuration
235
236			cd MITgcm/verification/global_ocean.cs32x15/code
237			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
238			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
239			\cp SIZE.h_150 SIZE.h
240			\cp packages.conf_hr packages.conf
241
242			cd ../build
243			\rm *
244			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
245			make depend
246			make -j
247
248			cd ..
249			mkdir run
250			cd run
251			\rm *
252			\cp ../input/* .
253			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
254			ln -sf ../../../../run_template/* .
255			\rm pickup*
256	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
257			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
258	dimitri	1.58	\cp ../build/mitgcmuv mitgcmuv150
259			qsub job_altix150
260
261
262	dimitri	1.61	##########################################################################
263			##########################################################################
264			# 5105106*50, 1500-tile, 375-cpu, excludes land
265			# uses s1500t_17x51 configuration
266			# example for running on c17-c20 using arrayd
267
268			cd MITgcm/verification/global_ocean.cs32x15/code
269			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
270			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
271			\cp SIZE.h_375 SIZE.h
272			\cp packages.conf_hr packages.conf
273
274			cd ../build
275			\rm *
276			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
277			make depend
278			make -j
279
280			cd ..
281			mkdir run
282			cd run
283			\rm *
284			\cp ../input/* .
285			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
286			ln -sf ../../../../run_template/* .
287			\rm pickup*
288			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
289			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
290			\cp ../build/mitgcmuv .
291			job_c20_375cpu < /dev/null >&! output.run &
292
293	dimitri	1.58
294	dimitri	1.56	##########################################################################
295			##########################################################################
296			# 5105106*50, 1500-tile, 375-cpu, excludes land
297			# uses s1500t_17x51 configuration
298			# example for running on c17-c20 using arrayd
299
300			cd MITgcm/verification/global_ocean.cs32x15/code
301			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
302			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
303			\cp SIZE.h_375 SIZE.h
304			\cp packages.conf_hr packages.conf
305
306			cd ../build
307			\rm *
308			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
309			make depend
310			make -j
311
312			cd ..
313			mkdir run
314			cd run
315			\rm *
316			\cp ../input/* .
317			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
318			ln -sf ../../../../run_template/* .
319			\rm pickup*
320	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
321			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
322	dimitri	1.56	\cp ../build/mitgcmuv .
323	dimitri	1.57	job_c20_375cpu < /dev/null >&! output.run &
324
325
326			##########################################################################
327			##########################################################################
328			# 5105106*50, 1500-tile, 500-cpu, excludes land
329			# uses s1500t_17x51 configuration
330			# example for running on c17-c20 using arrayd
331
332			cd MITgcm/verification/global_ocean.cs32x15/code
333			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
334			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
335			\cp SIZE.h_500 SIZE.h
336			\cp packages.conf_hr packages.conf
337
338			cd ../build
339			\rm *
340			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
341			make depend
342			make -j
343
344			cd ..
345			mkdir run
346			cd run
347			\rm *
348			\cp ../input/* .
349			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
350			ln -sf ../../../../run_template/* .
351			\rm pickup*
352	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
353			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
354	dimitri	1.57	\cp ../build/mitgcmuv .
355			job_c19_500cpu < /dev/null >&! output.run &
356	dimitri	1.56
357
358	dimitri	1.60	##########################################################################
359			##########################################################################
360			# 5105106*50, 216-cpu cube sphere on cosmos
361
362			cd MITgcm/verification/global_ocean.cs32x15/code
363			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
364			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
365			\cp SIZE.h_216 SIZE.h
366			\cp packages.conf_hr packages.conf
367
368			module unload latest_intel80
369			module unload mpich-gm-intel80
370			module load latest_intel81
371			module load mpich-gm-intel81
372
373			cd ../build
374			\rm *
375			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
376			make depend
377			make -j
378
379			cd ..
380			mkdir run
381			cd run
382			\rm *
383			\cp ../input/* .
384			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
385			ln -sf ../../../../run_template/* .
386			\rm pickup*
387	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
388			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
389	dimitri	1.60	\cp ../build/mitgcmuv .
390			bsub < job_cosmos
391
392	dimitri	1.41
393	dimitri	1.42	##########################################################################
394			##########################################################################
395			# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
396			# requires input files in sudirectories run_template and ncep_rgau
397			# presently residing under orion:/tmp1/dmenem/cube
398	dimitri	1.41
399	dimitri	1.42	cd MITgcm/verification/global_ocean.cs32x15/code
400			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
401			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
402			\cp SIZE.h_54 SIZE.h
403			\cp packages.conf_hr packages.conf
404	dimitri	1.41
405	dimitri	1.42	cd ../build
406			\rm *
407			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
408			make depend
409			make -j
410	dimitri	1.41
411	dimitri	1.42	cd ..
412			mkdir run
413			cd run
414			\rm *
415			\cp ../input/* .
416			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
417			qsub job_orion
418	dimitri	1.35
419
420			##########################################################################
421			##########################################################################
422	dimitri	1.41	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
423	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
424			# presently residing under orion:/tmp1/dmenem/cube
425
426			cd MITgcm/verification/global_ocean.cs32x15/code
427			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
428	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
429			\cp SIZE.h_41 SIZE.h
430	dimitri	1.35	\cp packages.conf_hr packages.conf
431
432			cd ../build
433			\rm *
434	dimitri	1.41	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
435	dimitri	1.35	make depend
436	dimitri	1.41	make -j
437	dimitri	1.35
438			cd ..
439			mkdir run
440			cd run
441			\rm *
442			\cp ../input/* .
443			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
444	dimitri	1.41	qsub job_orion41
445	dimitri	1.9
446
447			##########################################################################
448			##########################################################################
449	dimitri	1.41	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
450	dimitri	1.17	# requires input files in sudirectories run_template and ncep_rgau
451	dimitri	1.41	# presently residing under orion:/tmp1/dmenem/cube
452	dimitri	1.9
453			cd MITgcm/verification/global_ocean.cs32x15/code
454			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
455	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
456			\cp SIZE.h_50 SIZE.h
457	dimitri	1.12	\cp packages.conf_hr packages.conf
458	dimitri	1.9
459	dimitri	1.25	cd ../build
460	dimitri	1.15	\rm *
461	dimitri	1.13	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
462	dimitri	1.9	make depend
463	dimitri	1.41	make -j
464	dimitri	1.9
465			cd ..
466			mkdir run
467			cd run
468	dimitri	1.15	\rm *
469			\cp ../input/* .
470			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
471	dimitri	1.41	qsub job_orion