Annotation of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

Forcing fields and other input files needed for the CS510
configuration can be obtained from
http://ecco2.org/products/model_setups/cs510.html

=================
UPDATES

January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012

January 5, 2006: cube50, like cube48 but with snow advection

December 30, 2006: updates for cube49, the first
"blend" integration.

December 11, 2006: preparing for cube47, same as cube43
but with Arctic monthly river runoff climatology.

December 5, 2006: 216-CPU code for cube46
Changed diagnostics to accomodate JMCs latest and some
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
to speed up code.

November 7, 2006: 216-CPU code for cube43
Bug fixes in growth.F routine and new set of diagnostics

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F

##########################################################################
##########################################################################
# Get forcing files, etc.
# Example below is for cube46 on /nobackup2a/menemenl

cd /nobackup2a/menemenl
mkdir cube47
cd cube47
ln -sf ../run_template .
ln -sf ../ncep_rgau .


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
         'surForcT','oceTAUX','oceTAUY','surForcS'}
    tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	dimitri	1.59	Instructions for setting up a cube-sphere integration with sea-ice.
2	dimitri	1.65
3	dimitri	1.83	Forcing fields and other input files needed for the CS510
4			configuration can be obtained from
5			http://ecco2.org/products/model_setups/cs510.html
6
7	dimitri	1.72	=================
8			UPDATES
9
10	dimitri	1.87	January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
11
12			January 5, 2006: cube50, like cube48 but with snow advection
13	dimitri	1.86
14	dimitri	1.84	December 30, 2006: updates for cube49, the first
15			"blend" integration.
16
17	dimitri	1.81	December 11, 2006: preparing for cube47, same as cube43
18	dimitri	1.84	but with Arctic monthly river runoff climatology.
19	dimitri	1.81
20	dimitri	1.78	December 5, 2006: 216-CPU code for cube46
21			Changed diagnostics to accomodate JMCs latest and some
22			changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
23			to speed up code.
24	dimitri	1.77
25	dimitri	1.76	November 7, 2006: 216-CPU code for cube43
26			Bug fixes in growth.F routine and new set of diagnostics
27	dimitri	1.74
28	dimitri	1.72	October 15, 2006: 216-CPU code for cube40
29
30	dimitri	1.66	September 28, 2006: 216-CPU code for cube38
31
32			September 4, 2006
33	dimitri	1.65	Modified 3232615 experiments to use grid_cs32. files from
34			verification/tutorial_held_suarez_cs/input instead of
35			tile* files from verification/global_ocean.cs32x15/input
36
37	dimitri	1.72	August 8, 2006: 216-CPU code and input used for cube37
38	dimitri	1.64	using "June 10, 2006" MITgcm code.
39	dimitri	1.8
40	dimitri	1.67	for online T/S profile diagnostics all that is needed is
41			profiles_init_fixed
42			profiles_inloop
43			see pkg/ecco/ecco_cost_init_fixed.F
44			pkg/ecco/cost_averagesfields.F
45
46	dimitri	1.80	##########################################################################
47			##########################################################################
48			# Get forcing files, etc.
49			# Example below is for cube46 on /nobackup2a/menemenl
50
51			cd /nobackup2a/menemenl
52	dimitri	1.82	mkdir cube47
53			cd cube47
54	dimitri	1.80	ln -sf ../run_template .
55			ln -sf ../ncep_rgau .
56
57	dimitri	1.8
58			##########################################################################
59			##########################################################################
60	dimitri	1.14	# getting the code from anonymous CVS server
61	dimitri	1.68
62			bash or sh shell:
63			$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
64			$ cvs login
65			( enter the CVS password: "cvsanon" )
66
67			tcsh or csh shell:
68			$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
69			$ cvs login
70			( enter the CVS password: "cvsanon" )
71	dimitri	1.1
72	dimitri	1.38	cvs co MITgcm_contrib/high_res_cube/README_ice
73			cvs co MITgcm_contrib/high_res_cube/code-mods
74			cvs co MITgcm_contrib/high_res_cube/input
75			cvs co MITgcm_contrib/high_res_cube/results
76	dimitri	1.43	cvs co MITgcm_code
77			cvs co MITgcm/verification/global_ocean.cs32x15
78	dimitri	1.65	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
79	dimitri	1.14
80
81			##########################################################################
82			##########################################################################
83	dimitri	1.73	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
84
85			cd MITgcm/verification/global_ocean.cs32x15/code
86			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
87			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
88			\cp SIZE.h_216 SIZE.h
89			\cp packages.conf_hr packages.conf
90
91			cd ../build
92			\rm *
93	dimitri	1.79	../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
94	dimitri	1.73	make depend
95			make -j
96
97			cd ..
98			mkdir run
99			cd run
100			\rm *
101			\cp ../input/* .
102			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
103			ln -sf ../../../../run_template/* .
104			\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
105			\rm bathy_Hmin50.bin 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
106	dimitri	1.85	ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
107	dimitri	1.86	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
108	dimitri	1.73	\cp ../build/mitgcmuv .
109			qsub job_altix
110
111
112			##########################################################################
113			##########################################################################
114	dimitri	1.14	# 32326*15, 1-cpu cube sphere
115	dimitri	1.3
116	dimitri	1.1	cd MITgcm/verification/global_ocean.cs32x15/code
117	dimitri	1.8	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
118	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
119	dimitri	1.37	cd ../build
120			\rm *
121			../../../tools/genmake2 -mods=../code
122			make depend
123			make
124			cd ..
125			mkdir run
126			cd run
127			\rm *
128	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
129	dimitri	1.37	\cp ../input/* .
130			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
131			../build/mitgcmuv >& output.txt
132	dimitri	1.3
133	dimitri	1.37	comparison output is in:
134			../../../../MITgcm_contrib/high_res_cube/results/output.txt
135
136			to use matlab to look at the output
137			matlab
138
139	dimitri	1.77	for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
140			'surForcT','oceTAUX','oceTAUY','surForcS'}
141			tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
142	dimitri	1.37	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
143			end
144
145	dimitri	1.77	heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
146	dimitri	1.37	mask=0*heff; mask(find(heff>.001))=1;
147	dimitri	1.77	uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
148			vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
149	dimitri	1.37	clf
150	dimitri	1.55	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
151			subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
152			subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
153			subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
154	dimitri	1.37
155
156			##########################################################################
157			##########################################################################
158			# 32326*15, 17-tile, 1-cpu cube sphere experiment
159
160			cd MITgcm/verification/global_ocean.cs32x15/code
161			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
162			\cp ../code_alt/code.176t_8x4/* .
163	dimitri	1.25	cd ../build
164	dimitri	1.37	\rm *
165	dimitri	1.10	../../../tools/genmake2 -mods=../code
166	dimitri	1.1	make depend
167			make
168			cd ..
169			mkdir run
170			cd run
171	dimitri	1.37	\rm *
172	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
173	dimitri	1.8	\cp ../input/* .
174			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
175	dimitri	1.3	../build/mitgcmuv >& output.txt
176
177	dimitri	1.8
178			##########################################################################
179			##########################################################################
180	dimitri	1.56	# 32326*15, 2-cpu cube sphere on the altices with ifort
181	dimitri	1.8
182			cd MITgcm/verification/global_ocean.cs32x15/code
183			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
184	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
185	dimitri	1.8	\cp SIZE.h_mpi SIZE.h
186
187	dimitri	1.25	cd ../build
188	dimitri	1.14	\rm *
189	dimitri	1.54	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
190	dimitri	1.8	make depend
191	dimitri	1.41	make -j
192	dimitri	1.8
193			cd ..
194			mkdir run
195			cd run
196	dimitri	1.14	\rm *
197	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
198	dimitri	1.8	\cp ../input/* .
199			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
200			mpirun -np 2 ../build/mitgcmuv
201
202
203			##########################################################################
204			##########################################################################
205	dimitri	1.35	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
206	dimitri	1.36	# starting with pickup file from end of 1992
207	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
208
209			cd MITgcm/verification/global_ocean.cs32x15/code
210			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
211			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
212			\cp packages.conf_hr packages.conf
213
214			cd ../build
215			\rm *
216	dimitri	1.40	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
217	dimitri	1.35	make depend
218	dimitri	1.41	make -j
219	dimitri	1.35
220			cd ..
221			mkdir run
222			cd run
223			\rm *
224			\cp ../input/* .
225			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
226	dimitri	1.41	qsub job_altix92_54t
227	dimitri	1.35
228
229			##########################################################################
230			##########################################################################
231	dimitri	1.58	# 5105106*50, 1500-tile, 150-cpu, excludes land
232			# uses s1500t_17x51 configuration
233
234			cd MITgcm/verification/global_ocean.cs32x15/code
235			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
236			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
237			\cp SIZE.h_150 SIZE.h
238			\cp packages.conf_hr packages.conf
239
240			cd ../build
241			\rm *
242			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
243			make depend
244			make -j
245
246			cd ..
247			mkdir run
248			cd run
249			\rm *
250			\cp ../input/* .
251			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
252			ln -sf ../../../../run_template/* .
253			\rm pickup*
254	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
255			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
256	dimitri	1.58	\cp ../build/mitgcmuv mitgcmuv150
257			qsub job_altix150
258
259
260	dimitri	1.61	##########################################################################
261			##########################################################################
262			# 5105106*50, 1500-tile, 375-cpu, excludes land
263			# uses s1500t_17x51 configuration
264			# example for running on c17-c20 using arrayd
265
266			cd MITgcm/verification/global_ocean.cs32x15/code
267			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
268			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
269			\cp SIZE.h_375 SIZE.h
270			\cp packages.conf_hr packages.conf
271
272			cd ../build
273			\rm *
274			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
275			make depend
276			make -j
277
278			cd ..
279			mkdir run
280			cd run
281			\rm *
282			\cp ../input/* .
283			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
284			ln -sf ../../../../run_template/* .
285			\rm pickup*
286			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
287			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
288			\cp ../build/mitgcmuv .
289			job_c20_375cpu < /dev/null >&! output.run &
290
291	dimitri	1.58
292	dimitri	1.56	##########################################################################
293			##########################################################################
294			# 5105106*50, 1500-tile, 375-cpu, excludes land
295			# uses s1500t_17x51 configuration
296			# example for running on c17-c20 using arrayd
297
298			cd MITgcm/verification/global_ocean.cs32x15/code
299			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
300			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
301			\cp SIZE.h_375 SIZE.h
302			\cp packages.conf_hr packages.conf
303
304			cd ../build
305			\rm *
306			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
307			make depend
308			make -j
309
310			cd ..
311			mkdir run
312			cd run
313			\rm *
314			\cp ../input/* .
315			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
316			ln -sf ../../../../run_template/* .
317			\rm pickup*
318	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
319			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
320	dimitri	1.56	\cp ../build/mitgcmuv .
321	dimitri	1.57	job_c20_375cpu < /dev/null >&! output.run &
322
323
324			##########################################################################
325			##########################################################################
326			# 5105106*50, 1500-tile, 500-cpu, excludes land
327			# uses s1500t_17x51 configuration
328			# example for running on c17-c20 using arrayd
329
330			cd MITgcm/verification/global_ocean.cs32x15/code
331			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
332			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
333			\cp SIZE.h_500 SIZE.h
334			\cp packages.conf_hr packages.conf
335
336			cd ../build
337			\rm *
338			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
339			make depend
340			make -j
341
342			cd ..
343			mkdir run
344			cd run
345			\rm *
346			\cp ../input/* .
347			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
348			ln -sf ../../../../run_template/* .
349			\rm pickup*
350	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
351			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
352	dimitri	1.57	\cp ../build/mitgcmuv .
353			job_c19_500cpu < /dev/null >&! output.run &
354	dimitri	1.56
355
356	dimitri	1.60	##########################################################################
357			##########################################################################
358			# 5105106*50, 216-cpu cube sphere on cosmos
359
360			cd MITgcm/verification/global_ocean.cs32x15/code
361			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
362			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
363			\cp SIZE.h_216 SIZE.h
364			\cp packages.conf_hr packages.conf
365
366			module unload latest_intel80
367			module unload mpich-gm-intel80
368			module load latest_intel81
369			module load mpich-gm-intel81
370
371			cd ../build
372			\rm *
373			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
374			make depend
375			make -j
376
377			cd ..
378			mkdir run
379			cd run
380			\rm *
381			\cp ../input/* .
382			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
383			ln -sf ../../../../run_template/* .
384			\rm pickup*
385	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
386			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
387	dimitri	1.60	\cp ../build/mitgcmuv .
388			bsub < job_cosmos
389
390	dimitri	1.41
391	dimitri	1.42	##########################################################################
392			##########################################################################
393			# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
394			# requires input files in sudirectories run_template and ncep_rgau
395			# presently residing under orion:/tmp1/dmenem/cube
396	dimitri	1.41
397	dimitri	1.42	cd MITgcm/verification/global_ocean.cs32x15/code
398			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
399			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
400			\cp SIZE.h_54 SIZE.h
401			\cp packages.conf_hr packages.conf
402	dimitri	1.41
403	dimitri	1.42	cd ../build
404			\rm *
405			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
406			make depend
407			make -j
408	dimitri	1.41
409	dimitri	1.42	cd ..
410			mkdir run
411			cd run
412			\rm *
413			\cp ../input/* .
414			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
415			qsub job_orion
416	dimitri	1.35
417
418			##########################################################################
419			##########################################################################
420	dimitri	1.41	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
421	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
422			# presently residing under orion:/tmp1/dmenem/cube
423
424			cd MITgcm/verification/global_ocean.cs32x15/code
425			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
426	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
427			\cp SIZE.h_41 SIZE.h
428	dimitri	1.35	\cp packages.conf_hr packages.conf
429
430			cd ../build
431			\rm *
432	dimitri	1.41	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
433	dimitri	1.35	make depend
434	dimitri	1.41	make -j
435	dimitri	1.35
436			cd ..
437			mkdir run
438			cd run
439			\rm *
440			\cp ../input/* .
441			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
442	dimitri	1.41	qsub job_orion41
443	dimitri	1.9
444
445			##########################################################################
446			##########################################################################
447	dimitri	1.41	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
448	dimitri	1.17	# requires input files in sudirectories run_template and ncep_rgau
449	dimitri	1.41	# presently residing under orion:/tmp1/dmenem/cube
450	dimitri	1.9
451			cd MITgcm/verification/global_ocean.cs32x15/code
452			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
453	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
454			\cp SIZE.h_50 SIZE.h
455	dimitri	1.12	\cp packages.conf_hr packages.conf
456	dimitri	1.9
457	dimitri	1.25	cd ../build
458	dimitri	1.15	\rm *
459	dimitri	1.13	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
460	dimitri	1.9	make depend
461	dimitri	1.41	make -j
462	dimitri	1.9
463			cd ..
464			mkdir run
465			cd run
466	dimitri	1.15	\rm *
467			\cp ../input/* .
468			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
469	dimitri	1.41	qsub job_orion