Annotation of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

Forcing fields and other input files needed for the CS510
configuration can be obtained from
http://ecco2.org/products/model_setups/cs510.html

=================
UPDATES

January 5, 2006: cube50, same as cube48 but with snow advection

December 30, 2006: updates for cube49, the first
"blend" integration.

December 11, 2006: preparing for cube47, same as cube43
but with Arctic monthly river runoff climatology.

December 5, 2006: 216-CPU code for cube46
Changed diagnostics to accomodate JMCs latest and some
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
to speed up code.

November 7, 2006: 216-CPU code for cube43
Bug fixes in growth.F routine and new set of diagnostics

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F

##########################################################################
##########################################################################
# Get forcing files, etc.
# Example below is for cube46 on /nobackup2a/menemenl

cd /nobackup2a/menemenl
mkdir cube47
cd cube47
ln -sf ../run_template .
ln -sf ../ncep_rgau .


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
         'surForcT','oceTAUX','oceTAUY','surForcS'}
    tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	dimitri	1.59	Instructions for setting up a cube-sphere integration with sea-ice.
2	dimitri	1.65
3	dimitri	1.83	Forcing fields and other input files needed for the CS510
4			configuration can be obtained from
5			http://ecco2.org/products/model_setups/cs510.html
6
7	dimitri	1.72	=================
8			UPDATES
9
10	dimitri	1.86	January 5, 2006: cube50, same as cube48 but with snow advection
11
12	dimitri	1.84	December 30, 2006: updates for cube49, the first
13			"blend" integration.
14
15	dimitri	1.81	December 11, 2006: preparing for cube47, same as cube43
16	dimitri	1.84	but with Arctic monthly river runoff climatology.
17	dimitri	1.81
18	dimitri	1.78	December 5, 2006: 216-CPU code for cube46
19			Changed diagnostics to accomodate JMCs latest and some
20			changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
21			to speed up code.
22	dimitri	1.77
23	dimitri	1.76	November 7, 2006: 216-CPU code for cube43
24			Bug fixes in growth.F routine and new set of diagnostics
25	dimitri	1.74
26	dimitri	1.72	October 15, 2006: 216-CPU code for cube40
27
28	dimitri	1.66	September 28, 2006: 216-CPU code for cube38
29
30			September 4, 2006
31	dimitri	1.65	Modified 3232615 experiments to use grid_cs32. files from
32			verification/tutorial_held_suarez_cs/input instead of
33			tile* files from verification/global_ocean.cs32x15/input
34
35	dimitri	1.72	August 8, 2006: 216-CPU code and input used for cube37
36	dimitri	1.64	using "June 10, 2006" MITgcm code.
37	dimitri	1.8
38	dimitri	1.67	for online T/S profile diagnostics all that is needed is
39			profiles_init_fixed
40			profiles_inloop
41			see pkg/ecco/ecco_cost_init_fixed.F
42			pkg/ecco/cost_averagesfields.F
43
44	dimitri	1.80	##########################################################################
45			##########################################################################
46			# Get forcing files, etc.
47			# Example below is for cube46 on /nobackup2a/menemenl
48
49			cd /nobackup2a/menemenl
50	dimitri	1.82	mkdir cube47
51			cd cube47
52	dimitri	1.80	ln -sf ../run_template .
53			ln -sf ../ncep_rgau .
54
55	dimitri	1.8
56			##########################################################################
57			##########################################################################
58	dimitri	1.14	# getting the code from anonymous CVS server
59	dimitri	1.68
60			bash or sh shell:
61			$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
62			$ cvs login
63			( enter the CVS password: "cvsanon" )
64
65			tcsh or csh shell:
66			$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
67			$ cvs login
68			( enter the CVS password: "cvsanon" )
69	dimitri	1.1
70	dimitri	1.38	cvs co MITgcm_contrib/high_res_cube/README_ice
71			cvs co MITgcm_contrib/high_res_cube/code-mods
72			cvs co MITgcm_contrib/high_res_cube/input
73			cvs co MITgcm_contrib/high_res_cube/results
74	dimitri	1.43	cvs co MITgcm_code
75			cvs co MITgcm/verification/global_ocean.cs32x15
76	dimitri	1.65	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
77	dimitri	1.14
78
79			##########################################################################
80			##########################################################################
81	dimitri	1.73	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
82
83			cd MITgcm/verification/global_ocean.cs32x15/code
84			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
85			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
86			\cp SIZE.h_216 SIZE.h
87			\cp packages.conf_hr packages.conf
88
89			cd ../build
90			\rm *
91	dimitri	1.79	../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
92	dimitri	1.73	make depend
93			make -j
94
95			cd ..
96			mkdir run
97			cd run
98			\rm *
99			\cp ../input/* .
100			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
101			ln -sf ../../../../run_template/* .
102			\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
103			\rm bathy_Hmin50.bin 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
104	dimitri	1.85	ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
105	dimitri	1.86	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
106	dimitri	1.73	\cp ../build/mitgcmuv .
107			qsub job_altix
108
109
110			##########################################################################
111			##########################################################################
112	dimitri	1.14	# 32326*15, 1-cpu cube sphere
113	dimitri	1.3
114	dimitri	1.1	cd MITgcm/verification/global_ocean.cs32x15/code
115	dimitri	1.8	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
116	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
117	dimitri	1.37	cd ../build
118			\rm *
119			../../../tools/genmake2 -mods=../code
120			make depend
121			make
122			cd ..
123			mkdir run
124			cd run
125			\rm *
126	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
127	dimitri	1.37	\cp ../input/* .
128			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
129			../build/mitgcmuv >& output.txt
130	dimitri	1.3
131	dimitri	1.37	comparison output is in:
132			../../../../MITgcm_contrib/high_res_cube/results/output.txt
133
134			to use matlab to look at the output
135			matlab
136
137	dimitri	1.77	for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
138			'surForcT','oceTAUX','oceTAUY','surForcS'}
139			tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
140	dimitri	1.37	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
141			end
142
143	dimitri	1.77	heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
144	dimitri	1.37	mask=0*heff; mask(find(heff>.001))=1;
145	dimitri	1.77	uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
146			vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
147	dimitri	1.37	clf
148	dimitri	1.55	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
149			subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
150			subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
151			subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
152	dimitri	1.37
153
154			##########################################################################
155			##########################################################################
156			# 32326*15, 17-tile, 1-cpu cube sphere experiment
157
158			cd MITgcm/verification/global_ocean.cs32x15/code
159			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
160			\cp ../code_alt/code.176t_8x4/* .
161	dimitri	1.25	cd ../build
162	dimitri	1.37	\rm *
163	dimitri	1.10	../../../tools/genmake2 -mods=../code
164	dimitri	1.1	make depend
165			make
166			cd ..
167			mkdir run
168			cd run
169	dimitri	1.37	\rm *
170	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
171	dimitri	1.8	\cp ../input/* .
172			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
173	dimitri	1.3	../build/mitgcmuv >& output.txt
174
175	dimitri	1.8
176			##########################################################################
177			##########################################################################
178	dimitri	1.56	# 32326*15, 2-cpu cube sphere on the altices with ifort
179	dimitri	1.8
180			cd MITgcm/verification/global_ocean.cs32x15/code
181			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
182	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
183	dimitri	1.8	\cp SIZE.h_mpi SIZE.h
184
185	dimitri	1.25	cd ../build
186	dimitri	1.14	\rm *
187	dimitri	1.54	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
188	dimitri	1.8	make depend
189	dimitri	1.41	make -j
190	dimitri	1.8
191			cd ..
192			mkdir run
193			cd run
194	dimitri	1.14	\rm *
195	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
196	dimitri	1.8	\cp ../input/* .
197			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
198			mpirun -np 2 ../build/mitgcmuv
199
200
201			##########################################################################
202			##########################################################################
203	dimitri	1.35	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
204	dimitri	1.36	# starting with pickup file from end of 1992
205	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
206
207			cd MITgcm/verification/global_ocean.cs32x15/code
208			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
209			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
210			\cp packages.conf_hr packages.conf
211
212			cd ../build
213			\rm *
214	dimitri	1.40	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
215	dimitri	1.35	make depend
216	dimitri	1.41	make -j
217	dimitri	1.35
218			cd ..
219			mkdir run
220			cd run
221			\rm *
222			\cp ../input/* .
223			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
224	dimitri	1.41	qsub job_altix92_54t
225	dimitri	1.35
226
227			##########################################################################
228			##########################################################################
229	dimitri	1.58	# 5105106*50, 1500-tile, 150-cpu, excludes land
230			# uses s1500t_17x51 configuration
231
232			cd MITgcm/verification/global_ocean.cs32x15/code
233			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
234			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
235			\cp SIZE.h_150 SIZE.h
236			\cp packages.conf_hr packages.conf
237
238			cd ../build
239			\rm *
240			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
241			make depend
242			make -j
243
244			cd ..
245			mkdir run
246			cd run
247			\rm *
248			\cp ../input/* .
249			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
250			ln -sf ../../../../run_template/* .
251			\rm pickup*
252	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
253			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
254	dimitri	1.58	\cp ../build/mitgcmuv mitgcmuv150
255			qsub job_altix150
256
257
258	dimitri	1.61	##########################################################################
259			##########################################################################
260			# 5105106*50, 1500-tile, 375-cpu, excludes land
261			# uses s1500t_17x51 configuration
262			# example for running on c17-c20 using arrayd
263
264			cd MITgcm/verification/global_ocean.cs32x15/code
265			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
266			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
267			\cp SIZE.h_375 SIZE.h
268			\cp packages.conf_hr packages.conf
269
270			cd ../build
271			\rm *
272			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
273			make depend
274			make -j
275
276			cd ..
277			mkdir run
278			cd run
279			\rm *
280			\cp ../input/* .
281			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
282			ln -sf ../../../../run_template/* .
283			\rm pickup*
284			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
285			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
286			\cp ../build/mitgcmuv .
287			job_c20_375cpu < /dev/null >&! output.run &
288
289	dimitri	1.58
290	dimitri	1.56	##########################################################################
291			##########################################################################
292			# 5105106*50, 1500-tile, 375-cpu, excludes land
293			# uses s1500t_17x51 configuration
294			# example for running on c17-c20 using arrayd
295
296			cd MITgcm/verification/global_ocean.cs32x15/code
297			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
298			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
299			\cp SIZE.h_375 SIZE.h
300			\cp packages.conf_hr packages.conf
301
302			cd ../build
303			\rm *
304			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
305			make depend
306			make -j
307
308			cd ..
309			mkdir run
310			cd run
311			\rm *
312			\cp ../input/* .
313			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
314			ln -sf ../../../../run_template/* .
315			\rm pickup*
316	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
317			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
318	dimitri	1.56	\cp ../build/mitgcmuv .
319	dimitri	1.57	job_c20_375cpu < /dev/null >&! output.run &
320
321
322			##########################################################################
323			##########################################################################
324			# 5105106*50, 1500-tile, 500-cpu, excludes land
325			# uses s1500t_17x51 configuration
326			# example for running on c17-c20 using arrayd
327
328			cd MITgcm/verification/global_ocean.cs32x15/code
329			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
330			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
331			\cp SIZE.h_500 SIZE.h
332			\cp packages.conf_hr packages.conf
333
334			cd ../build
335			\rm *
336			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
337			make depend
338			make -j
339
340			cd ..
341			mkdir run
342			cd run
343			\rm *
344			\cp ../input/* .
345			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
346			ln -sf ../../../../run_template/* .
347			\rm pickup*
348	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
349			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
350	dimitri	1.57	\cp ../build/mitgcmuv .
351			job_c19_500cpu < /dev/null >&! output.run &
352	dimitri	1.56
353
354	dimitri	1.60	##########################################################################
355			##########################################################################
356			# 5105106*50, 216-cpu cube sphere on cosmos
357
358			cd MITgcm/verification/global_ocean.cs32x15/code
359			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
360			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
361			\cp SIZE.h_216 SIZE.h
362			\cp packages.conf_hr packages.conf
363
364			module unload latest_intel80
365			module unload mpich-gm-intel80
366			module load latest_intel81
367			module load mpich-gm-intel81
368
369			cd ../build
370			\rm *
371			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
372			make depend
373			make -j
374
375			cd ..
376			mkdir run
377			cd run
378			\rm *
379			\cp ../input/* .
380			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
381			ln -sf ../../../../run_template/* .
382			\rm pickup*
383	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
384			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
385	dimitri	1.60	\cp ../build/mitgcmuv .
386			bsub < job_cosmos
387
388	dimitri	1.41
389	dimitri	1.42	##########################################################################
390			##########################################################################
391			# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
392			# requires input files in sudirectories run_template and ncep_rgau
393			# presently residing under orion:/tmp1/dmenem/cube
394	dimitri	1.41
395	dimitri	1.42	cd MITgcm/verification/global_ocean.cs32x15/code
396			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
397			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
398			\cp SIZE.h_54 SIZE.h
399			\cp packages.conf_hr packages.conf
400	dimitri	1.41
401	dimitri	1.42	cd ../build
402			\rm *
403			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
404			make depend
405			make -j
406	dimitri	1.41
407	dimitri	1.42	cd ..
408			mkdir run
409			cd run
410			\rm *
411			\cp ../input/* .
412			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
413			qsub job_orion
414	dimitri	1.35
415
416			##########################################################################
417			##########################################################################
418	dimitri	1.41	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
419	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
420			# presently residing under orion:/tmp1/dmenem/cube
421
422			cd MITgcm/verification/global_ocean.cs32x15/code
423			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
424	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
425			\cp SIZE.h_41 SIZE.h
426	dimitri	1.35	\cp packages.conf_hr packages.conf
427
428			cd ../build
429			\rm *
430	dimitri	1.41	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
431	dimitri	1.35	make depend
432	dimitri	1.41	make -j
433	dimitri	1.35
434			cd ..
435			mkdir run
436			cd run
437			\rm *
438			\cp ../input/* .
439			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
440	dimitri	1.41	qsub job_orion41
441	dimitri	1.9
442
443			##########################################################################
444			##########################################################################
445	dimitri	1.41	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
446	dimitri	1.17	# requires input files in sudirectories run_template and ncep_rgau
447	dimitri	1.41	# presently residing under orion:/tmp1/dmenem/cube
448	dimitri	1.9
449			cd MITgcm/verification/global_ocean.cs32x15/code
450			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
451	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
452			\cp SIZE.h_50 SIZE.h
453	dimitri	1.12	\cp packages.conf_hr packages.conf
454	dimitri	1.9
455	dimitri	1.25	cd ../build
456	dimitri	1.15	\rm *
457	dimitri	1.13	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
458	dimitri	1.9	make depend
459	dimitri	1.41	make -j
460	dimitri	1.9
461			cd ..
462			mkdir run
463			cd run
464	dimitri	1.15	\rm *
465			\cp ../input/* .
466			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
467	dimitri	1.41	qsub job_orion