Annotation of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

Forcing fields and other input files needed for the CS510
configuration can be obtained from
http://ecco2.org/products/model_setups/cs510.html

=================
UPDATES

December 30, 2006: updates for cube49, the first
"blend" integration.

December 11, 2006: preparing for cube47, same as cube43
but with Arctic monthly river runoff climatology.

December 5, 2006: 216-CPU code for cube46
Changed diagnostics to accomodate JMCs latest and some
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
to speed up code.

November 7, 2006: 216-CPU code for cube43
Bug fixes in growth.F routine and new set of diagnostics

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F

##########################################################################
##########################################################################
# Get forcing files, etc.
# Example below is for cube46 on /nobackup2a/menemenl

cd /nobackup2a/menemenl
mkdir cube47
cd cube47
ln -sf ../run_template .
ln -sf ../ncep_rgau .


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
         'surForcT','oceTAUX','oceTAUY','surForcS'}
    tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	dimitri	1.59	Instructions for setting up a cube-sphere integration with sea-ice.
2	dimitri	1.65
3	dimitri	1.83	Forcing fields and other input files needed for the CS510
4			configuration can be obtained from
5			http://ecco2.org/products/model_setups/cs510.html
6
7	dimitri	1.72	=================
8			UPDATES
9
10	dimitri	1.84	December 30, 2006: updates for cube49, the first
11			"blend" integration.
12
13	dimitri	1.81	December 11, 2006: preparing for cube47, same as cube43
14	dimitri	1.84	but with Arctic monthly river runoff climatology.
15	dimitri	1.81
16	dimitri	1.78	December 5, 2006: 216-CPU code for cube46
17			Changed diagnostics to accomodate JMCs latest and some
18			changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
19			to speed up code.
20	dimitri	1.77
21	dimitri	1.76	November 7, 2006: 216-CPU code for cube43
22			Bug fixes in growth.F routine and new set of diagnostics
23	dimitri	1.74
24	dimitri	1.72	October 15, 2006: 216-CPU code for cube40
25
26	dimitri	1.66	September 28, 2006: 216-CPU code for cube38
27
28			September 4, 2006
29	dimitri	1.65	Modified 3232615 experiments to use grid_cs32. files from
30			verification/tutorial_held_suarez_cs/input instead of
31			tile* files from verification/global_ocean.cs32x15/input
32
33	dimitri	1.72	August 8, 2006: 216-CPU code and input used for cube37
34	dimitri	1.64	using "June 10, 2006" MITgcm code.
35	dimitri	1.8
36	dimitri	1.67	for online T/S profile diagnostics all that is needed is
37			profiles_init_fixed
38			profiles_inloop
39			see pkg/ecco/ecco_cost_init_fixed.F
40			pkg/ecco/cost_averagesfields.F
41
42	dimitri	1.80	##########################################################################
43			##########################################################################
44			# Get forcing files, etc.
45			# Example below is for cube46 on /nobackup2a/menemenl
46
47			cd /nobackup2a/menemenl
48	dimitri	1.82	mkdir cube47
49			cd cube47
50	dimitri	1.80	ln -sf ../run_template .
51			ln -sf ../ncep_rgau .
52
53	dimitri	1.8
54			##########################################################################
55			##########################################################################
56	dimitri	1.14	# getting the code from anonymous CVS server
57	dimitri	1.68
58			bash or sh shell:
59			$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
60			$ cvs login
61			( enter the CVS password: "cvsanon" )
62
63			tcsh or csh shell:
64			$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
65			$ cvs login
66			( enter the CVS password: "cvsanon" )
67	dimitri	1.1
68	dimitri	1.38	cvs co MITgcm_contrib/high_res_cube/README_ice
69			cvs co MITgcm_contrib/high_res_cube/code-mods
70			cvs co MITgcm_contrib/high_res_cube/input
71			cvs co MITgcm_contrib/high_res_cube/results
72	dimitri	1.43	cvs co MITgcm_code
73			cvs co MITgcm/verification/global_ocean.cs32x15
74	dimitri	1.65	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
75	dimitri	1.14
76
77			##########################################################################
78			##########################################################################
79	dimitri	1.73	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
80
81			cd MITgcm/verification/global_ocean.cs32x15/code
82			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
83			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
84			\cp SIZE.h_216 SIZE.h
85			\cp packages.conf_hr packages.conf
86
87			cd ../build
88			\rm *
89	dimitri	1.79	../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
90	dimitri	1.73	make depend
91			make -j
92
93			cd ..
94			mkdir run
95			cd run
96			\rm *
97			\cp ../input/* .
98			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
99			ln -sf ../../../../run_template/* .
100			\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
101			\rm bathy_Hmin50.bin 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
102			ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
103			ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
104			\cp ../build/mitgcmuv .
105			qsub job_altix
106
107
108			##########################################################################
109			##########################################################################
110	dimitri	1.14	# 32326*15, 1-cpu cube sphere
111	dimitri	1.3
112	dimitri	1.1	cd MITgcm/verification/global_ocean.cs32x15/code
113	dimitri	1.8	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
114	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
115	dimitri	1.37	cd ../build
116			\rm *
117			../../../tools/genmake2 -mods=../code
118			make depend
119			make
120			cd ..
121			mkdir run
122			cd run
123			\rm *
124	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
125	dimitri	1.37	\cp ../input/* .
126			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
127			../build/mitgcmuv >& output.txt
128	dimitri	1.3
129	dimitri	1.37	comparison output is in:
130			../../../../MITgcm_contrib/high_res_cube/results/output.txt
131
132			to use matlab to look at the output
133			matlab
134
135	dimitri	1.77	for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
136			'surForcT','oceTAUX','oceTAUY','surForcS'}
137			tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
138	dimitri	1.37	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
139			end
140
141	dimitri	1.77	heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
142	dimitri	1.37	mask=0*heff; mask(find(heff>.001))=1;
143	dimitri	1.77	uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
144			vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
145	dimitri	1.37	clf
146	dimitri	1.55	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
147			subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
148			subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
149			subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
150	dimitri	1.37
151
152			##########################################################################
153			##########################################################################
154			# 32326*15, 17-tile, 1-cpu cube sphere experiment
155
156			cd MITgcm/verification/global_ocean.cs32x15/code
157			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
158			\cp ../code_alt/code.176t_8x4/* .
159	dimitri	1.25	cd ../build
160	dimitri	1.37	\rm *
161	dimitri	1.10	../../../tools/genmake2 -mods=../code
162	dimitri	1.1	make depend
163			make
164			cd ..
165			mkdir run
166			cd run
167	dimitri	1.37	\rm *
168	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
169	dimitri	1.8	\cp ../input/* .
170			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
171	dimitri	1.3	../build/mitgcmuv >& output.txt
172
173	dimitri	1.8
174			##########################################################################
175			##########################################################################
176	dimitri	1.56	# 32326*15, 2-cpu cube sphere on the altices with ifort
177	dimitri	1.8
178			cd MITgcm/verification/global_ocean.cs32x15/code
179			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
180	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
181	dimitri	1.8	\cp SIZE.h_mpi SIZE.h
182
183	dimitri	1.25	cd ../build
184	dimitri	1.14	\rm *
185	dimitri	1.54	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
186	dimitri	1.8	make depend
187	dimitri	1.41	make -j
188	dimitri	1.8
189			cd ..
190			mkdir run
191			cd run
192	dimitri	1.14	\rm *
193	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
194	dimitri	1.8	\cp ../input/* .
195			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
196			mpirun -np 2 ../build/mitgcmuv
197
198
199			##########################################################################
200			##########################################################################
201	dimitri	1.35	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
202	dimitri	1.36	# starting with pickup file from end of 1992
203	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
204
205			cd MITgcm/verification/global_ocean.cs32x15/code
206			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
207			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
208			\cp packages.conf_hr packages.conf
209
210			cd ../build
211			\rm *
212	dimitri	1.40	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
213	dimitri	1.35	make depend
214	dimitri	1.41	make -j
215	dimitri	1.35
216			cd ..
217			mkdir run
218			cd run
219			\rm *
220			\cp ../input/* .
221			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
222	dimitri	1.41	qsub job_altix92_54t
223	dimitri	1.35
224
225			##########################################################################
226			##########################################################################
227	dimitri	1.58	# 5105106*50, 1500-tile, 150-cpu, excludes land
228			# uses s1500t_17x51 configuration
229
230			cd MITgcm/verification/global_ocean.cs32x15/code
231			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
232			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
233			\cp SIZE.h_150 SIZE.h
234			\cp packages.conf_hr packages.conf
235
236			cd ../build
237			\rm *
238			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
239			make depend
240			make -j
241
242			cd ..
243			mkdir run
244			cd run
245			\rm *
246			\cp ../input/* .
247			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
248			ln -sf ../../../../run_template/* .
249			\rm pickup*
250	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
251			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
252	dimitri	1.58	\cp ../build/mitgcmuv mitgcmuv150
253			qsub job_altix150
254
255
256	dimitri	1.61	##########################################################################
257			##########################################################################
258			# 5105106*50, 1500-tile, 375-cpu, excludes land
259			# uses s1500t_17x51 configuration
260			# example for running on c17-c20 using arrayd
261
262			cd MITgcm/verification/global_ocean.cs32x15/code
263			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
264			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
265			\cp SIZE.h_375 SIZE.h
266			\cp packages.conf_hr packages.conf
267
268			cd ../build
269			\rm *
270			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
271			make depend
272			make -j
273
274			cd ..
275			mkdir run
276			cd run
277			\rm *
278			\cp ../input/* .
279			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
280			ln -sf ../../../../run_template/* .
281			\rm pickup*
282			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
283			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
284			\cp ../build/mitgcmuv .
285			job_c20_375cpu < /dev/null >&! output.run &
286
287	dimitri	1.58
288	dimitri	1.56	##########################################################################
289			##########################################################################
290			# 5105106*50, 1500-tile, 375-cpu, excludes land
291			# uses s1500t_17x51 configuration
292			# example for running on c17-c20 using arrayd
293
294			cd MITgcm/verification/global_ocean.cs32x15/code
295			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
296			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
297			\cp SIZE.h_375 SIZE.h
298			\cp packages.conf_hr packages.conf
299
300			cd ../build
301			\rm *
302			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
303			make depend
304			make -j
305
306			cd ..
307			mkdir run
308			cd run
309			\rm *
310			\cp ../input/* .
311			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
312			ln -sf ../../../../run_template/* .
313			\rm pickup*
314	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
315			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
316	dimitri	1.56	\cp ../build/mitgcmuv .
317	dimitri	1.57	job_c20_375cpu < /dev/null >&! output.run &
318
319
320			##########################################################################
321			##########################################################################
322			# 5105106*50, 1500-tile, 500-cpu, excludes land
323			# uses s1500t_17x51 configuration
324			# example for running on c17-c20 using arrayd
325
326			cd MITgcm/verification/global_ocean.cs32x15/code
327			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
328			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
329			\cp SIZE.h_500 SIZE.h
330			\cp packages.conf_hr packages.conf
331
332			cd ../build
333			\rm *
334			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
335			make depend
336			make -j
337
338			cd ..
339			mkdir run
340			cd run
341			\rm *
342			\cp ../input/* .
343			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
344			ln -sf ../../../../run_template/* .
345			\rm pickup*
346	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
347			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
348	dimitri	1.57	\cp ../build/mitgcmuv .
349			job_c19_500cpu < /dev/null >&! output.run &
350	dimitri	1.56
351
352	dimitri	1.60	##########################################################################
353			##########################################################################
354			# 5105106*50, 216-cpu cube sphere on cosmos
355
356			cd MITgcm/verification/global_ocean.cs32x15/code
357			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
358			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
359			\cp SIZE.h_216 SIZE.h
360			\cp packages.conf_hr packages.conf
361
362			module unload latest_intel80
363			module unload mpich-gm-intel80
364			module load latest_intel81
365			module load mpich-gm-intel81
366
367			cd ../build
368			\rm *
369			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
370			make depend
371			make -j
372
373			cd ..
374			mkdir run
375			cd run
376			\rm *
377			\cp ../input/* .
378			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
379			ln -sf ../../../../run_template/* .
380			\rm pickup*
381	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
382			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
383	dimitri	1.60	\cp ../build/mitgcmuv .
384			bsub < job_cosmos
385
386	dimitri	1.41
387	dimitri	1.42	##########################################################################
388			##########################################################################
389			# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
390			# requires input files in sudirectories run_template and ncep_rgau
391			# presently residing under orion:/tmp1/dmenem/cube
392	dimitri	1.41
393	dimitri	1.42	cd MITgcm/verification/global_ocean.cs32x15/code
394			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
395			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
396			\cp SIZE.h_54 SIZE.h
397			\cp packages.conf_hr packages.conf
398	dimitri	1.41
399	dimitri	1.42	cd ../build
400			\rm *
401			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
402			make depend
403			make -j
404	dimitri	1.41
405	dimitri	1.42	cd ..
406			mkdir run
407			cd run
408			\rm *
409			\cp ../input/* .
410			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
411			qsub job_orion
412	dimitri	1.35
413
414			##########################################################################
415			##########################################################################
416	dimitri	1.41	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
417	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
418			# presently residing under orion:/tmp1/dmenem/cube
419
420			cd MITgcm/verification/global_ocean.cs32x15/code
421			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
422	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
423			\cp SIZE.h_41 SIZE.h
424	dimitri	1.35	\cp packages.conf_hr packages.conf
425
426			cd ../build
427			\rm *
428	dimitri	1.41	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
429	dimitri	1.35	make depend
430	dimitri	1.41	make -j
431	dimitri	1.35
432			cd ..
433			mkdir run
434			cd run
435			\rm *
436			\cp ../input/* .
437			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
438	dimitri	1.41	qsub job_orion41
439	dimitri	1.9
440
441			##########################################################################
442			##########################################################################
443	dimitri	1.41	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
444	dimitri	1.17	# requires input files in sudirectories run_template and ncep_rgau
445	dimitri	1.41	# presently residing under orion:/tmp1/dmenem/cube
446	dimitri	1.9
447			cd MITgcm/verification/global_ocean.cs32x15/code
448			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
449	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
450			\cp SIZE.h_50 SIZE.h
451	dimitri	1.12	\cp packages.conf_hr packages.conf
452	dimitri	1.9
453	dimitri	1.25	cd ../build
454	dimitri	1.15	\rm *
455	dimitri	1.13	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
456	dimitri	1.9	make depend
457	dimitri	1.41	make -j
458	dimitri	1.9
459			cd ..
460			mkdir run
461			cd run
462	dimitri	1.15	\rm *
463			\cp ../input/* .
464			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
465	dimitri	1.41	qsub job_orion