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Revision 1.78 - (hide annotations) (download)
Tue Dec 5 20:46:48 2006 UTC (18 years, 7 months ago) by dimitri
Branch: MAIN
Changes since 1.77: +4 -2 lines 
preparing for cube46
1 dimitri 1.59 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.65
3 dimitri 1.72 =================
4     UPDATES
5    
6 dimitri 1.78 December 5, 2006: 216-CPU code for cube46
7     Changed diagnostics to accomodate JMCs latest and some
8     changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
9     to speed up code.
10 dimitri 1.77
11 dimitri 1.76 November 7, 2006: 216-CPU code for cube43
12     Bug fixes in growth.F routine and new set of diagnostics
13 dimitri 1.74
14 dimitri 1.72 October 15, 2006: 216-CPU code for cube40
15    
16 dimitri 1.66 September 28, 2006: 216-CPU code for cube38
17    
18     September 4, 2006
19 dimitri 1.65 Modified 32*32*6*15 experiments to use grid_cs32.* files from
20     verification/tutorial_held_suarez_cs/input instead of
21     tile* files from verification/global_ocean.cs32x15/input
22    
23 dimitri 1.72 August 8, 2006: 216-CPU code and input used for cube37
24 dimitri 1.64 using "June 10, 2006" MITgcm code.
25 dimitri 1.8
26 dimitri 1.67 for online T/S profile diagnostics all that is needed is
27     profiles_init_fixed
28     profiles_inloop
29     see pkg/ecco/ecco_cost_init_fixed.F
30     pkg/ecco/cost_averagesfields.F
31    
32 dimitri 1.8
33     ##########################################################################
34     ##########################################################################
35 dimitri 1.14 # getting the code from anonymous CVS server
36 dimitri 1.68 #
37    
38     bash or sh shell:
39     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
40     $ cvs login
41     ( enter the CVS password: "cvsanon" )
42    
43     tcsh or csh shell:
44     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
45     $ cvs login
46     ( enter the CVS password: "cvsanon" )
47 dimitri 1.1
48 dimitri 1.38 cvs co MITgcm_contrib/high_res_cube/README_ice
49     cvs co MITgcm_contrib/high_res_cube/code-mods
50     cvs co MITgcm_contrib/high_res_cube/input
51     cvs co MITgcm_contrib/high_res_cube/results
52 dimitri 1.43 cvs co MITgcm_code
53     cvs co MITgcm/verification/global_ocean.cs32x15
54 dimitri 1.65 cvs co MITgcm/verification/tutorial_held_suarez_cs/input
55 dimitri 1.14
56    
57     ##########################################################################
58     ##########################################################################
59 dimitri 1.73 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
60     # requires input files in sudirectories run_template and ncep_rgau
61     # these can be obained from lou:/u/menemenl/cube
62    
63     cd MITgcm/verification/global_ocean.cs32x15/code
64     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
65     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
66     \cp SIZE.h_216 SIZE.h
67     \cp packages.conf_hr packages.conf
68    
69     cd ../build
70     \rm *
71     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
72     make depend
73     make -j
74    
75     cd ..
76     mkdir run
77     cd run
78     \rm *
79     \cp ../input/* .
80     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
81     ln -sf ../../../../run_template/* .
82     \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
83     \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
84     ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
85     ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
86     \cp ../build/mitgcmuv .
87     qsub job_altix
88    
89    
90     ##########################################################################
91     ##########################################################################
92 dimitri 1.14 # 32*32*6*15, 1-cpu cube sphere
93 dimitri 1.3
94 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
95 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
96 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
97 dimitri 1.37 cd ../build
98     \rm *
99     ../../../tools/genmake2 -mods=../code
100     make depend
101     make
102     cd ..
103     mkdir run
104     cd run
105     \rm *
106 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
107 dimitri 1.37 \cp ../input/* .
108     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
109     ../build/mitgcmuv >& output.txt
110 dimitri 1.3
111 dimitri 1.37 comparison output is in:
112     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
113    
114     to use matlab to look at the output
115     matlab
116    
117 dimitri 1.77 for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
118     'surForcT','oceTAUX','oceTAUY','surForcS'}
119     tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
120 dimitri 1.37 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
121     end
122    
123 dimitri 1.77 heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
124 dimitri 1.37 mask=0*heff; mask(find(heff>.001))=1;
125 dimitri 1.77 uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
126     vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
127 dimitri 1.37 clf
128 dimitri 1.55 subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
129     subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
130     subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
131     subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
132 dimitri 1.37
133    
134     ##########################################################################
135     ##########################################################################
136     # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
137    
138     cd MITgcm/verification/global_ocean.cs32x15/code
139     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
140     \cp ../code_alt/code.176t_8x4/* .
141 dimitri 1.25 cd ../build
142 dimitri 1.37 \rm *
143 dimitri 1.10 ../../../tools/genmake2 -mods=../code
144 dimitri 1.1 make depend
145     make
146     cd ..
147     mkdir run
148     cd run
149 dimitri 1.37 \rm *
150 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
151 dimitri 1.8 \cp ../input/* .
152     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
153 dimitri 1.3 ../build/mitgcmuv >& output.txt
154    
155 dimitri 1.8
156     ##########################################################################
157     ##########################################################################
158 dimitri 1.56 # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
159 dimitri 1.8
160     cd MITgcm/verification/global_ocean.cs32x15/code
161     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
162 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
163 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
164    
165 dimitri 1.25 cd ../build
166 dimitri 1.14 \rm *
167 dimitri 1.54 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
168 dimitri 1.8 make depend
169 dimitri 1.41 make -j
170 dimitri 1.8
171     cd ..
172     mkdir run
173     cd run
174 dimitri 1.14 \rm *
175 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
176 dimitri 1.8 \cp ../input/* .
177     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
178     mpirun -np 2 ../build/mitgcmuv
179    
180    
181     ##########################################################################
182     ##########################################################################
183 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
184 dimitri 1.36 # starting with pickup file from end of 1992
185 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
186    
187     cd MITgcm/verification/global_ocean.cs32x15/code
188     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
189     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
190     \cp packages.conf_hr packages.conf
191    
192     cd ../build
193     \rm *
194 dimitri 1.40 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
195 dimitri 1.35 make depend
196 dimitri 1.41 make -j
197 dimitri 1.35
198     cd ..
199     mkdir run
200     cd run
201     \rm *
202     \cp ../input/* .
203     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
204 dimitri 1.41 qsub job_altix92_54t
205 dimitri 1.35
206    
207     ##########################################################################
208     ##########################################################################
209 dimitri 1.58 # 510*510*6*50, 1500-tile, 150-cpu, excludes land
210     # uses s1500t_17x51 configuration
211    
212     cd MITgcm/verification/global_ocean.cs32x15/code
213     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
214     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
215     \cp SIZE.h_150 SIZE.h
216     \cp packages.conf_hr packages.conf
217    
218     cd ../build
219     \rm *
220     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
221     make depend
222     make -j
223    
224     cd ..
225     mkdir run
226     cd run
227     \rm *
228     \cp ../input/* .
229     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
230     ln -sf ../../../../run_template/* .
231     \rm pickup*
232 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
233     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
234 dimitri 1.58 \cp ../build/mitgcmuv mitgcmuv150
235     qsub job_altix150
236    
237    
238 dimitri 1.61 ##########################################################################
239     ##########################################################################
240     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
241     # uses s1500t_17x51 configuration
242     # example for running on c17-c20 using arrayd
243    
244     cd MITgcm/verification/global_ocean.cs32x15/code
245     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
246     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
247     \cp SIZE.h_375 SIZE.h
248     \cp packages.conf_hr packages.conf
249    
250     cd ../build
251     \rm *
252     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
253     make depend
254     make -j
255    
256     cd ..
257     mkdir run
258     cd run
259     \rm *
260     \cp ../input/* .
261     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
262     ln -sf ../../../../run_template/* .
263     \rm pickup*
264     ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
265     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
266     \cp ../build/mitgcmuv .
267     job_c20_375cpu < /dev/null >&! output.run &
268    
269 dimitri 1.58
270 dimitri 1.56 ##########################################################################
271     ##########################################################################
272     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
273     # uses s1500t_17x51 configuration
274     # example for running on c17-c20 using arrayd
275    
276     cd MITgcm/verification/global_ocean.cs32x15/code
277     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
278     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
279     \cp SIZE.h_375 SIZE.h
280     \cp packages.conf_hr packages.conf
281    
282     cd ../build
283     \rm *
284     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
285     make depend
286     make -j
287    
288     cd ..
289     mkdir run
290     cd run
291     \rm *
292     \cp ../input/* .
293     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
294     ln -sf ../../../../run_template/* .
295     \rm pickup*
296 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
297     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
298 dimitri 1.56 \cp ../build/mitgcmuv .
299 dimitri 1.57 job_c20_375cpu < /dev/null >&! output.run &
300    
301    
302     ##########################################################################
303     ##########################################################################
304     # 510*510*6*50, 1500-tile, 500-cpu, excludes land
305     # uses s1500t_17x51 configuration
306     # example for running on c17-c20 using arrayd
307    
308     cd MITgcm/verification/global_ocean.cs32x15/code
309     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
310     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
311     \cp SIZE.h_500 SIZE.h
312     \cp packages.conf_hr packages.conf
313    
314     cd ../build
315     \rm *
316     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
317     make depend
318     make -j
319    
320     cd ..
321     mkdir run
322     cd run
323     \rm *
324     \cp ../input/* .
325     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
326     ln -sf ../../../../run_template/* .
327     \rm pickup*
328 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
329     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
330 dimitri 1.57 \cp ../build/mitgcmuv .
331     job_c19_500cpu < /dev/null >&! output.run &
332 dimitri 1.56
333    
334 dimitri 1.60 ##########################################################################
335     ##########################################################################
336     # 510*510*6*50, 216-cpu cube sphere on cosmos
337    
338     cd MITgcm/verification/global_ocean.cs32x15/code
339     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
340     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
341     \cp SIZE.h_216 SIZE.h
342     \cp packages.conf_hr packages.conf
343    
344     module unload latest_intel80
345     module unload mpich-gm-intel80
346     module load latest_intel81
347     module load mpich-gm-intel81
348    
349     cd ../build
350     \rm *
351     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
352     make depend
353     make -j
354    
355     cd ..
356     mkdir run
357     cd run
358     \rm *
359     \cp ../input/* .
360     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
361     ln -sf ../../../../run_template/* .
362     \rm pickup*
363 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
364     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
365 dimitri 1.60 \cp ../build/mitgcmuv .
366     bsub < job_cosmos
367    
368 dimitri 1.41
369 dimitri 1.42 ##########################################################################
370     ##########################################################################
371     # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
372     # requires input files in sudirectories run_template and ncep_rgau
373     # presently residing under orion:/tmp1/dmenem/cube
374 dimitri 1.41
375 dimitri 1.42 cd MITgcm/verification/global_ocean.cs32x15/code
376     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
377     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
378     \cp SIZE.h_54 SIZE.h
379     \cp packages.conf_hr packages.conf
380 dimitri 1.41
381 dimitri 1.42 cd ../build
382     \rm *
383     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
384     make depend
385     make -j
386 dimitri 1.41
387 dimitri 1.42 cd ..
388     mkdir run
389     cd run
390     \rm *
391     \cp ../input/* .
392     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
393     qsub job_orion
394 dimitri 1.35
395    
396     ##########################################################################
397     ##########################################################################
398 dimitri 1.41 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
399 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
400     # presently residing under orion:/tmp1/dmenem/cube
401    
402     cd MITgcm/verification/global_ocean.cs32x15/code
403     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
404 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
405     \cp SIZE.h_41 SIZE.h
406 dimitri 1.35 \cp packages.conf_hr packages.conf
407    
408     cd ../build
409     \rm *
410 dimitri 1.41 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
411 dimitri 1.35 make depend
412 dimitri 1.41 make -j
413 dimitri 1.35
414     cd ..
415     mkdir run
416     cd run
417     \rm *
418     \cp ../input/* .
419     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
420 dimitri 1.41 qsub job_orion41
421 dimitri 1.9
422    
423     ##########################################################################
424     ##########################################################################
425 dimitri 1.41 # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
426 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
427 dimitri 1.41 # presently residing under orion:/tmp1/dmenem/cube
428 dimitri 1.9
429     cd MITgcm/verification/global_ocean.cs32x15/code
430     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
431 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
432     \cp SIZE.h_50 SIZE.h
433 dimitri 1.12 \cp packages.conf_hr packages.conf
434 dimitri 1.9
435 dimitri 1.25 cd ../build
436 dimitri 1.15 \rm *
437 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
438 dimitri 1.9 make depend
439 dimitri 1.41 make -j
440 dimitri 1.9
441     cd ..
442     mkdir run
443     cd run
444 dimitri 1.15 \rm *
445     \cp ../input/* .
446     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
447 dimitri 1.41 qsub job_orion
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