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Revision 1.75 - (hide annotations) (download)
Fri Nov 3 23:17:42 2006 UTC (17 years, 7 months ago) by dimitri
Branch: MAIN
Changes since 1.74: +1 -1 lines 
preparing for cube43
1 dimitri 1.59 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.65
3 dimitri 1.72 =================
4     UPDATES
5    
6 dimitri 1.75 November 3, 2006: 216-CPU code for cube43
7 dimitri 1.74 Martin's growth.F routine and Patrick's pkg/seaice diagnostics
8    
9 dimitri 1.72 October 15, 2006: 216-CPU code for cube40
10    
11 dimitri 1.66 September 28, 2006: 216-CPU code for cube38
12    
13     September 4, 2006
14 dimitri 1.65 Modified 32*32*6*15 experiments to use grid_cs32.* files from
15     verification/tutorial_held_suarez_cs/input instead of
16     tile* files from verification/global_ocean.cs32x15/input
17    
18 dimitri 1.72 August 8, 2006: 216-CPU code and input used for cube37
19 dimitri 1.64 using "June 10, 2006" MITgcm code.
20 dimitri 1.8
21 dimitri 1.67 for online T/S profile diagnostics all that is needed is
22     profiles_init_fixed
23     profiles_inloop
24     see pkg/ecco/ecco_cost_init_fixed.F
25     pkg/ecco/cost_averagesfields.F
26    
27 dimitri 1.8
28     ##########################################################################
29     ##########################################################################
30 dimitri 1.14 # getting the code from anonymous CVS server
31 dimitri 1.68 #
32    
33     bash or sh shell:
34     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
35     $ cvs login
36     ( enter the CVS password: "cvsanon" )
37    
38     tcsh or csh shell:
39     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
40     $ cvs login
41     ( enter the CVS password: "cvsanon" )
42 dimitri 1.1
43 dimitri 1.38 cvs co MITgcm_contrib/high_res_cube/README_ice
44     cvs co MITgcm_contrib/high_res_cube/code-mods
45     cvs co MITgcm_contrib/high_res_cube/input
46     cvs co MITgcm_contrib/high_res_cube/results
47 dimitri 1.43 cvs co MITgcm_code
48     cvs co MITgcm/verification/global_ocean.cs32x15
49 dimitri 1.65 cvs co MITgcm/verification/tutorial_held_suarez_cs/input
50 dimitri 1.14
51    
52     ##########################################################################
53     ##########################################################################
54 dimitri 1.73 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
55     # requires input files in sudirectories run_template and ncep_rgau
56     # these can be obained from lou:/u/menemenl/cube
57    
58     cd MITgcm/verification/global_ocean.cs32x15/code
59     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
60     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
61     \cp SIZE.h_216 SIZE.h
62     \cp packages.conf_hr packages.conf
63    
64     cd ../build
65     \rm *
66     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
67     make depend
68     make -j
69    
70     cd ..
71     mkdir run
72     cd run
73     \rm *
74     \cp ../input/* .
75     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
76     ln -sf ../../../../run_template/* .
77     \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
78     \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
79     ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
80     ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
81     \cp ../build/mitgcmuv .
82     qsub job_altix
83    
84    
85     ##########################################################################
86     ##########################################################################
87 dimitri 1.14 # 32*32*6*15, 1-cpu cube sphere
88 dimitri 1.3
89 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
90 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
91 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
92 dimitri 1.37 cd ../build
93     \rm *
94     ../../../tools/genmake2 -mods=../code
95     make depend
96     make
97     cd ..
98     mkdir run
99     cd run
100     \rm *
101 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
102 dimitri 1.37 \cp ../input/* .
103     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104     ../build/mitgcmuv >& output.txt
105 dimitri 1.3
106 dimitri 1.37 comparison output is in:
107     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
108    
109     to use matlab to look at the output
110     matlab
111    
112 dimitri 1.55 for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
113     'QNETtave','FVtave','FUtave','EmPmRtave'}
114 dimitri 1.37 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
115     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
116     end
117    
118 dimitri 1.55 heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
119 dimitri 1.37 mask=0*heff; mask(find(heff>.001))=1;
120 dimitri 1.55 uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
121     vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
122 dimitri 1.37 clf
123 dimitri 1.55 subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
124     subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
125     subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
126     subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
127 dimitri 1.37
128    
129     ##########################################################################
130     ##########################################################################
131     # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
132    
133     cd MITgcm/verification/global_ocean.cs32x15/code
134     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135     \cp ../code_alt/code.176t_8x4/* .
136 dimitri 1.25 cd ../build
137 dimitri 1.37 \rm *
138 dimitri 1.10 ../../../tools/genmake2 -mods=../code
139 dimitri 1.1 make depend
140     make
141     cd ..
142     mkdir run
143     cd run
144 dimitri 1.37 \rm *
145 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
146 dimitri 1.8 \cp ../input/* .
147     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
148 dimitri 1.3 ../build/mitgcmuv >& output.txt
149    
150 dimitri 1.8
151     ##########################################################################
152     ##########################################################################
153 dimitri 1.56 # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
154 dimitri 1.8
155     cd MITgcm/verification/global_ocean.cs32x15/code
156     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
157 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
158 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
159    
160 dimitri 1.25 cd ../build
161 dimitri 1.14 \rm *
162 dimitri 1.54 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
163 dimitri 1.8 make depend
164 dimitri 1.41 make -j
165 dimitri 1.8
166     cd ..
167     mkdir run
168     cd run
169 dimitri 1.14 \rm *
170 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
171 dimitri 1.8 \cp ../input/* .
172     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
173     mpirun -np 2 ../build/mitgcmuv
174    
175    
176     ##########################################################################
177     ##########################################################################
178 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
179 dimitri 1.36 # starting with pickup file from end of 1992
180 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
181    
182     cd MITgcm/verification/global_ocean.cs32x15/code
183     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
184     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
185     \cp packages.conf_hr packages.conf
186    
187     cd ../build
188     \rm *
189 dimitri 1.40 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
190 dimitri 1.35 make depend
191 dimitri 1.41 make -j
192 dimitri 1.35
193     cd ..
194     mkdir run
195     cd run
196     \rm *
197     \cp ../input/* .
198     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
199 dimitri 1.41 qsub job_altix92_54t
200 dimitri 1.35
201    
202     ##########################################################################
203     ##########################################################################
204 dimitri 1.58 # 510*510*6*50, 1500-tile, 150-cpu, excludes land
205     # uses s1500t_17x51 configuration
206    
207     cd MITgcm/verification/global_ocean.cs32x15/code
208     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
209     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
210     \cp SIZE.h_150 SIZE.h
211     \cp packages.conf_hr packages.conf
212    
213     cd ../build
214     \rm *
215     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
216     make depend
217     make -j
218    
219     cd ..
220     mkdir run
221     cd run
222     \rm *
223     \cp ../input/* .
224     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
225     ln -sf ../../../../run_template/* .
226     \rm pickup*
227 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
228     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
229 dimitri 1.58 \cp ../build/mitgcmuv mitgcmuv150
230     qsub job_altix150
231    
232    
233 dimitri 1.61 ##########################################################################
234     ##########################################################################
235     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
236     # uses s1500t_17x51 configuration
237     # example for running on c17-c20 using arrayd
238    
239     cd MITgcm/verification/global_ocean.cs32x15/code
240     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
241     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
242     \cp SIZE.h_375 SIZE.h
243     \cp packages.conf_hr packages.conf
244    
245     cd ../build
246     \rm *
247     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
248     make depend
249     make -j
250    
251     cd ..
252     mkdir run
253     cd run
254     \rm *
255     \cp ../input/* .
256     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
257     ln -sf ../../../../run_template/* .
258     \rm pickup*
259     ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
260     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
261     \cp ../build/mitgcmuv .
262     job_c20_375cpu < /dev/null >&! output.run &
263    
264 dimitri 1.58
265 dimitri 1.56 ##########################################################################
266     ##########################################################################
267     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
268     # uses s1500t_17x51 configuration
269     # example for running on c17-c20 using arrayd
270    
271     cd MITgcm/verification/global_ocean.cs32x15/code
272     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
273     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
274     \cp SIZE.h_375 SIZE.h
275     \cp packages.conf_hr packages.conf
276    
277     cd ../build
278     \rm *
279     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
280     make depend
281     make -j
282    
283     cd ..
284     mkdir run
285     cd run
286     \rm *
287     \cp ../input/* .
288     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
289     ln -sf ../../../../run_template/* .
290     \rm pickup*
291 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
292     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
293 dimitri 1.56 \cp ../build/mitgcmuv .
294 dimitri 1.57 job_c20_375cpu < /dev/null >&! output.run &
295    
296    
297     ##########################################################################
298     ##########################################################################
299     # 510*510*6*50, 1500-tile, 500-cpu, excludes land
300     # uses s1500t_17x51 configuration
301     # example for running on c17-c20 using arrayd
302    
303     cd MITgcm/verification/global_ocean.cs32x15/code
304     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
305     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
306     \cp SIZE.h_500 SIZE.h
307     \cp packages.conf_hr packages.conf
308    
309     cd ../build
310     \rm *
311     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
312     make depend
313     make -j
314    
315     cd ..
316     mkdir run
317     cd run
318     \rm *
319     \cp ../input/* .
320     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
321     ln -sf ../../../../run_template/* .
322     \rm pickup*
323 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
324     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
325 dimitri 1.57 \cp ../build/mitgcmuv .
326     job_c19_500cpu < /dev/null >&! output.run &
327 dimitri 1.56
328    
329 dimitri 1.60 ##########################################################################
330     ##########################################################################
331     # 510*510*6*50, 216-cpu cube sphere on cosmos
332    
333     cd MITgcm/verification/global_ocean.cs32x15/code
334     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
335     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
336     \cp SIZE.h_216 SIZE.h
337     \cp packages.conf_hr packages.conf
338    
339     module unload latest_intel80
340     module unload mpich-gm-intel80
341     module load latest_intel81
342     module load mpich-gm-intel81
343    
344     cd ../build
345     \rm *
346     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
347     make depend
348     make -j
349    
350     cd ..
351     mkdir run
352     cd run
353     \rm *
354     \cp ../input/* .
355     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
356     ln -sf ../../../../run_template/* .
357     \rm pickup*
358 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
359     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
360 dimitri 1.60 \cp ../build/mitgcmuv .
361     bsub < job_cosmos
362    
363 dimitri 1.41
364 dimitri 1.42 ##########################################################################
365     ##########################################################################
366     # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
367     # requires input files in sudirectories run_template and ncep_rgau
368     # presently residing under orion:/tmp1/dmenem/cube
369 dimitri 1.41
370 dimitri 1.42 cd MITgcm/verification/global_ocean.cs32x15/code
371     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
372     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
373     \cp SIZE.h_54 SIZE.h
374     \cp packages.conf_hr packages.conf
375 dimitri 1.41
376 dimitri 1.42 cd ../build
377     \rm *
378     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
379     make depend
380     make -j
381 dimitri 1.41
382 dimitri 1.42 cd ..
383     mkdir run
384     cd run
385     \rm *
386     \cp ../input/* .
387     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
388     qsub job_orion
389 dimitri 1.35
390    
391     ##########################################################################
392     ##########################################################################
393 dimitri 1.41 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
394 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
395     # presently residing under orion:/tmp1/dmenem/cube
396    
397     cd MITgcm/verification/global_ocean.cs32x15/code
398     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
399 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
400     \cp SIZE.h_41 SIZE.h
401 dimitri 1.35 \cp packages.conf_hr packages.conf
402    
403     cd ../build
404     \rm *
405 dimitri 1.41 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
406 dimitri 1.35 make depend
407 dimitri 1.41 make -j
408 dimitri 1.35
409     cd ..
410     mkdir run
411     cd run
412     \rm *
413     \cp ../input/* .
414     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
415 dimitri 1.41 qsub job_orion41
416 dimitri 1.9
417    
418     ##########################################################################
419     ##########################################################################
420 dimitri 1.41 # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
421 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
422 dimitri 1.41 # presently residing under orion:/tmp1/dmenem/cube
423 dimitri 1.9
424     cd MITgcm/verification/global_ocean.cs32x15/code
425     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
426 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
427     \cp SIZE.h_50 SIZE.h
428 dimitri 1.12 \cp packages.conf_hr packages.conf
429 dimitri 1.9
430 dimitri 1.25 cd ../build
431 dimitri 1.15 \rm *
432 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
433 dimitri 1.9 make depend
434 dimitri 1.41 make -j
435 dimitri 1.9
436     cd ..
437     mkdir run
438     cd run
439 dimitri 1.15 \rm *
440     \cp ../input/* .
441     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
442 dimitri 1.41 qsub job_orion
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