Annotation of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006
216-CPU code and input used for integrating cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F


##########################################################################
##########################################################################
# getting the code from anonymous CVS server
#

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
         'QNETtave','FVtave','FUtave','EmPmRtave'}
    tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
# requires input files in sudirectories run_template and ncep_rgau
# these can be obained from lou:/u/menemenl/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of
../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
\rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	dimitri	1.59	Instructions for setting up a cube-sphere integration with sea-ice.
2	dimitri	1.65
3	dimitri	1.66	September 28, 2006: 216-CPU code for cube38
4
5			September 4, 2006
6	dimitri	1.65	Modified 3232615 experiments to use grid_cs32. files from
7			verification/tutorial_held_suarez_cs/input instead of
8			tile* files from verification/global_ocean.cs32x15/input
9
10	dimitri	1.66	August 8, 2006
11	dimitri	1.64	216-CPU code and input used for integrating cube37
12			using "June 10, 2006" MITgcm code.
13	dimitri	1.8
14	dimitri	1.67	for online T/S profile diagnostics all that is needed is
15			profiles_init_fixed
16			profiles_inloop
17			see pkg/ecco/ecco_cost_init_fixed.F
18			pkg/ecco/cost_averagesfields.F
19
20	dimitri	1.8
21			##########################################################################
22			##########################################################################
23	dimitri	1.14	# getting the code from anonymous CVS server
24	dimitri	1.68	#
25
26			bash or sh shell:
27			$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
28			$ cvs login
29			( enter the CVS password: "cvsanon" )
30
31			tcsh or csh shell:
32			$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
33			$ cvs login
34			( enter the CVS password: "cvsanon" )
35	dimitri	1.1
36	dimitri	1.38	cvs co MITgcm_contrib/high_res_cube/README_ice
37			cvs co MITgcm_contrib/high_res_cube/code-mods
38			cvs co MITgcm_contrib/high_res_cube/input
39			cvs co MITgcm_contrib/high_res_cube/results
40	dimitri	1.43	cvs co MITgcm_code
41			cvs co MITgcm/verification/global_ocean.cs32x15
42	dimitri	1.65	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
43	dimitri	1.14
44
45			##########################################################################
46			##########################################################################
47			# 32326*15, 1-cpu cube sphere
48	dimitri	1.3
49	dimitri	1.1	cd MITgcm/verification/global_ocean.cs32x15/code
50	dimitri	1.8	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
51	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
52	dimitri	1.37	cd ../build
53			\rm *
54			../../../tools/genmake2 -mods=../code
55			make depend
56			make
57			cd ..
58			mkdir run
59			cd run
60			\rm *
61	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
62	dimitri	1.37	\cp ../input/* .
63			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
64			../build/mitgcmuv >& output.txt
65	dimitri	1.3
66	dimitri	1.37	comparison output is in:
67			../../../../MITgcm_contrib/high_res_cube/results/output.txt
68
69			to use matlab to look at the output
70			matlab
71
72	dimitri	1.55	for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
73			'QNETtave','FVtave','FUtave','EmPmRtave'}
74	dimitri	1.37	tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
75			cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
76			end
77
78	dimitri	1.55	heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
79	dimitri	1.37	mask=0*heff; mask(find(heff>.001))=1;
80	dimitri	1.55	uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
81			vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
82	dimitri	1.37	clf
83	dimitri	1.55	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
84			subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
85			subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
86			subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
87	dimitri	1.37
88
89			##########################################################################
90			##########################################################################
91	dimitri	1.67	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
92			# requires input files in sudirectories run_template and ncep_rgau
93			# these can be obained from lou:/u/menemenl/cube
94
95			cd MITgcm/verification/global_ocean.cs32x15/code
96			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
98			\cp SIZE.h_216 SIZE.h
99			\cp packages.conf_hr packages.conf
100
101			cd ../build
102			\rm *
103			../../../tools/genmake2 -mods=../code -of
104	dimitri	1.70	../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
105	dimitri	1.67	make depend
106			make -j
107
108			cd ..
109			mkdir run
110			cd run
111			\rm *
112			\cp ../input/* .
113			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
114			ln -sf ../../../../run_template/* .
115			\rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
116			\rm 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
117			ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
118	dimitri	1.69	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
119	dimitri	1.67	\cp ../build/mitgcmuv .
120			qsub job_altix
121
122
123			##########################################################################
124			##########################################################################
125	dimitri	1.37	# 32326*15, 17-tile, 1-cpu cube sphere experiment
126
127			cd MITgcm/verification/global_ocean.cs32x15/code
128			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
129			\cp ../code_alt/code.176t_8x4/* .
130	dimitri	1.25	cd ../build
131	dimitri	1.37	\rm *
132	dimitri	1.10	../../../tools/genmake2 -mods=../code
133	dimitri	1.1	make depend
134			make
135			cd ..
136			mkdir run
137			cd run
138	dimitri	1.37	\rm *
139	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
140	dimitri	1.8	\cp ../input/* .
141			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
142	dimitri	1.3	../build/mitgcmuv >& output.txt
143
144	dimitri	1.8
145			##########################################################################
146			##########################################################################
147	dimitri	1.56	# 32326*15, 2-cpu cube sphere on the altices with ifort
148	dimitri	1.8
149			cd MITgcm/verification/global_ocean.cs32x15/code
150			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
151	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
152	dimitri	1.8	\cp SIZE.h_mpi SIZE.h
153
154	dimitri	1.25	cd ../build
155	dimitri	1.14	\rm *
156	dimitri	1.54	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
157	dimitri	1.8	make depend
158	dimitri	1.41	make -j
159	dimitri	1.8
160			cd ..
161			mkdir run
162			cd run
163	dimitri	1.14	\rm *
164	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
165	dimitri	1.8	\cp ../input/* .
166			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
167			mpirun -np 2 ../build/mitgcmuv
168
169
170			##########################################################################
171			##########################################################################
172	dimitri	1.35	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
173	dimitri	1.36	# starting with pickup file from end of 1992
174	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
175
176			cd MITgcm/verification/global_ocean.cs32x15/code
177			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
178			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
179			\cp packages.conf_hr packages.conf
180
181			cd ../build
182			\rm *
183	dimitri	1.40	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
184	dimitri	1.35	make depend
185	dimitri	1.41	make -j
186	dimitri	1.35
187			cd ..
188			mkdir run
189			cd run
190			\rm *
191			\cp ../input/* .
192			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
193	dimitri	1.41	qsub job_altix92_54t
194	dimitri	1.35
195
196			##########################################################################
197			##########################################################################
198	dimitri	1.58	# 5105106*50, 1500-tile, 150-cpu, excludes land
199			# uses s1500t_17x51 configuration
200
201			cd MITgcm/verification/global_ocean.cs32x15/code
202			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
203			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
204			\cp SIZE.h_150 SIZE.h
205			\cp packages.conf_hr packages.conf
206
207			cd ../build
208			\rm *
209			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
210			make depend
211			make -j
212
213			cd ..
214			mkdir run
215			cd run
216			\rm *
217			\cp ../input/* .
218			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
219			ln -sf ../../../../run_template/* .
220			\rm pickup*
221	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
222			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
223	dimitri	1.58	\cp ../build/mitgcmuv mitgcmuv150
224			qsub job_altix150
225
226
227	dimitri	1.61	##########################################################################
228			##########################################################################
229			# 5105106*50, 1500-tile, 375-cpu, excludes land
230			# uses s1500t_17x51 configuration
231			# example for running on c17-c20 using arrayd
232
233			cd MITgcm/verification/global_ocean.cs32x15/code
234			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
235			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
236			\cp SIZE.h_375 SIZE.h
237			\cp packages.conf_hr packages.conf
238
239			cd ../build
240			\rm *
241			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
242			make depend
243			make -j
244
245			cd ..
246			mkdir run
247			cd run
248			\rm *
249			\cp ../input/* .
250			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
251			ln -sf ../../../../run_template/* .
252			\rm pickup*
253			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
254			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
255			\cp ../build/mitgcmuv .
256			job_c20_375cpu < /dev/null >&! output.run &
257
258	dimitri	1.58
259	dimitri	1.56	##########################################################################
260			##########################################################################
261			# 5105106*50, 1500-tile, 375-cpu, excludes land
262			# uses s1500t_17x51 configuration
263			# example for running on c17-c20 using arrayd
264
265			cd MITgcm/verification/global_ocean.cs32x15/code
266			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
267			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
268			\cp SIZE.h_375 SIZE.h
269			\cp packages.conf_hr packages.conf
270
271			cd ../build
272			\rm *
273			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
274			make depend
275			make -j
276
277			cd ..
278			mkdir run
279			cd run
280			\rm *
281			\cp ../input/* .
282			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
283			ln -sf ../../../../run_template/* .
284			\rm pickup*
285	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
286			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
287	dimitri	1.56	\cp ../build/mitgcmuv .
288	dimitri	1.57	job_c20_375cpu < /dev/null >&! output.run &
289
290
291			##########################################################################
292			##########################################################################
293			# 5105106*50, 1500-tile, 500-cpu, excludes land
294			# uses s1500t_17x51 configuration
295			# example for running on c17-c20 using arrayd
296
297			cd MITgcm/verification/global_ocean.cs32x15/code
298			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
299			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
300			\cp SIZE.h_500 SIZE.h
301			\cp packages.conf_hr packages.conf
302
303			cd ../build
304			\rm *
305			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
306			make depend
307			make -j
308
309			cd ..
310			mkdir run
311			cd run
312			\rm *
313			\cp ../input/* .
314			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
315			ln -sf ../../../../run_template/* .
316			\rm pickup*
317	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
318			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
319	dimitri	1.57	\cp ../build/mitgcmuv .
320			job_c19_500cpu < /dev/null >&! output.run &
321	dimitri	1.56
322
323	dimitri	1.60	##########################################################################
324			##########################################################################
325			# 5105106*50, 216-cpu cube sphere on cosmos
326
327			cd MITgcm/verification/global_ocean.cs32x15/code
328			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
329			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
330			\cp SIZE.h_216 SIZE.h
331			\cp packages.conf_hr packages.conf
332
333			module unload latest_intel80
334			module unload mpich-gm-intel80
335			module load latest_intel81
336			module load mpich-gm-intel81
337
338			cd ../build
339			\rm *
340			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
341			make depend
342			make -j
343
344			cd ..
345			mkdir run
346			cd run
347			\rm *
348			\cp ../input/* .
349			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
350			ln -sf ../../../../run_template/* .
351			\rm pickup*
352	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
353			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
354	dimitri	1.60	\cp ../build/mitgcmuv .
355			bsub < job_cosmos
356
357	dimitri	1.41
358	dimitri	1.42	##########################################################################
359			##########################################################################
360			# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
361			# requires input files in sudirectories run_template and ncep_rgau
362			# presently residing under orion:/tmp1/dmenem/cube
363	dimitri	1.41
364	dimitri	1.42	cd MITgcm/verification/global_ocean.cs32x15/code
365			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
366			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
367			\cp SIZE.h_54 SIZE.h
368			\cp packages.conf_hr packages.conf
369	dimitri	1.41
370	dimitri	1.42	cd ../build
371			\rm *
372			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
373			make depend
374			make -j
375	dimitri	1.41
376	dimitri	1.42	cd ..
377			mkdir run
378			cd run
379			\rm *
380			\cp ../input/* .
381			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
382			qsub job_orion
383	dimitri	1.35
384
385			##########################################################################
386			##########################################################################
387	dimitri	1.41	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
388	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
389			# presently residing under orion:/tmp1/dmenem/cube
390
391			cd MITgcm/verification/global_ocean.cs32x15/code
392			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
393	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
394			\cp SIZE.h_41 SIZE.h
395	dimitri	1.35	\cp packages.conf_hr packages.conf
396
397			cd ../build
398			\rm *
399	dimitri	1.41	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
400	dimitri	1.35	make depend
401	dimitri	1.41	make -j
402	dimitri	1.35
403			cd ..
404			mkdir run
405			cd run
406			\rm *
407			\cp ../input/* .
408			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
409	dimitri	1.41	qsub job_orion41
410	dimitri	1.9
411
412			##########################################################################
413			##########################################################################
414	dimitri	1.41	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
415	dimitri	1.17	# requires input files in sudirectories run_template and ncep_rgau
416	dimitri	1.41	# presently residing under orion:/tmp1/dmenem/cube
417	dimitri	1.9
418			cd MITgcm/verification/global_ocean.cs32x15/code
419			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
420	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
421			\cp SIZE.h_50 SIZE.h
422	dimitri	1.12	\cp packages.conf_hr packages.conf
423	dimitri	1.9
424	dimitri	1.25	cd ../build
425	dimitri	1.15	\rm *
426	dimitri	1.13	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
427	dimitri	1.9	make depend
428	dimitri	1.41	make -j
429	dimitri	1.9
430			cd ..
431			mkdir run
432			cd run
433	dimitri	1.15	\rm *
434			\cp ../input/* .
435			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
436	dimitri	1.41	qsub job_orion