Annotation of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006
216-CPU code and input used for integrating cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F


##########################################################################
##########################################################################
# getting the code from anonymous CVS server
#

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
         'QNETtave','FVtave','FUtave','EmPmRtave'}
    tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
# requires input files in sudirectories run_template and ncep_rgau
# these can be obained from lou:/u/menemenl/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of
../../../tools/build_options/linux_ia\
64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
\rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	dimitri	1.59	Instructions for setting up a cube-sphere integration with sea-ice.
2	dimitri	1.65
3	dimitri	1.66	September 28, 2006: 216-CPU code for cube38
4
5			September 4, 2006
6	dimitri	1.65	Modified 3232615 experiments to use grid_cs32. files from
7			verification/tutorial_held_suarez_cs/input instead of
8			tile* files from verification/global_ocean.cs32x15/input
9
10	dimitri	1.66	August 8, 2006
11	dimitri	1.64	216-CPU code and input used for integrating cube37
12			using "June 10, 2006" MITgcm code.
13	dimitri	1.8
14	dimitri	1.67	for online T/S profile diagnostics all that is needed is
15			profiles_init_fixed
16			profiles_inloop
17			see pkg/ecco/ecco_cost_init_fixed.F
18			pkg/ecco/cost_averagesfields.F
19
20	dimitri	1.8
21			##########################################################################
22			##########################################################################
23	dimitri	1.14	# getting the code from anonymous CVS server
24	dimitri	1.68	#
25
26			bash or sh shell:
27			$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
28			$ cvs login
29			( enter the CVS password: "cvsanon" )
30
31			tcsh or csh shell:
32			$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
33			$ cvs login
34			( enter the CVS password: "cvsanon" )
35	dimitri	1.1
36	dimitri	1.38	cvs co MITgcm_contrib/high_res_cube/README_ice
37			cvs co MITgcm_contrib/high_res_cube/code-mods
38			cvs co MITgcm_contrib/high_res_cube/input
39			cvs co MITgcm_contrib/high_res_cube/results
40	dimitri	1.43	cvs co MITgcm_code
41			cvs co MITgcm/verification/global_ocean.cs32x15
42	dimitri	1.65	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
43	dimitri	1.14
44
45			##########################################################################
46			##########################################################################
47			# 32326*15, 1-cpu cube sphere
48	dimitri	1.3
49	dimitri	1.1	cd MITgcm/verification/global_ocean.cs32x15/code
50	dimitri	1.8	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
51	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
52	dimitri	1.37	cd ../build
53			\rm *
54			../../../tools/genmake2 -mods=../code
55			make depend
56			make
57			cd ..
58			mkdir run
59			cd run
60			\rm *
61	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
62	dimitri	1.37	\cp ../input/* .
63			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
64			../build/mitgcmuv >& output.txt
65	dimitri	1.3
66	dimitri	1.37	comparison output is in:
67			../../../../MITgcm_contrib/high_res_cube/results/output.txt
68
69			to use matlab to look at the output
70			matlab
71
72	dimitri	1.55	for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
73			'QNETtave','FVtave','FUtave','EmPmRtave'}
74	dimitri	1.37	tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
75			cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
76			end
77
78	dimitri	1.55	heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
79	dimitri	1.37	mask=0*heff; mask(find(heff>.001))=1;
80	dimitri	1.55	uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
81			vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
82	dimitri	1.37	clf
83	dimitri	1.55	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
84			subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
85			subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
86			subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
87	dimitri	1.37
88
89			##########################################################################
90			##########################################################################
91	dimitri	1.67	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
92			# requires input files in sudirectories run_template and ncep_rgau
93			# these can be obained from lou:/u/menemenl/cube
94
95			cd MITgcm/verification/global_ocean.cs32x15/code
96			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
98			\cp SIZE.h_216 SIZE.h
99			\cp packages.conf_hr packages.conf
100
101			cd ../build
102			\rm *
103			../../../tools/genmake2 -mods=../code -of
104			../../../tools/build_options/linux_ia\
105			64_ifort+mpi_altix_nas
106			make depend
107			make -j
108
109			cd ..
110			mkdir run
111			cd run
112			\rm *
113			\cp ../input/* .
114			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
115			ln -sf ../../../../run_template/* .
116			\rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
117			\rm 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
118			ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
119	dimitri	1.69	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
120	dimitri	1.67	\cp ../build/mitgcmuv .
121			qsub job_altix
122
123
124			##########################################################################
125			##########################################################################
126	dimitri	1.37	# 32326*15, 17-tile, 1-cpu cube sphere experiment
127
128			cd MITgcm/verification/global_ocean.cs32x15/code
129			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
130			\cp ../code_alt/code.176t_8x4/* .
131	dimitri	1.25	cd ../build
132	dimitri	1.37	\rm *
133	dimitri	1.10	../../../tools/genmake2 -mods=../code
134	dimitri	1.1	make depend
135			make
136			cd ..
137			mkdir run
138			cd run
139	dimitri	1.37	\rm *
140	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
141	dimitri	1.8	\cp ../input/* .
142			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
143	dimitri	1.3	../build/mitgcmuv >& output.txt
144
145	dimitri	1.8
146			##########################################################################
147			##########################################################################
148	dimitri	1.56	# 32326*15, 2-cpu cube sphere on the altices with ifort
149	dimitri	1.8
150			cd MITgcm/verification/global_ocean.cs32x15/code
151			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
152	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
153	dimitri	1.8	\cp SIZE.h_mpi SIZE.h
154
155	dimitri	1.25	cd ../build
156	dimitri	1.14	\rm *
157	dimitri	1.54	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
158	dimitri	1.8	make depend
159	dimitri	1.41	make -j
160	dimitri	1.8
161			cd ..
162			mkdir run
163			cd run
164	dimitri	1.14	\rm *
165	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
166	dimitri	1.8	\cp ../input/* .
167			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
168			mpirun -np 2 ../build/mitgcmuv
169
170
171			##########################################################################
172			##########################################################################
173	dimitri	1.35	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
174	dimitri	1.36	# starting with pickup file from end of 1992
175	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
176
177			cd MITgcm/verification/global_ocean.cs32x15/code
178			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
179			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
180			\cp packages.conf_hr packages.conf
181
182			cd ../build
183			\rm *
184	dimitri	1.40	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
185	dimitri	1.35	make depend
186	dimitri	1.41	make -j
187	dimitri	1.35
188			cd ..
189			mkdir run
190			cd run
191			\rm *
192			\cp ../input/* .
193			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
194	dimitri	1.41	qsub job_altix92_54t
195	dimitri	1.35
196
197			##########################################################################
198			##########################################################################
199	dimitri	1.58	# 5105106*50, 1500-tile, 150-cpu, excludes land
200			# uses s1500t_17x51 configuration
201
202			cd MITgcm/verification/global_ocean.cs32x15/code
203			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
204			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
205			\cp SIZE.h_150 SIZE.h
206			\cp packages.conf_hr packages.conf
207
208			cd ../build
209			\rm *
210			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
211			make depend
212			make -j
213
214			cd ..
215			mkdir run
216			cd run
217			\rm *
218			\cp ../input/* .
219			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
220			ln -sf ../../../../run_template/* .
221			\rm pickup*
222	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
223			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
224	dimitri	1.58	\cp ../build/mitgcmuv mitgcmuv150
225			qsub job_altix150
226
227
228	dimitri	1.61	##########################################################################
229			##########################################################################
230			# 5105106*50, 1500-tile, 375-cpu, excludes land
231			# uses s1500t_17x51 configuration
232			# example for running on c17-c20 using arrayd
233
234			cd MITgcm/verification/global_ocean.cs32x15/code
235			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
236			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
237			\cp SIZE.h_375 SIZE.h
238			\cp packages.conf_hr packages.conf
239
240			cd ../build
241			\rm *
242			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
243			make depend
244			make -j
245
246			cd ..
247			mkdir run
248			cd run
249			\rm *
250			\cp ../input/* .
251			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
252			ln -sf ../../../../run_template/* .
253			\rm pickup*
254			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
255			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
256			\cp ../build/mitgcmuv .
257			job_c20_375cpu < /dev/null >&! output.run &
258
259	dimitri	1.58
260	dimitri	1.56	##########################################################################
261			##########################################################################
262			# 5105106*50, 1500-tile, 375-cpu, excludes land
263			# uses s1500t_17x51 configuration
264			# example for running on c17-c20 using arrayd
265
266			cd MITgcm/verification/global_ocean.cs32x15/code
267			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
268			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
269			\cp SIZE.h_375 SIZE.h
270			\cp packages.conf_hr packages.conf
271
272			cd ../build
273			\rm *
274			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
275			make depend
276			make -j
277
278			cd ..
279			mkdir run
280			cd run
281			\rm *
282			\cp ../input/* .
283			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
284			ln -sf ../../../../run_template/* .
285			\rm pickup*
286	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
287			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
288	dimitri	1.56	\cp ../build/mitgcmuv .
289	dimitri	1.57	job_c20_375cpu < /dev/null >&! output.run &
290
291
292			##########################################################################
293			##########################################################################
294			# 5105106*50, 1500-tile, 500-cpu, excludes land
295			# uses s1500t_17x51 configuration
296			# example for running on c17-c20 using arrayd
297
298			cd MITgcm/verification/global_ocean.cs32x15/code
299			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
300			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
301			\cp SIZE.h_500 SIZE.h
302			\cp packages.conf_hr packages.conf
303
304			cd ../build
305			\rm *
306			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
307			make depend
308			make -j
309
310			cd ..
311			mkdir run
312			cd run
313			\rm *
314			\cp ../input/* .
315			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
316			ln -sf ../../../../run_template/* .
317			\rm pickup*
318	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
319			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
320	dimitri	1.57	\cp ../build/mitgcmuv .
321			job_c19_500cpu < /dev/null >&! output.run &
322	dimitri	1.56
323
324	dimitri	1.60	##########################################################################
325			##########################################################################
326			# 5105106*50, 216-cpu cube sphere on cosmos
327
328			cd MITgcm/verification/global_ocean.cs32x15/code
329			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
330			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
331			\cp SIZE.h_216 SIZE.h
332			\cp packages.conf_hr packages.conf
333
334			module unload latest_intel80
335			module unload mpich-gm-intel80
336			module load latest_intel81
337			module load mpich-gm-intel81
338
339			cd ../build
340			\rm *
341			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
342			make depend
343			make -j
344
345			cd ..
346			mkdir run
347			cd run
348			\rm *
349			\cp ../input/* .
350			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
351			ln -sf ../../../../run_template/* .
352			\rm pickup*
353	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
354			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
355	dimitri	1.60	\cp ../build/mitgcmuv .
356			bsub < job_cosmos
357
358	dimitri	1.41
359	dimitri	1.42	##########################################################################
360			##########################################################################
361			# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
362			# requires input files in sudirectories run_template and ncep_rgau
363			# presently residing under orion:/tmp1/dmenem/cube
364	dimitri	1.41
365	dimitri	1.42	cd MITgcm/verification/global_ocean.cs32x15/code
366			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
367			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
368			\cp SIZE.h_54 SIZE.h
369			\cp packages.conf_hr packages.conf
370	dimitri	1.41
371	dimitri	1.42	cd ../build
372			\rm *
373			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
374			make depend
375			make -j
376	dimitri	1.41
377	dimitri	1.42	cd ..
378			mkdir run
379			cd run
380			\rm *
381			\cp ../input/* .
382			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
383			qsub job_orion
384	dimitri	1.35
385
386			##########################################################################
387			##########################################################################
388	dimitri	1.41	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
389	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
390			# presently residing under orion:/tmp1/dmenem/cube
391
392			cd MITgcm/verification/global_ocean.cs32x15/code
393			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
394	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
395			\cp SIZE.h_41 SIZE.h
396	dimitri	1.35	\cp packages.conf_hr packages.conf
397
398			cd ../build
399			\rm *
400	dimitri	1.41	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
401	dimitri	1.35	make depend
402	dimitri	1.41	make -j
403	dimitri	1.35
404			cd ..
405			mkdir run
406			cd run
407			\rm *
408			\cp ../input/* .
409			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
410	dimitri	1.41	qsub job_orion41
411	dimitri	1.9
412
413			##########################################################################
414			##########################################################################
415	dimitri	1.41	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
416	dimitri	1.17	# requires input files in sudirectories run_template and ncep_rgau
417	dimitri	1.41	# presently residing under orion:/tmp1/dmenem/cube
418	dimitri	1.9
419			cd MITgcm/verification/global_ocean.cs32x15/code
420			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
421	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
422			\cp SIZE.h_50 SIZE.h
423	dimitri	1.12	\cp packages.conf_hr packages.conf
424	dimitri	1.9
425	dimitri	1.25	cd ../build
426	dimitri	1.15	\rm *
427	dimitri	1.13	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
428	dimitri	1.9	make depend
429	dimitri	1.41	make -j
430	dimitri	1.9
431			cd ..
432			mkdir run
433			cd run
434	dimitri	1.15	\rm *
435			\cp ../input/* .
436			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
437	dimitri	1.41	qsub job_orion