Annotation of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006
216-CPU code and input used for integrating cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F


##########################################################################
##########################################################################
# getting the code from anonymous CVS server
#

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
         'QNETtave','FVtave','FUtave','EmPmRtave'}
    tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
# requires input files in sudirectories run_template and ncep_rgau
# these can be obained from lou:/u/menemenl/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of
../../../tools/build_options/linux_ia\
64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
\rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38
pickup_seaice.\
0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	dimitri	1.59	Instructions for setting up a cube-sphere integration with sea-ice.
2	dimitri	1.65
3	dimitri	1.66	September 28, 2006: 216-CPU code for cube38
4
5			September 4, 2006
6	dimitri	1.65	Modified 3232615 experiments to use grid_cs32. files from
7			verification/tutorial_held_suarez_cs/input instead of
8			tile* files from verification/global_ocean.cs32x15/input
9
10	dimitri	1.66	August 8, 2006
11	dimitri	1.64	216-CPU code and input used for integrating cube37
12			using "June 10, 2006" MITgcm code.
13	dimitri	1.8
14	dimitri	1.67	for online T/S profile diagnostics all that is needed is
15			profiles_init_fixed
16			profiles_inloop
17			see pkg/ecco/ecco_cost_init_fixed.F
18			pkg/ecco/cost_averagesfields.F
19
20	dimitri	1.8
21			##########################################################################
22			##########################################################################
23	dimitri	1.14	# getting the code from anonymous CVS server
24	dimitri	1.68	#
25
26			bash or sh shell:
27			$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
28			$ cvs login
29			( enter the CVS password: "cvsanon" )
30
31			tcsh or csh shell:
32			$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
33			$ cvs login
34			( enter the CVS password: "cvsanon" )
35	dimitri	1.1
36	dimitri	1.38	cvs co MITgcm_contrib/high_res_cube/README_ice
37			cvs co MITgcm_contrib/high_res_cube/code-mods
38			cvs co MITgcm_contrib/high_res_cube/input
39			cvs co MITgcm_contrib/high_res_cube/results
40	dimitri	1.43	cvs co MITgcm_code
41			cvs co MITgcm/verification/global_ocean.cs32x15
42	dimitri	1.65	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
43	dimitri	1.14
44
45			##########################################################################
46			##########################################################################
47			# 32326*15, 1-cpu cube sphere
48	dimitri	1.3
49	dimitri	1.1	cd MITgcm/verification/global_ocean.cs32x15/code
50	dimitri	1.8	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
51	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
52	dimitri	1.37	cd ../build
53			\rm *
54			../../../tools/genmake2 -mods=../code
55			make depend
56			make
57			cd ..
58			mkdir run
59			cd run
60			\rm *
61	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
62	dimitri	1.37	\cp ../input/* .
63			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
64			../build/mitgcmuv >& output.txt
65	dimitri	1.3
66	dimitri	1.37	comparison output is in:
67			../../../../MITgcm_contrib/high_res_cube/results/output.txt
68
69			to use matlab to look at the output
70			matlab
71
72	dimitri	1.55	for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
73			'QNETtave','FVtave','FUtave','EmPmRtave'}
74	dimitri	1.37	tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
75			cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
76			end
77
78	dimitri	1.55	heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
79	dimitri	1.37	mask=0*heff; mask(find(heff>.001))=1;
80	dimitri	1.55	uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
81			vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
82	dimitri	1.37	clf
83	dimitri	1.55	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
84			subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
85			subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
86			subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
87	dimitri	1.37
88
89			##########################################################################
90			##########################################################################
91	dimitri	1.67	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
92			# requires input files in sudirectories run_template and ncep_rgau
93			# these can be obained from lou:/u/menemenl/cube
94
95			cd MITgcm/verification/global_ocean.cs32x15/code
96			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
98			\cp SIZE.h_216 SIZE.h
99			\cp packages.conf_hr packages.conf
100
101			cd ../build
102			\rm *
103			../../../tools/genmake2 -mods=../code -of
104			../../../tools/build_options/linux_ia\
105			64_ifort+mpi_altix_nas
106			make depend
107			make -j
108
109			cd ..
110			mkdir run
111			cd run
112			\rm *
113			\cp ../input/* .
114			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
115			ln -sf ../../../../run_template/* .
116			\rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
117			\rm 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
118			ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
119			ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38
120			pickup_seaice.\
121			0000000216
122			\cp ../build/mitgcmuv .
123			qsub job_altix
124
125
126			##########################################################################
127			##########################################################################
128	dimitri	1.37	# 32326*15, 17-tile, 1-cpu cube sphere experiment
129
130			cd MITgcm/verification/global_ocean.cs32x15/code
131			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
132			\cp ../code_alt/code.176t_8x4/* .
133	dimitri	1.25	cd ../build
134	dimitri	1.37	\rm *
135	dimitri	1.10	../../../tools/genmake2 -mods=../code
136	dimitri	1.1	make depend
137			make
138			cd ..
139			mkdir run
140			cd run
141	dimitri	1.37	\rm *
142	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
143	dimitri	1.8	\cp ../input/* .
144			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
145	dimitri	1.3	../build/mitgcmuv >& output.txt
146
147	dimitri	1.8
148			##########################################################################
149			##########################################################################
150	dimitri	1.56	# 32326*15, 2-cpu cube sphere on the altices with ifort
151	dimitri	1.8
152			cd MITgcm/verification/global_ocean.cs32x15/code
153			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
154	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
155	dimitri	1.8	\cp SIZE.h_mpi SIZE.h
156
157	dimitri	1.25	cd ../build
158	dimitri	1.14	\rm *
159	dimitri	1.54	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
160	dimitri	1.8	make depend
161	dimitri	1.41	make -j
162	dimitri	1.8
163			cd ..
164			mkdir run
165			cd run
166	dimitri	1.14	\rm *
167	dimitri	1.65	\cp ../../tutorial_held_suarez_cs/input/grid* .
168	dimitri	1.8	\cp ../input/* .
169			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
170			mpirun -np 2 ../build/mitgcmuv
171
172
173			##########################################################################
174			##########################################################################
175	dimitri	1.35	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
176	dimitri	1.36	# starting with pickup file from end of 1992
177	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
178
179			cd MITgcm/verification/global_ocean.cs32x15/code
180			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
181			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
182			\cp packages.conf_hr packages.conf
183
184			cd ../build
185			\rm *
186	dimitri	1.40	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
187	dimitri	1.35	make depend
188	dimitri	1.41	make -j
189	dimitri	1.35
190			cd ..
191			mkdir run
192			cd run
193			\rm *
194			\cp ../input/* .
195			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
196	dimitri	1.41	qsub job_altix92_54t
197	dimitri	1.35
198
199			##########################################################################
200			##########################################################################
201	dimitri	1.58	# 5105106*50, 1500-tile, 150-cpu, excludes land
202			# uses s1500t_17x51 configuration
203
204			cd MITgcm/verification/global_ocean.cs32x15/code
205			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
206			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
207			\cp SIZE.h_150 SIZE.h
208			\cp packages.conf_hr packages.conf
209
210			cd ../build
211			\rm *
212			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
213			make depend
214			make -j
215
216			cd ..
217			mkdir run
218			cd run
219			\rm *
220			\cp ../input/* .
221			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
222			ln -sf ../../../../run_template/* .
223			\rm pickup*
224	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
225			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
226	dimitri	1.58	\cp ../build/mitgcmuv mitgcmuv150
227			qsub job_altix150
228
229
230	dimitri	1.61	##########################################################################
231			##########################################################################
232			# 5105106*50, 1500-tile, 375-cpu, excludes land
233			# uses s1500t_17x51 configuration
234			# example for running on c17-c20 using arrayd
235
236			cd MITgcm/verification/global_ocean.cs32x15/code
237			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
238			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
239			\cp SIZE.h_375 SIZE.h
240			\cp packages.conf_hr packages.conf
241
242			cd ../build
243			\rm *
244			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
245			make depend
246			make -j
247
248			cd ..
249			mkdir run
250			cd run
251			\rm *
252			\cp ../input/* .
253			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
254			ln -sf ../../../../run_template/* .
255			\rm pickup*
256			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
257			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
258			\cp ../build/mitgcmuv .
259			job_c20_375cpu < /dev/null >&! output.run &
260
261	dimitri	1.58
262	dimitri	1.56	##########################################################################
263			##########################################################################
264			# 5105106*50, 1500-tile, 375-cpu, excludes land
265			# uses s1500t_17x51 configuration
266			# example for running on c17-c20 using arrayd
267
268			cd MITgcm/verification/global_ocean.cs32x15/code
269			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
270			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
271			\cp SIZE.h_375 SIZE.h
272			\cp packages.conf_hr packages.conf
273
274			cd ../build
275			\rm *
276			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
277			make depend
278			make -j
279
280			cd ..
281			mkdir run
282			cd run
283			\rm *
284			\cp ../input/* .
285			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
286			ln -sf ../../../../run_template/* .
287			\rm pickup*
288	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
289			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
290	dimitri	1.56	\cp ../build/mitgcmuv .
291	dimitri	1.57	job_c20_375cpu < /dev/null >&! output.run &
292
293
294			##########################################################################
295			##########################################################################
296			# 5105106*50, 1500-tile, 500-cpu, excludes land
297			# uses s1500t_17x51 configuration
298			# example for running on c17-c20 using arrayd
299
300			cd MITgcm/verification/global_ocean.cs32x15/code
301			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
302			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
303			\cp SIZE.h_500 SIZE.h
304			\cp packages.conf_hr packages.conf
305
306			cd ../build
307			\rm *
308			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
309			make depend
310			make -j
311
312			cd ..
313			mkdir run
314			cd run
315			\rm *
316			\cp ../input/* .
317			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
318			ln -sf ../../../../run_template/* .
319			\rm pickup*
320	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
321			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
322	dimitri	1.57	\cp ../build/mitgcmuv .
323			job_c19_500cpu < /dev/null >&! output.run &
324	dimitri	1.56
325
326	dimitri	1.60	##########################################################################
327			##########################################################################
328			# 5105106*50, 216-cpu cube sphere on cosmos
329
330			cd MITgcm/verification/global_ocean.cs32x15/code
331			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
332			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
333			\cp SIZE.h_216 SIZE.h
334			\cp packages.conf_hr packages.conf
335
336			module unload latest_intel80
337			module unload mpich-gm-intel80
338			module load latest_intel81
339			module load mpich-gm-intel81
340
341			cd ../build
342			\rm *
343			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
344			make depend
345			make -j
346
347			cd ..
348			mkdir run
349			cd run
350			\rm *
351			\cp ../input/* .
352			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
353			ln -sf ../../../../run_template/* .
354			\rm pickup*
355	dimitri	1.61	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
356			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
357	dimitri	1.60	\cp ../build/mitgcmuv .
358			bsub < job_cosmos
359
360	dimitri	1.41
361	dimitri	1.42	##########################################################################
362			##########################################################################
363			# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
364			# requires input files in sudirectories run_template and ncep_rgau
365			# presently residing under orion:/tmp1/dmenem/cube
366	dimitri	1.41
367	dimitri	1.42	cd MITgcm/verification/global_ocean.cs32x15/code
368			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
369			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
370			\cp SIZE.h_54 SIZE.h
371			\cp packages.conf_hr packages.conf
372	dimitri	1.41
373	dimitri	1.42	cd ../build
374			\rm *
375			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
376			make depend
377			make -j
378	dimitri	1.41
379	dimitri	1.42	cd ..
380			mkdir run
381			cd run
382			\rm *
383			\cp ../input/* .
384			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
385			qsub job_orion
386	dimitri	1.35
387
388			##########################################################################
389			##########################################################################
390	dimitri	1.41	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
391	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
392			# presently residing under orion:/tmp1/dmenem/cube
393
394			cd MITgcm/verification/global_ocean.cs32x15/code
395			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
396	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
397			\cp SIZE.h_41 SIZE.h
398	dimitri	1.35	\cp packages.conf_hr packages.conf
399
400			cd ../build
401			\rm *
402	dimitri	1.41	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
403	dimitri	1.35	make depend
404	dimitri	1.41	make -j
405	dimitri	1.35
406			cd ..
407			mkdir run
408			cd run
409			\rm *
410			\cp ../input/* .
411			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
412	dimitri	1.41	qsub job_orion41
413	dimitri	1.9
414
415			##########################################################################
416			##########################################################################
417	dimitri	1.41	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
418	dimitri	1.17	# requires input files in sudirectories run_template and ncep_rgau
419	dimitri	1.41	# presently residing under orion:/tmp1/dmenem/cube
420	dimitri	1.9
421			cd MITgcm/verification/global_ocean.cs32x15/code
422			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
423	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
424			\cp SIZE.h_50 SIZE.h
425	dimitri	1.12	\cp packages.conf_hr packages.conf
426	dimitri	1.9
427	dimitri	1.25	cd ../build
428	dimitri	1.15	\rm *
429	dimitri	1.13	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
430	dimitri	1.9	make depend
431	dimitri	1.41	make -j
432	dimitri	1.9
433			cd ..
434			mkdir run
435			cd run
436	dimitri	1.15	\rm *
437			\cp ../input/* .
438			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
439	dimitri	1.41	qsub job_orion