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Revision 1.67 - (hide annotations) (download)
Wed Oct 4 17:47:26 2006 UTC (18 years, 9 months ago) by dimitri
Branch: MAIN
Changes since 1.66: +43 -66 lines
modified modpickup and updated README_ice

1 dimitri 1.59 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.65
3 dimitri 1.66 September 28, 2006: 216-CPU code for cube38
4    
5     September 4, 2006
6 dimitri 1.65 Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10 dimitri 1.66 August 8, 2006
11 dimitri 1.64 216-CPU code and input used for integrating cube37
12     using "June 10, 2006" MITgcm code.
13 dimitri 1.8
14 dimitri 1.67 for online T/S profile diagnostics all that is needed is
15     profiles_init_fixed
16     profiles_inloop
17     see pkg/ecco/ecco_cost_init_fixed.F
18     pkg/ecco/cost_averagesfields.F
19    
20 dimitri 1.8
21     ##########################################################################
22     ##########################################################################
23 dimitri 1.14 # getting the code from anonymous CVS server
24 dimitri 1.1
25 dimitri 1.38 cvs co MITgcm_contrib/high_res_cube/README_ice
26     cvs co MITgcm_contrib/high_res_cube/code-mods
27     cvs co MITgcm_contrib/high_res_cube/input
28     cvs co MITgcm_contrib/high_res_cube/results
29 dimitri 1.43 cvs co MITgcm_code
30     cvs co MITgcm/verification/global_ocean.cs32x15
31 dimitri 1.65 cvs co MITgcm/verification/tutorial_held_suarez_cs/input
32 dimitri 1.14
33    
34     ##########################################################################
35     ##########################################################################
36     # 32*32*6*15, 1-cpu cube sphere
37 dimitri 1.3
38 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
39 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
40 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
41 dimitri 1.37 cd ../build
42     \rm *
43     ../../../tools/genmake2 -mods=../code
44     make depend
45     make
46     cd ..
47     mkdir run
48     cd run
49     \rm *
50 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
51 dimitri 1.37 \cp ../input/* .
52     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
53     ../build/mitgcmuv >& output.txt
54 dimitri 1.3
55 dimitri 1.37 comparison output is in:
56     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
57    
58     to use matlab to look at the output
59     matlab
60    
61 dimitri 1.55 for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
62     'QNETtave','FVtave','FUtave','EmPmRtave'}
63 dimitri 1.37 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
64     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
65     end
66    
67 dimitri 1.55 heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
68 dimitri 1.37 mask=0*heff; mask(find(heff>.001))=1;
69 dimitri 1.55 uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
70     vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
71 dimitri 1.37 clf
72 dimitri 1.55 subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
73     subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
74     subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
75     subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
76 dimitri 1.37
77    
78     ##########################################################################
79     ##########################################################################
80 dimitri 1.67 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
81     # requires input files in sudirectories run_template and ncep_rgau
82     # these can be obained from lou:/u/menemenl/cube
83    
84     cd MITgcm/verification/global_ocean.cs32x15/code
85     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
86     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
87     \cp SIZE.h_216 SIZE.h
88     \cp packages.conf_hr packages.conf
89    
90     cd ../build
91     \rm *
92     ../../../tools/genmake2 -mods=../code -of
93     ../../../tools/build_options/linux_ia\
94     64_ifort+mpi_altix_nas
95     make depend
96     make -j
97    
98     cd ..
99     mkdir run
100     cd run
101     \rm *
102     \cp ../input/* .
103     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104     ln -sf ../../../../run_template/* .
105     \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
106     \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
107     ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
108     ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38
109     pickup_seaice.\
110     0000000216
111     \cp ../build/mitgcmuv .
112     qsub job_altix
113    
114    
115     ##########################################################################
116     ##########################################################################
117 dimitri 1.37 # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
118    
119     cd MITgcm/verification/global_ocean.cs32x15/code
120     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
121     \cp ../code_alt/code.176t_8x4/* .
122 dimitri 1.25 cd ../build
123 dimitri 1.37 \rm *
124 dimitri 1.10 ../../../tools/genmake2 -mods=../code
125 dimitri 1.1 make depend
126     make
127     cd ..
128     mkdir run
129     cd run
130 dimitri 1.37 \rm *
131 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
132 dimitri 1.8 \cp ../input/* .
133     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
134 dimitri 1.3 ../build/mitgcmuv >& output.txt
135    
136 dimitri 1.8
137     ##########################################################################
138     ##########################################################################
139 dimitri 1.56 # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
140 dimitri 1.8
141     cd MITgcm/verification/global_ocean.cs32x15/code
142     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
143 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
144 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
145    
146 dimitri 1.25 cd ../build
147 dimitri 1.14 \rm *
148 dimitri 1.54 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
149 dimitri 1.8 make depend
150 dimitri 1.41 make -j
151 dimitri 1.8
152     cd ..
153     mkdir run
154     cd run
155 dimitri 1.14 \rm *
156 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
157 dimitri 1.8 \cp ../input/* .
158     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
159     mpirun -np 2 ../build/mitgcmuv
160    
161    
162     ##########################################################################
163     ##########################################################################
164 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
165 dimitri 1.36 # starting with pickup file from end of 1992
166 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
167    
168     cd MITgcm/verification/global_ocean.cs32x15/code
169     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
170     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
171     \cp packages.conf_hr packages.conf
172    
173     cd ../build
174     \rm *
175 dimitri 1.40 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
176 dimitri 1.35 make depend
177 dimitri 1.41 make -j
178 dimitri 1.35
179     cd ..
180     mkdir run
181     cd run
182     \rm *
183     \cp ../input/* .
184     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
185 dimitri 1.41 qsub job_altix92_54t
186 dimitri 1.35
187    
188     ##########################################################################
189     ##########################################################################
190 dimitri 1.58 # 510*510*6*50, 1500-tile, 150-cpu, excludes land
191     # uses s1500t_17x51 configuration
192    
193     cd MITgcm/verification/global_ocean.cs32x15/code
194     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
195     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
196     \cp SIZE.h_150 SIZE.h
197     \cp packages.conf_hr packages.conf
198    
199     cd ../build
200     \rm *
201     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
202     make depend
203     make -j
204    
205     cd ..
206     mkdir run
207     cd run
208     \rm *
209     \cp ../input/* .
210     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
211     ln -sf ../../../../run_template/* .
212     \rm pickup*
213 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
214     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
215 dimitri 1.58 \cp ../build/mitgcmuv mitgcmuv150
216     qsub job_altix150
217    
218    
219 dimitri 1.61 ##########################################################################
220     ##########################################################################
221     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
222     # uses s1500t_17x51 configuration
223     # example for running on c17-c20 using arrayd
224    
225     cd MITgcm/verification/global_ocean.cs32x15/code
226     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
227     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
228     \cp SIZE.h_375 SIZE.h
229     \cp packages.conf_hr packages.conf
230    
231     cd ../build
232     \rm *
233     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
234     make depend
235     make -j
236    
237     cd ..
238     mkdir run
239     cd run
240     \rm *
241     \cp ../input/* .
242     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
243     ln -sf ../../../../run_template/* .
244     \rm pickup*
245     ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
246     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
247     \cp ../build/mitgcmuv .
248     job_c20_375cpu < /dev/null >&! output.run &
249    
250 dimitri 1.58
251 dimitri 1.56 ##########################################################################
252     ##########################################################################
253     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
254     # uses s1500t_17x51 configuration
255     # example for running on c17-c20 using arrayd
256    
257     cd MITgcm/verification/global_ocean.cs32x15/code
258     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
259     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
260     \cp SIZE.h_375 SIZE.h
261     \cp packages.conf_hr packages.conf
262    
263     cd ../build
264     \rm *
265     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
266     make depend
267     make -j
268    
269     cd ..
270     mkdir run
271     cd run
272     \rm *
273     \cp ../input/* .
274     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
275     ln -sf ../../../../run_template/* .
276     \rm pickup*
277 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
278     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
279 dimitri 1.56 \cp ../build/mitgcmuv .
280 dimitri 1.57 job_c20_375cpu < /dev/null >&! output.run &
281    
282    
283     ##########################################################################
284     ##########################################################################
285     # 510*510*6*50, 1500-tile, 500-cpu, excludes land
286     # uses s1500t_17x51 configuration
287     # example for running on c17-c20 using arrayd
288    
289     cd MITgcm/verification/global_ocean.cs32x15/code
290     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
291     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
292     \cp SIZE.h_500 SIZE.h
293     \cp packages.conf_hr packages.conf
294    
295     cd ../build
296     \rm *
297     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
298     make depend
299     make -j
300    
301     cd ..
302     mkdir run
303     cd run
304     \rm *
305     \cp ../input/* .
306     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
307     ln -sf ../../../../run_template/* .
308     \rm pickup*
309 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
310     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
311 dimitri 1.57 \cp ../build/mitgcmuv .
312     job_c19_500cpu < /dev/null >&! output.run &
313 dimitri 1.56
314    
315 dimitri 1.60 ##########################################################################
316     ##########################################################################
317     # 510*510*6*50, 216-cpu cube sphere on cosmos
318    
319     cd MITgcm/verification/global_ocean.cs32x15/code
320     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
321     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
322     \cp SIZE.h_216 SIZE.h
323     \cp packages.conf_hr packages.conf
324    
325     module unload latest_intel80
326     module unload mpich-gm-intel80
327     module load latest_intel81
328     module load mpich-gm-intel81
329    
330     cd ../build
331     \rm *
332     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
333     make depend
334     make -j
335    
336     cd ..
337     mkdir run
338     cd run
339     \rm *
340     \cp ../input/* .
341     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
342     ln -sf ../../../../run_template/* .
343     \rm pickup*
344 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
345     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
346 dimitri 1.60 \cp ../build/mitgcmuv .
347     bsub < job_cosmos
348    
349 dimitri 1.41
350 dimitri 1.42 ##########################################################################
351     ##########################################################################
352     # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
353     # requires input files in sudirectories run_template and ncep_rgau
354     # presently residing under orion:/tmp1/dmenem/cube
355 dimitri 1.41
356 dimitri 1.42 cd MITgcm/verification/global_ocean.cs32x15/code
357     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
358     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
359     \cp SIZE.h_54 SIZE.h
360     \cp packages.conf_hr packages.conf
361 dimitri 1.41
362 dimitri 1.42 cd ../build
363     \rm *
364     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
365     make depend
366     make -j
367 dimitri 1.41
368 dimitri 1.42 cd ..
369     mkdir run
370     cd run
371     \rm *
372     \cp ../input/* .
373     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
374     qsub job_orion
375 dimitri 1.35
376    
377     ##########################################################################
378     ##########################################################################
379 dimitri 1.41 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
380 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
381     # presently residing under orion:/tmp1/dmenem/cube
382    
383     cd MITgcm/verification/global_ocean.cs32x15/code
384     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
385 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
386     \cp SIZE.h_41 SIZE.h
387 dimitri 1.35 \cp packages.conf_hr packages.conf
388    
389     cd ../build
390     \rm *
391 dimitri 1.41 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
392 dimitri 1.35 make depend
393 dimitri 1.41 make -j
394 dimitri 1.35
395     cd ..
396     mkdir run
397     cd run
398     \rm *
399     \cp ../input/* .
400     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
401 dimitri 1.41 qsub job_orion41
402 dimitri 1.9
403    
404     ##########################################################################
405     ##########################################################################
406 dimitri 1.41 # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
407 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
408 dimitri 1.41 # presently residing under orion:/tmp1/dmenem/cube
409 dimitri 1.9
410     cd MITgcm/verification/global_ocean.cs32x15/code
411     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
412 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
413     \cp SIZE.h_50 SIZE.h
414 dimitri 1.12 \cp packages.conf_hr packages.conf
415 dimitri 1.9
416 dimitri 1.25 cd ../build
417 dimitri 1.15 \rm *
418 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
419 dimitri 1.9 make depend
420 dimitri 1.41 make -j
421 dimitri 1.9
422     cd ..
423     mkdir run
424     cd run
425 dimitri 1.15 \rm *
426     \cp ../input/* .
427     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
428 dimitri 1.41 qsub job_orion

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