1 |
dimitri |
1.59 |
Instructions for setting up a cube-sphere integration with sea-ice. |
2 |
dimitri |
1.65 |
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3 |
dimitri |
1.66 |
September 28, 2006: 216-CPU code for cube38 |
4 |
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5 |
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September 4, 2006 |
6 |
dimitri |
1.65 |
Modified 32*32*6*15 experiments to use grid_cs32.* files from |
7 |
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verification/tutorial_held_suarez_cs/input instead of |
8 |
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tile* files from verification/global_ocean.cs32x15/input |
9 |
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10 |
dimitri |
1.66 |
August 8, 2006 |
11 |
dimitri |
1.64 |
216-CPU code and input used for integrating cube37 |
12 |
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using "June 10, 2006" MITgcm code. |
13 |
dimitri |
1.8 |
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14 |
dimitri |
1.67 |
for online T/S profile diagnostics all that is needed is |
15 |
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profiles_init_fixed |
16 |
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profiles_inloop |
17 |
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see pkg/ecco/ecco_cost_init_fixed.F |
18 |
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pkg/ecco/cost_averagesfields.F |
19 |
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20 |
dimitri |
1.8 |
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21 |
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########################################################################## |
22 |
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########################################################################## |
23 |
dimitri |
1.14 |
# getting the code from anonymous CVS server |
24 |
dimitri |
1.1 |
|
25 |
dimitri |
1.38 |
cvs co MITgcm_contrib/high_res_cube/README_ice |
26 |
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cvs co MITgcm_contrib/high_res_cube/code-mods |
27 |
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cvs co MITgcm_contrib/high_res_cube/input |
28 |
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cvs co MITgcm_contrib/high_res_cube/results |
29 |
dimitri |
1.43 |
cvs co MITgcm_code |
30 |
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cvs co MITgcm/verification/global_ocean.cs32x15 |
31 |
dimitri |
1.65 |
cvs co MITgcm/verification/tutorial_held_suarez_cs/input |
32 |
dimitri |
1.14 |
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33 |
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34 |
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########################################################################## |
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########################################################################## |
36 |
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# 32*32*6*15, 1-cpu cube sphere |
37 |
dimitri |
1.3 |
|
38 |
dimitri |
1.1 |
cd MITgcm/verification/global_ocean.cs32x15/code |
39 |
dimitri |
1.8 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
40 |
dimitri |
1.33 |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
41 |
dimitri |
1.37 |
cd ../build |
42 |
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\rm * |
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../../../tools/genmake2 -mods=../code |
44 |
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make depend |
45 |
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make |
46 |
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cd .. |
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mkdir run |
48 |
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cd run |
49 |
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\rm * |
50 |
dimitri |
1.65 |
\cp ../../tutorial_held_suarez_cs/input/grid* . |
51 |
dimitri |
1.37 |
\cp ../input/* . |
52 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
53 |
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../build/mitgcmuv >& output.txt |
54 |
dimitri |
1.3 |
|
55 |
dimitri |
1.37 |
comparison output is in: |
56 |
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../../../../MITgcm_contrib/high_res_cube/results/output.txt |
57 |
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58 |
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to use matlab to look at the output |
59 |
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matlab |
60 |
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61 |
dimitri |
1.55 |
for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ... |
62 |
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'QNETtave','FVtave','FUtave','EmPmRtave'} |
63 |
dimitri |
1.37 |
tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]); |
64 |
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cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
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end |
66 |
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67 |
dimitri |
1.55 |
heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]); |
68 |
dimitri |
1.37 |
mask=0*heff; mask(find(heff>.001))=1; |
69 |
dimitri |
1.55 |
uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
71 |
dimitri |
1.37 |
clf |
72 |
dimitri |
1.55 |
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3') |
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subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6') |
74 |
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subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3') |
75 |
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subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6') |
76 |
dimitri |
1.37 |
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77 |
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78 |
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########################################################################## |
79 |
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########################################################################## |
80 |
dimitri |
1.67 |
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics |
81 |
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# requires input files in sudirectories run_template and ncep_rgau |
82 |
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# these can be obained from lou:/u/menemenl/cube |
83 |
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84 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
85 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
86 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
87 |
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\cp SIZE.h_216 SIZE.h |
88 |
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\cp packages.conf_hr packages.conf |
89 |
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90 |
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cd ../build |
91 |
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\rm * |
92 |
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../../../tools/genmake2 -mods=../code -of |
93 |
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../../../tools/build_options/linux_ia\ |
94 |
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64_ifort+mpi_altix_nas |
95 |
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make depend |
96 |
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make -j |
97 |
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98 |
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cd .. |
99 |
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mkdir run |
100 |
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cd run |
101 |
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\rm * |
102 |
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\cp ../input/* . |
103 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
104 |
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ln -sf ../../../../run_template/* . |
105 |
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\rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin |
106 |
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\rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t |
107 |
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ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216 |
108 |
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ln -sf ../../../../run_template/pickup_seaice.0000000216.cube38 |
109 |
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pickup_seaice.\ |
110 |
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0000000216 |
111 |
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\cp ../build/mitgcmuv . |
112 |
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qsub job_altix |
113 |
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114 |
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115 |
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########################################################################## |
116 |
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########################################################################## |
117 |
dimitri |
1.37 |
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment |
118 |
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119 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
120 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
121 |
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\cp ../code_alt/code.176t_8x4/* . |
122 |
dimitri |
1.25 |
cd ../build |
123 |
dimitri |
1.37 |
\rm * |
124 |
dimitri |
1.10 |
../../../tools/genmake2 -mods=../code |
125 |
dimitri |
1.1 |
make depend |
126 |
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make |
127 |
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cd .. |
128 |
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mkdir run |
129 |
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cd run |
130 |
dimitri |
1.37 |
\rm * |
131 |
dimitri |
1.65 |
\cp ../../tutorial_held_suarez_cs/input/grid* . |
132 |
dimitri |
1.8 |
\cp ../input/* . |
133 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
134 |
dimitri |
1.3 |
../build/mitgcmuv >& output.txt |
135 |
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136 |
dimitri |
1.8 |
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137 |
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########################################################################## |
138 |
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########################################################################## |
139 |
dimitri |
1.56 |
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort |
140 |
dimitri |
1.8 |
|
141 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
142 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
143 |
dimitri |
1.33 |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
144 |
dimitri |
1.8 |
\cp SIZE.h_mpi SIZE.h |
145 |
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|
146 |
dimitri |
1.25 |
cd ../build |
147 |
dimitri |
1.14 |
\rm * |
148 |
dimitri |
1.54 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
149 |
dimitri |
1.8 |
make depend |
150 |
dimitri |
1.41 |
make -j |
151 |
dimitri |
1.8 |
|
152 |
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cd .. |
153 |
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mkdir run |
154 |
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cd run |
155 |
dimitri |
1.14 |
\rm * |
156 |
dimitri |
1.65 |
\cp ../../tutorial_held_suarez_cs/input/grid* . |
157 |
dimitri |
1.8 |
\cp ../input/* . |
158 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
159 |
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mpirun -np 2 ../build/mitgcmuv |
160 |
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161 |
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162 |
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########################################################################## |
163 |
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########################################################################## |
164 |
dimitri |
1.35 |
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc |
165 |
dimitri |
1.36 |
# starting with pickup file from end of 1992 |
166 |
dimitri |
1.35 |
# requires input files in sudirectories run_template and ncep_rgau |
167 |
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168 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
169 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
170 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* . |
171 |
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\cp packages.conf_hr packages.conf |
172 |
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173 |
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cd ../build |
174 |
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\rm * |
175 |
dimitri |
1.40 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
176 |
dimitri |
1.35 |
make depend |
177 |
dimitri |
1.41 |
make -j |
178 |
dimitri |
1.35 |
|
179 |
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cd .. |
180 |
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mkdir run |
181 |
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cd run |
182 |
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\rm * |
183 |
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\cp ../input/* . |
184 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
185 |
dimitri |
1.41 |
qsub job_altix92_54t |
186 |
dimitri |
1.35 |
|
187 |
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188 |
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########################################################################## |
189 |
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########################################################################## |
190 |
dimitri |
1.58 |
# 510*510*6*50, 1500-tile, 150-cpu, excludes land |
191 |
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# uses s1500t_17x51 configuration |
192 |
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193 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
194 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
195 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
196 |
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\cp SIZE.h_150 SIZE.h |
197 |
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\cp packages.conf_hr packages.conf |
198 |
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199 |
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cd ../build |
200 |
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\rm * |
201 |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
202 |
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make depend |
203 |
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make -j |
204 |
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205 |
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cd .. |
206 |
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mkdir run |
207 |
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cd run |
208 |
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\rm * |
209 |
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\cp ../input/* . |
210 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
211 |
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ln -sf ../../../../run_template/* . |
212 |
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\rm pickup* |
213 |
dimitri |
1.61 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
214 |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
215 |
dimitri |
1.58 |
\cp ../build/mitgcmuv mitgcmuv150 |
216 |
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qsub job_altix150 |
217 |
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218 |
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219 |
dimitri |
1.61 |
########################################################################## |
220 |
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########################################################################## |
221 |
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# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
222 |
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# uses s1500t_17x51 configuration |
223 |
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# example for running on c17-c20 using arrayd |
224 |
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225 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
226 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
227 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
228 |
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\cp SIZE.h_375 SIZE.h |
229 |
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\cp packages.conf_hr packages.conf |
230 |
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231 |
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cd ../build |
232 |
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\rm * |
233 |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
234 |
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make depend |
235 |
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make -j |
236 |
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237 |
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cd .. |
238 |
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mkdir run |
239 |
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cd run |
240 |
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\rm * |
241 |
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\cp ../input/* . |
242 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
243 |
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ln -sf ../../../../run_template/* . |
244 |
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\rm pickup* |
245 |
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ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
246 |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
247 |
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\cp ../build/mitgcmuv . |
248 |
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job_c20_375cpu < /dev/null >&! output.run & |
249 |
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|
250 |
dimitri |
1.58 |
|
251 |
dimitri |
1.56 |
########################################################################## |
252 |
|
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########################################################################## |
253 |
|
|
# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
254 |
|
|
# uses s1500t_17x51 configuration |
255 |
|
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# example for running on c17-c20 using arrayd |
256 |
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|
257 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
258 |
|
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
259 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
260 |
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\cp SIZE.h_375 SIZE.h |
261 |
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\cp packages.conf_hr packages.conf |
262 |
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|
263 |
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cd ../build |
264 |
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\rm * |
265 |
|
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
266 |
|
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make depend |
267 |
|
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make -j |
268 |
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|
269 |
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cd .. |
270 |
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mkdir run |
271 |
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cd run |
272 |
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\rm * |
273 |
|
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\cp ../input/* . |
274 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
275 |
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ln -sf ../../../../run_template/* . |
276 |
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\rm pickup* |
277 |
dimitri |
1.61 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
278 |
|
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
279 |
dimitri |
1.56 |
\cp ../build/mitgcmuv . |
280 |
dimitri |
1.57 |
job_c20_375cpu < /dev/null >&! output.run & |
281 |
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|
282 |
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|
283 |
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########################################################################## |
284 |
|
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########################################################################## |
285 |
|
|
# 510*510*6*50, 1500-tile, 500-cpu, excludes land |
286 |
|
|
# uses s1500t_17x51 configuration |
287 |
|
|
# example for running on c17-c20 using arrayd |
288 |
|
|
|
289 |
|
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cd MITgcm/verification/global_ocean.cs32x15/code |
290 |
|
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
291 |
|
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
292 |
|
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\cp SIZE.h_500 SIZE.h |
293 |
|
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\cp packages.conf_hr packages.conf |
294 |
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|
295 |
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cd ../build |
296 |
|
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\rm * |
297 |
|
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
298 |
|
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make depend |
299 |
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make -j |
300 |
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|
301 |
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cd .. |
302 |
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mkdir run |
303 |
|
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cd run |
304 |
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\rm * |
305 |
|
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\cp ../input/* . |
306 |
|
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
307 |
|
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ln -sf ../../../../run_template/* . |
308 |
|
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\rm pickup* |
309 |
dimitri |
1.61 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
310 |
|
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
311 |
dimitri |
1.57 |
\cp ../build/mitgcmuv . |
312 |
|
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job_c19_500cpu < /dev/null >&! output.run & |
313 |
dimitri |
1.56 |
|
314 |
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|
315 |
dimitri |
1.60 |
########################################################################## |
316 |
|
|
########################################################################## |
317 |
|
|
# 510*510*6*50, 216-cpu cube sphere on cosmos |
318 |
|
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|
319 |
|
|
cd MITgcm/verification/global_ocean.cs32x15/code |
320 |
|
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
321 |
|
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
322 |
|
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\cp SIZE.h_216 SIZE.h |
323 |
|
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\cp packages.conf_hr packages.conf |
324 |
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|
325 |
|
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module unload latest_intel80 |
326 |
|
|
module unload mpich-gm-intel80 |
327 |
|
|
module load latest_intel81 |
328 |
|
|
module load mpich-gm-intel81 |
329 |
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|
330 |
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cd ../build |
331 |
|
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\rm * |
332 |
|
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos |
333 |
|
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make depend |
334 |
|
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make -j |
335 |
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|
336 |
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cd .. |
337 |
|
|
mkdir run |
338 |
|
|
cd run |
339 |
|
|
\rm * |
340 |
|
|
\cp ../input/* . |
341 |
|
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
342 |
|
|
ln -sf ../../../../run_template/* . |
343 |
|
|
\rm pickup* |
344 |
dimitri |
1.61 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
345 |
|
|
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
346 |
dimitri |
1.60 |
\cp ../build/mitgcmuv . |
347 |
|
|
bsub < job_cosmos |
348 |
|
|
|
349 |
dimitri |
1.41 |
|
350 |
dimitri |
1.42 |
########################################################################## |
351 |
|
|
########################################################################## |
352 |
|
|
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc |
353 |
|
|
# requires input files in sudirectories run_template and ncep_rgau |
354 |
|
|
# presently residing under orion:/tmp1/dmenem/cube |
355 |
dimitri |
1.41 |
|
356 |
dimitri |
1.42 |
cd MITgcm/verification/global_ocean.cs32x15/code |
357 |
|
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
358 |
|
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
359 |
|
|
\cp SIZE.h_54 SIZE.h |
360 |
|
|
\cp packages.conf_hr packages.conf |
361 |
dimitri |
1.41 |
|
362 |
dimitri |
1.42 |
cd ../build |
363 |
|
|
\rm * |
364 |
|
|
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
365 |
|
|
make depend |
366 |
|
|
make -j |
367 |
dimitri |
1.41 |
|
368 |
dimitri |
1.42 |
cd .. |
369 |
|
|
mkdir run |
370 |
|
|
cd run |
371 |
|
|
\rm * |
372 |
|
|
\cp ../input/* . |
373 |
|
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
374 |
|
|
qsub job_orion |
375 |
dimitri |
1.35 |
|
376 |
|
|
|
377 |
|
|
########################################################################## |
378 |
|
|
########################################################################## |
379 |
dimitri |
1.41 |
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc |
380 |
dimitri |
1.35 |
# requires input files in sudirectories run_template and ncep_rgau |
381 |
|
|
# presently residing under orion:/tmp1/dmenem/cube |
382 |
|
|
|
383 |
|
|
cd MITgcm/verification/global_ocean.cs32x15/code |
384 |
|
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
385 |
dimitri |
1.41 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* . |
386 |
|
|
\cp SIZE.h_41 SIZE.h |
387 |
dimitri |
1.35 |
\cp packages.conf_hr packages.conf |
388 |
|
|
|
389 |
|
|
cd ../build |
390 |
|
|
\rm * |
391 |
dimitri |
1.41 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
392 |
dimitri |
1.35 |
make depend |
393 |
dimitri |
1.41 |
make -j |
394 |
dimitri |
1.35 |
|
395 |
|
|
cd .. |
396 |
|
|
mkdir run |
397 |
|
|
cd run |
398 |
|
|
\rm * |
399 |
|
|
\cp ../input/* . |
400 |
|
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
401 |
dimitri |
1.41 |
qsub job_orion41 |
402 |
dimitri |
1.9 |
|
403 |
|
|
|
404 |
|
|
########################################################################## |
405 |
|
|
########################################################################## |
406 |
dimitri |
1.41 |
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc |
407 |
dimitri |
1.17 |
# requires input files in sudirectories run_template and ncep_rgau |
408 |
dimitri |
1.41 |
# presently residing under orion:/tmp1/dmenem/cube |
409 |
dimitri |
1.9 |
|
410 |
|
|
cd MITgcm/verification/global_ocean.cs32x15/code |
411 |
|
|
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
412 |
dimitri |
1.41 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
413 |
|
|
\cp SIZE.h_50 SIZE.h |
414 |
dimitri |
1.12 |
\cp packages.conf_hr packages.conf |
415 |
dimitri |
1.9 |
|
416 |
dimitri |
1.25 |
cd ../build |
417 |
dimitri |
1.15 |
\rm * |
418 |
dimitri |
1.13 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
419 |
dimitri |
1.9 |
make depend |
420 |
dimitri |
1.41 |
make -j |
421 |
dimitri |
1.9 |
|
422 |
|
|
cd .. |
423 |
|
|
mkdir run |
424 |
|
|
cd run |
425 |
dimitri |
1.15 |
\rm * |
426 |
|
|
\cp ../input/* . |
427 |
|
|
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
428 |
dimitri |
1.41 |
qsub job_orion |