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Revision 1.65 - (hide annotations) (download)
Tue Sep 5 02:49:56 2006 UTC (17 years, 8 months ago) by dimitri
Branch: MAIN
Changes since 1.64: +11 -1 lines 
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input
1 dimitri 1.59 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.65
3     Last updated: September 4, 2006
4     Modified 32*32*6*15 experiments to use grid_cs32.* files from
5     verification/tutorial_held_suarez_cs/input instead of
6     tile* files from verification/global_ocean.cs32x15/input
7    
8     Updated: August 8, 2006
9 dimitri 1.64 216-CPU code and input used for integrating cube37
10     using "June 10, 2006" MITgcm code.
11 dimitri 1.8
12    
13     ##########################################################################
14     ##########################################################################
15 dimitri 1.14 # getting the code from anonymous CVS server
16 dimitri 1.1
17 dimitri 1.38 cvs co MITgcm_contrib/high_res_cube/README_ice
18     cvs co MITgcm_contrib/high_res_cube/code-mods
19     cvs co MITgcm_contrib/high_res_cube/input
20     cvs co MITgcm_contrib/high_res_cube/results
21 dimitri 1.43 cvs co MITgcm_code
22     cvs co MITgcm/verification/global_ocean.cs32x15
23 dimitri 1.65 cvs co MITgcm/verification/tutorial_held_suarez_cs/input
24 dimitri 1.14
25    
26     ##########################################################################
27     ##########################################################################
28     # 32*32*6*15, 1-cpu cube sphere
29 dimitri 1.3
30 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
31 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
32 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
33 dimitri 1.37 cd ../build
34     \rm *
35     ../../../tools/genmake2 -mods=../code
36     make depend
37     make
38     cd ..
39     mkdir run
40     cd run
41     \rm *
42 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
43 dimitri 1.37 \cp ../input/* .
44     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
45     ../build/mitgcmuv >& output.txt
46 dimitri 1.3
47 dimitri 1.37 comparison output is in:
48     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
49    
50     to use matlab to look at the output
51     matlab
52    
53 dimitri 1.55 for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
54     'QNETtave','FVtave','FUtave','EmPmRtave'}
55 dimitri 1.37 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
56     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
57     end
58    
59 dimitri 1.55 heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
60 dimitri 1.37 mask=0*heff; mask(find(heff>.001))=1;
61 dimitri 1.55 uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
62     vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
63 dimitri 1.37 clf
64 dimitri 1.55 subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
65     subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
66     subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
67     subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
68 dimitri 1.37
69    
70     ##########################################################################
71     ##########################################################################
72     # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
73    
74     cd MITgcm/verification/global_ocean.cs32x15/code
75     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
76     \cp ../code_alt/code.176t_8x4/* .
77 dimitri 1.25 cd ../build
78 dimitri 1.37 \rm *
79 dimitri 1.10 ../../../tools/genmake2 -mods=../code
80 dimitri 1.1 make depend
81     make
82     cd ..
83     mkdir run
84     cd run
85 dimitri 1.37 \rm *
86 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
87 dimitri 1.8 \cp ../input/* .
88     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
89 dimitri 1.3 ../build/mitgcmuv >& output.txt
90    
91 dimitri 1.8
92     ##########################################################################
93     ##########################################################################
94 dimitri 1.56 # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
95 dimitri 1.8
96     cd MITgcm/verification/global_ocean.cs32x15/code
97     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
98 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
99 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
100    
101 dimitri 1.25 cd ../build
102 dimitri 1.14 \rm *
103 dimitri 1.54 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
104 dimitri 1.8 make depend
105 dimitri 1.41 make -j
106 dimitri 1.8
107     cd ..
108     mkdir run
109     cd run
110 dimitri 1.14 \rm *
111 dimitri 1.65 \cp ../../tutorial_held_suarez_cs/input/grid* .
112 dimitri 1.8 \cp ../input/* .
113     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
114     mpirun -np 2 ../build/mitgcmuv
115    
116    
117     ##########################################################################
118     ##########################################################################
119 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
120 dimitri 1.36 # starting with pickup file from end of 1992
121 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
122    
123     cd MITgcm/verification/global_ocean.cs32x15/code
124     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
125     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
126     \cp packages.conf_hr packages.conf
127    
128     cd ../build
129     \rm *
130 dimitri 1.40 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
131 dimitri 1.35 make depend
132 dimitri 1.41 make -j
133 dimitri 1.35
134     cd ..
135     mkdir run
136     cd run
137     \rm *
138     \cp ../input/* .
139     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
140 dimitri 1.41 qsub job_altix92_54t
141 dimitri 1.35
142    
143     ##########################################################################
144     ##########################################################################
145 dimitri 1.52 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
146 dimitri 1.23 # requires input files in sudirectories run_template and ncep_rgau
147 dimitri 1.41 # these can be obained from lou:/u/menemenl/cube
148 dimitri 1.23
149     cd MITgcm/verification/global_ocean.cs32x15/code
150     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
151 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
152     \cp SIZE.h_216 SIZE.h
153 dimitri 1.23 \cp packages.conf_hr packages.conf
154 dimitri 1.8
155 dimitri 1.25 cd ../build
156 dimitri 1.14 \rm *
157 dimitri 1.46 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
158 dimitri 1.8 make depend
159 dimitri 1.52 make -j
160 dimitri 1.8
161     cd ..
162     mkdir run
163     cd run
164 dimitri 1.14 \rm *
165 dimitri 1.8 \cp ../input/* .
166     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
167 dimitri 1.44 ln -sf ../../../../run_template/* .
168 dimitri 1.63 \rm pickup* data.pkg data.seaice data.exf_clim data.exf data
169     \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
170 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216
171     ln -sf ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216
172 dimitri 1.44 \cp ../build/mitgcmuv .
173 dimitri 1.57 qsub job_altix
174 dimitri 1.41
175 dimitri 1.61
176 dimitri 1.58 ##########################################################################
177     ##########################################################################
178     # 510*510*6*50, 1500-tile, 150-cpu, excludes land
179     # uses s1500t_17x51 configuration
180    
181     cd MITgcm/verification/global_ocean.cs32x15/code
182     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
183     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
184     \cp SIZE.h_150 SIZE.h
185     \cp packages.conf_hr packages.conf
186    
187     cd ../build
188     \rm *
189     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
190     make depend
191     make -j
192    
193     cd ..
194     mkdir run
195     cd run
196     \rm *
197     \cp ../input/* .
198     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
199     ln -sf ../../../../run_template/* .
200     \rm pickup*
201 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
202     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
203 dimitri 1.58 \cp ../build/mitgcmuv mitgcmuv150
204     qsub job_altix150
205    
206    
207    
208    
209 dimitri 1.61 ##########################################################################
210     ##########################################################################
211     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
212     # uses s1500t_17x51 configuration
213     # example for running on c17-c20 using arrayd
214    
215     cd MITgcm/verification/global_ocean.cs32x15/code
216     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
217     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
218     \cp SIZE.h_375 SIZE.h
219     \cp packages.conf_hr packages.conf
220    
221     cd ../build
222     \rm *
223     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
224     make depend
225     make -j
226    
227     cd ..
228     mkdir run
229     cd run
230     \rm *
231     \cp ../input/* .
232     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
233     ln -sf ../../../../run_template/* .
234     \rm pickup*
235     ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
236     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
237     \cp ../build/mitgcmuv .
238     job_c20_375cpu < /dev/null >&! output.run &
239    
240 dimitri 1.58
241    
242    
243    
244    
245    
246    
247    
248    
249    
250 dimitri 1.41
251 dimitri 1.56 ##########################################################################
252     ##########################################################################
253     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
254     # uses s1500t_17x51 configuration
255     # example for running on c17-c20 using arrayd
256    
257     cd MITgcm/verification/global_ocean.cs32x15/code
258     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
259     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
260     \cp SIZE.h_375 SIZE.h
261     \cp packages.conf_hr packages.conf
262    
263     cd ../build
264     \rm *
265     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
266     make depend
267     make -j
268    
269     cd ..
270     mkdir run
271     cd run
272     \rm *
273     \cp ../input/* .
274     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
275     ln -sf ../../../../run_template/* .
276     \rm pickup*
277 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
278     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
279 dimitri 1.56 \cp ../build/mitgcmuv .
280 dimitri 1.57 job_c20_375cpu < /dev/null >&! output.run &
281    
282    
283     ##########################################################################
284     ##########################################################################
285     # 510*510*6*50, 1500-tile, 500-cpu, excludes land
286     # uses s1500t_17x51 configuration
287     # example for running on c17-c20 using arrayd
288    
289     cd MITgcm/verification/global_ocean.cs32x15/code
290     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
291     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
292     \cp SIZE.h_500 SIZE.h
293     \cp packages.conf_hr packages.conf
294    
295     cd ../build
296     \rm *
297     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
298     make depend
299     make -j
300    
301     cd ..
302     mkdir run
303     cd run
304     \rm *
305     \cp ../input/* .
306     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
307     ln -sf ../../../../run_template/* .
308     \rm pickup*
309 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
310     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
311 dimitri 1.57 \cp ../build/mitgcmuv .
312     job_c19_500cpu < /dev/null >&! output.run &
313 dimitri 1.56
314    
315    
316 dimitri 1.41
317    
318 dimitri 1.60 ##########################################################################
319     ##########################################################################
320     # 510*510*6*50, 216-cpu cube sphere on cosmos
321    
322     cd MITgcm/verification/global_ocean.cs32x15/code
323     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
324     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
325     \cp SIZE.h_216 SIZE.h
326     \cp packages.conf_hr packages.conf
327    
328     module unload latest_intel80
329     module unload mpich-gm-intel80
330     module load latest_intel81
331     module load mpich-gm-intel81
332    
333     cd ../build
334     \rm *
335     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
336     make depend
337     make -j
338    
339     cd ..
340     mkdir run
341     cd run
342     \rm *
343     \cp ../input/* .
344     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
345     ln -sf ../../../../run_template/* .
346     \rm pickup*
347 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
348     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
349 dimitri 1.60 \cp ../build/mitgcmuv .
350     bsub < job_cosmos
351    
352 dimitri 1.41
353    
354 dimitri 1.51
355    
356    
357    
358    
359 dimitri 1.41
360    
361    
362    
363    
364    
365    
366    
367    
368    
369    
370    
371 dimitri 1.42 ##########################################################################
372     ##########################################################################
373     # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
374     # requires input files in sudirectories run_template and ncep_rgau
375     # presently residing under orion:/tmp1/dmenem/cube
376 dimitri 1.41
377 dimitri 1.42 cd MITgcm/verification/global_ocean.cs32x15/code
378     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
379     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
380     \cp SIZE.h_54 SIZE.h
381     \cp packages.conf_hr packages.conf
382 dimitri 1.41
383 dimitri 1.42 cd ../build
384     \rm *
385     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
386     make depend
387     make -j
388 dimitri 1.41
389 dimitri 1.42 cd ..
390     mkdir run
391     cd run
392     \rm *
393     \cp ../input/* .
394     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
395     qsub job_orion
396 dimitri 1.35
397    
398     ##########################################################################
399     ##########################################################################
400 dimitri 1.41 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
401 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
402     # presently residing under orion:/tmp1/dmenem/cube
403    
404     cd MITgcm/verification/global_ocean.cs32x15/code
405     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
406 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
407     \cp SIZE.h_41 SIZE.h
408 dimitri 1.35 \cp packages.conf_hr packages.conf
409    
410     cd ../build
411     \rm *
412 dimitri 1.41 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
413 dimitri 1.35 make depend
414 dimitri 1.41 make -j
415 dimitri 1.35
416     cd ..
417     mkdir run
418     cd run
419     \rm *
420     \cp ../input/* .
421     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
422 dimitri 1.41 qsub job_orion41
423 dimitri 1.9
424    
425     ##########################################################################
426     ##########################################################################
427 dimitri 1.41 # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
428 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
429 dimitri 1.41 # presently residing under orion:/tmp1/dmenem/cube
430 dimitri 1.9
431     cd MITgcm/verification/global_ocean.cs32x15/code
432     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
433 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
434     \cp SIZE.h_50 SIZE.h
435 dimitri 1.12 \cp packages.conf_hr packages.conf
436 dimitri 1.9
437 dimitri 1.25 cd ../build
438 dimitri 1.15 \rm *
439 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
440 dimitri 1.9 make depend
441 dimitri 1.41 make -j
442 dimitri 1.9
443     cd ..
444     mkdir run
445     cd run
446 dimitri 1.15 \rm *
447     \cp ../input/* .
448     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
449 dimitri 1.41 qsub job_orion
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