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Revision 1.63 - (hide annotations) (download)
Sat Jun 10 15:47:23 2006 UTC (19 years, 1 month ago) by dimitri
Branch: MAIN
Changes since 1.62: +4 -12 lines 
updating high_res_cube instructions for cube37
1 dimitri 1.59 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.63 Date last updated: June 10, 2006
3     216-CPU code and input used for integrating cube37.
4 dimitri 1.8
5    
6     ##########################################################################
7     ##########################################################################
8 dimitri 1.14 # getting the code from anonymous CVS server
9 dimitri 1.1
10 dimitri 1.38 cvs co MITgcm_contrib/high_res_cube/README_ice
11     cvs co MITgcm_contrib/high_res_cube/code-mods
12     cvs co MITgcm_contrib/high_res_cube/input
13     cvs co MITgcm_contrib/high_res_cube/results
14 dimitri 1.43 cvs co MITgcm_code
15     cvs co MITgcm/verification/global_ocean.cs32x15
16 dimitri 1.14
17    
18     ##########################################################################
19     ##########################################################################
20     # 32*32*6*15, 1-cpu cube sphere
21 dimitri 1.3
22 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
23 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
24 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
25 dimitri 1.37 cd ../build
26     \rm *
27     ../../../tools/genmake2 -mods=../code
28     make depend
29     make
30     cd ..
31     mkdir run
32     cd run
33     \rm *
34     \cp ../input/* .
35     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
36     ../build/mitgcmuv >& output.txt
37 dimitri 1.3
38 dimitri 1.37 comparison output is in:
39     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
40    
41     to use matlab to look at the output
42     matlab
43    
44 dimitri 1.55 for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
45     'QNETtave','FVtave','FUtave','EmPmRtave'}
46 dimitri 1.37 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48     end
49    
50 dimitri 1.55 heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
51 dimitri 1.37 mask=0*heff; mask(find(heff>.001))=1;
52 dimitri 1.55 uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
53     vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
54 dimitri 1.37 clf
55 dimitri 1.55 subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
56     subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
57     subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
58     subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
59 dimitri 1.37
60    
61     ##########################################################################
62     ##########################################################################
63     # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
64    
65     cd MITgcm/verification/global_ocean.cs32x15/code
66     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
67     \cp ../code_alt/code.176t_8x4/* .
68 dimitri 1.25 cd ../build
69 dimitri 1.37 \rm *
70 dimitri 1.10 ../../../tools/genmake2 -mods=../code
71 dimitri 1.1 make depend
72     make
73     cd ..
74     mkdir run
75     cd run
76 dimitri 1.37 \rm *
77 dimitri 1.8 \cp ../input/* .
78     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79 dimitri 1.3 ../build/mitgcmuv >& output.txt
80    
81 dimitri 1.8
82     ##########################################################################
83     ##########################################################################
84 dimitri 1.56 # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
85 dimitri 1.8
86     cd MITgcm/verification/global_ocean.cs32x15/code
87     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
88 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
89 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
90    
91 dimitri 1.25 cd ../build
92 dimitri 1.14 \rm *
93 dimitri 1.54 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
94 dimitri 1.8 make depend
95 dimitri 1.41 make -j
96 dimitri 1.8
97     cd ..
98     mkdir run
99     cd run
100 dimitri 1.14 \rm *
101 dimitri 1.8 \cp ../input/* .
102     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
103     mpirun -np 2 ../build/mitgcmuv
104    
105    
106     ##########################################################################
107     ##########################################################################
108 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
109 dimitri 1.36 # starting with pickup file from end of 1992
110 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
111    
112     cd MITgcm/verification/global_ocean.cs32x15/code
113     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
114     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
115     \cp packages.conf_hr packages.conf
116    
117     cd ../build
118     \rm *
119 dimitri 1.40 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
120 dimitri 1.35 make depend
121 dimitri 1.41 make -j
122 dimitri 1.35
123     cd ..
124     mkdir run
125     cd run
126     \rm *
127     \cp ../input/* .
128     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
129 dimitri 1.41 qsub job_altix92_54t
130 dimitri 1.35
131    
132     ##########################################################################
133     ##########################################################################
134 dimitri 1.52 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
135 dimitri 1.23 # requires input files in sudirectories run_template and ncep_rgau
136 dimitri 1.41 # these can be obained from lou:/u/menemenl/cube
137 dimitri 1.23
138     cd MITgcm/verification/global_ocean.cs32x15/code
139     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
140 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
141     \cp SIZE.h_216 SIZE.h
142 dimitri 1.23 \cp packages.conf_hr packages.conf
143 dimitri 1.8
144 dimitri 1.25 cd ../build
145 dimitri 1.14 \rm *
146 dimitri 1.46 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
147 dimitri 1.8 make depend
148 dimitri 1.52 make -j
149 dimitri 1.8
150     cd ..
151     mkdir run
152     cd run
153 dimitri 1.14 \rm *
154 dimitri 1.8 \cp ../input/* .
155     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
156 dimitri 1.44 ln -sf ../../../../run_template/* .
157 dimitri 1.63 \rm pickup* data.pkg data.seaice data.exf_clim data.exf data
158     \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
159 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216
160     ln -sf ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216
161 dimitri 1.44 \cp ../build/mitgcmuv .
162 dimitri 1.57 qsub job_altix
163 dimitri 1.41
164 dimitri 1.61
165 dimitri 1.58 ##########################################################################
166     ##########################################################################
167     # 510*510*6*50, 1500-tile, 150-cpu, excludes land
168     # uses s1500t_17x51 configuration
169    
170     cd MITgcm/verification/global_ocean.cs32x15/code
171     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
172     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
173     \cp SIZE.h_150 SIZE.h
174     \cp packages.conf_hr packages.conf
175    
176     cd ../build
177     \rm *
178     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
179     make depend
180     make -j
181    
182     cd ..
183     mkdir run
184     cd run
185     \rm *
186     \cp ../input/* .
187     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
188     ln -sf ../../../../run_template/* .
189     \rm pickup*
190 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
191     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
192 dimitri 1.58 \cp ../build/mitgcmuv mitgcmuv150
193     qsub job_altix150
194    
195    
196    
197    
198 dimitri 1.61 ##########################################################################
199     ##########################################################################
200     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
201     # uses s1500t_17x51 configuration
202     # example for running on c17-c20 using arrayd
203    
204     cd MITgcm/verification/global_ocean.cs32x15/code
205     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
206     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
207     \cp SIZE.h_375 SIZE.h
208     \cp packages.conf_hr packages.conf
209    
210     cd ../build
211     \rm *
212     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
213     make depend
214     make -j
215    
216     cd ..
217     mkdir run
218     cd run
219     \rm *
220     \cp ../input/* .
221     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
222     ln -sf ../../../../run_template/* .
223     \rm pickup*
224     ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
225     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
226     \cp ../build/mitgcmuv .
227     job_c20_375cpu < /dev/null >&! output.run &
228    
229 dimitri 1.58
230    
231    
232    
233    
234    
235    
236    
237    
238    
239 dimitri 1.41
240 dimitri 1.56 ##########################################################################
241     ##########################################################################
242     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
243     # uses s1500t_17x51 configuration
244     # example for running on c17-c20 using arrayd
245    
246     cd MITgcm/verification/global_ocean.cs32x15/code
247     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
248     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
249     \cp SIZE.h_375 SIZE.h
250     \cp packages.conf_hr packages.conf
251    
252     cd ../build
253     \rm *
254     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
255     make depend
256     make -j
257    
258     cd ..
259     mkdir run
260     cd run
261     \rm *
262     \cp ../input/* .
263     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
264     ln -sf ../../../../run_template/* .
265     \rm pickup*
266 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
267     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
268 dimitri 1.56 \cp ../build/mitgcmuv .
269 dimitri 1.57 job_c20_375cpu < /dev/null >&! output.run &
270    
271    
272     ##########################################################################
273     ##########################################################################
274     # 510*510*6*50, 1500-tile, 500-cpu, excludes land
275     # uses s1500t_17x51 configuration
276     # example for running on c17-c20 using arrayd
277    
278     cd MITgcm/verification/global_ocean.cs32x15/code
279     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
280     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
281     \cp SIZE.h_500 SIZE.h
282     \cp packages.conf_hr packages.conf
283    
284     cd ../build
285     \rm *
286     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
287     make depend
288     make -j
289    
290     cd ..
291     mkdir run
292     cd run
293     \rm *
294     \cp ../input/* .
295     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
296     ln -sf ../../../../run_template/* .
297     \rm pickup*
298 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
299     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
300 dimitri 1.57 \cp ../build/mitgcmuv .
301     job_c19_500cpu < /dev/null >&! output.run &
302 dimitri 1.56
303    
304    
305 dimitri 1.41
306    
307 dimitri 1.60 ##########################################################################
308     ##########################################################################
309     # 510*510*6*50, 216-cpu cube sphere on cosmos
310    
311     cd MITgcm/verification/global_ocean.cs32x15/code
312     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
313     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
314     \cp SIZE.h_216 SIZE.h
315     \cp packages.conf_hr packages.conf
316    
317     module unload latest_intel80
318     module unload mpich-gm-intel80
319     module load latest_intel81
320     module load mpich-gm-intel81
321    
322     cd ../build
323     \rm *
324     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
325     make depend
326     make -j
327    
328     cd ..
329     mkdir run
330     cd run
331     \rm *
332     \cp ../input/* .
333     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
334     ln -sf ../../../../run_template/* .
335     \rm pickup*
336 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
337     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
338 dimitri 1.60 \cp ../build/mitgcmuv .
339     bsub < job_cosmos
340    
341 dimitri 1.41
342    
343 dimitri 1.51
344    
345    
346    
347    
348 dimitri 1.41
349    
350    
351    
352    
353    
354    
355    
356    
357    
358    
359    
360 dimitri 1.42 ##########################################################################
361     ##########################################################################
362     # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
363     # requires input files in sudirectories run_template and ncep_rgau
364     # presently residing under orion:/tmp1/dmenem/cube
365 dimitri 1.41
366 dimitri 1.42 cd MITgcm/verification/global_ocean.cs32x15/code
367     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
368     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
369     \cp SIZE.h_54 SIZE.h
370     \cp packages.conf_hr packages.conf
371 dimitri 1.41
372 dimitri 1.42 cd ../build
373     \rm *
374     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
375     make depend
376     make -j
377 dimitri 1.41
378 dimitri 1.42 cd ..
379     mkdir run
380     cd run
381     \rm *
382     \cp ../input/* .
383     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
384     qsub job_orion
385 dimitri 1.35
386    
387     ##########################################################################
388     ##########################################################################
389 dimitri 1.41 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
390 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
391     # presently residing under orion:/tmp1/dmenem/cube
392    
393     cd MITgcm/verification/global_ocean.cs32x15/code
394     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
395 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
396     \cp SIZE.h_41 SIZE.h
397 dimitri 1.35 \cp packages.conf_hr packages.conf
398    
399     cd ../build
400     \rm *
401 dimitri 1.41 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
402 dimitri 1.35 make depend
403 dimitri 1.41 make -j
404 dimitri 1.35
405     cd ..
406     mkdir run
407     cd run
408     \rm *
409     \cp ../input/* .
410     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
411 dimitri 1.41 qsub job_orion41
412 dimitri 1.9
413    
414     ##########################################################################
415     ##########################################################################
416 dimitri 1.41 # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
417 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
418 dimitri 1.41 # presently residing under orion:/tmp1/dmenem/cube
419 dimitri 1.9
420     cd MITgcm/verification/global_ocean.cs32x15/code
421     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
422 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
423     \cp SIZE.h_50 SIZE.h
424 dimitri 1.12 \cp packages.conf_hr packages.conf
425 dimitri 1.9
426 dimitri 1.25 cd ../build
427 dimitri 1.15 \rm *
428 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
429 dimitri 1.9 make depend
430 dimitri 1.41 make -j
431 dimitri 1.9
432     cd ..
433     mkdir run
434     cd run
435 dimitri 1.15 \rm *
436     \cp ../input/* .
437     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
438 dimitri 1.41 qsub job_orion
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